slurmConfig.json

{
	"__default__" :
	{
		"account" : "rc_dmckay1_pi",
		"time" : "30:00",
		"threads" : "1",
		"mem" : "8G"
	},

	"trim_adapter" :
	{
		"time"	: "1:00:00",
		"threads" : "8",
		"mem" : "8G"
	},

	"bowtie2index" :
	{
		"time"	: "1:00:00",
		"threads" : "1",
		"mem" : "8G"
	},

	"align" :
	{
		"time"	: "1:30:00",
		"threads" : "8",
		"mem" : "8G"
	},

	"fastqScreen" :
	{
		"time"	: "1:00:00",
		"threads" : "1",
		"mem" : "8G"
	},

	"markDups" :
	{
		"mem" : "8G",
		"time" : "1:00:00"
	},

	"removeDups" :
	{
		"mem" : "8G"
	},

	"splitFragments" :
	{
		"mem" : "16G",
		"threads" : "1"
	},
	
	"makeFragmentBedGraphs" :
	{
		"mem" : "16G",
		"threads" : "1"
	},

	"makeSpikeNormFragmentBedGraphs" :
	{
		"mem" : "16G",
		"threads" : "1"
	},

	"qcReport" :
	{
		"mem" : "8G",
		"threads" : "1",
		"time" : "30:00"
	},
	
	"mergeBams" :
	{
		"time" : "45:00",
		"mem" : "16G"
	}

}