From 51278bfab8b1ec07dcfb752428ff9cbba7b89c8d Mon Sep 17 00:00:00 2001 From: Harshula Jayasuriya Date: Thu, 17 Oct 2024 16:59:25 +1100 Subject: [PATCH] Updated spack setup page. (#824) Squashed 10 commits: getting_started/spack.md: incorporate feedback * Thanks to Claire Carouge, Chris Bull and Davide Marchegiani. Changed '/home/565/davide' with '/Users/davide' in 'how to build a model' page Moved CSS styles to 'access-nri.css'. Minor fixes in the styles for 'how to build a model'. Added coloured outputs Fix colours for spack output Added Spencer's suggestions Added specification of step not require in admonition of 'how to build a mode' page Added Spencer's suggestion on liinking the 'how to run a model page' Fixed compiler in install output Fixed /Users/davide. Fixed architecture. --- docs/css/access-nri.css | 37 +++ docs/getting_started/spack.md | 304 ++++++++++++++++++++++- docs/models/run-a-model/build_a_model.md | 251 ++++++++----------- 3 files changed, 441 insertions(+), 151 deletions(-) diff --git a/docs/css/access-nri.css b/docs/css/access-nri.css index 5d4fbca26..e064bd1e2 100644 --- a/docs/css/access-nri.css +++ b/docs/css/access-nri.css @@ -1088,6 +1088,39 @@ img.terminalSwitch:hover { cursor: pointer; } +/* =============================================================== + Virtural terminal colours for Spack output +*/ + +.spack-red { + color: #FF6E67; +} +.spack-highlighted { + color: #FFFFFF; + font-weight: 600; +} +.spack-cyan { + color: cyan; +} +.spack-indigo { + color: #6871FF; +} +.spack-green{ + color: #00C200; +} +.spack-pink { + color: #CA30C7; +} +.spack-grey { + color: #686868; +} + +.spack::part(directory), +.spack ::part(directory) { + color: #60FA67; +} + + /* =============================================================== General styling for html tabs */ @@ -1156,6 +1189,10 @@ img.terminalSwitch:hover { /* =============================================================== Miscellaneous */ +.keep-blanks { + white-space: pre; +} + .centered { display: block; margin-left: auto; diff --git a/docs/getting_started/spack.md b/docs/getting_started/spack.md index d2a9462bf..472260401 100644 --- a/docs/getting_started/spack.md +++ b/docs/getting_started/spack.md @@ -1,7 +1,8 @@ # Set up Spack for building ACCESS models !!! danger - This page is tailored to experienced users and collaborators developing ACCESS models. + This page is tailored to experienced users and collaborators developing ACCESS models.
+ This step is *not* required if you *only* want to run a model. If you are looking for information on how to run a model, refer to the [Run a Model](/models/run-a-model) section. [Spack](https://spack.io/about/) is a build-from-source package manager, specifically designed to simplify the installation of scientific software on supercomputers. @@ -9,7 +10,6 @@ To use _Spack_, please familiarise yourself with the [Basic Usage instructions]( We also recommend that you refer to the [Spack 101 Tutorial](https://spack-tutorial.readthedocs.io/en/latest/). - ## Prerequisites These instructions are tailored specifically for _Gadi_. To use _Spack_ on _Gadi_, you must have an NCI account. For instructions on how to set up an account, refer to [Set Up your NCI Account](/getting_started/set_up_nci_account). @@ -20,11 +20,11 @@ These instructions are tailored specifically for _Gadi_. To use _Spack_ on _Gadi ### Create a directory for Spack -Create a directory on the filesystem where _Spack_ will be installed (e.g. `/g/data/$PROJECT/$USER/spack/0.22`). +Create a directory on the filesystem where _Spack_ will be installed (e.g. `/g/data/$PROJECT/$USER/spack/0.22`). Use the `/g/data` filesystem if you wish to run the binaries on the compute nodes. ``` -mkdir -p spack/0.22 -cd spack/0.22 +mkdir -p /g/data/$PROJECT/$USER/spack/0.22 +cd /g/data/$PROJECT/$USER/spack/0.22 ``` ### Clone the relevant git repositories @@ -47,21 +47,301 @@ ln -s -r -v spack-config/v0.22/gadi/* spack/etc/spack/ !!! success Your _Spack_ setup is complete! -## Test Spack (OPTIONAL) +For instructions on how to build an ACCESS model using _Spack_, refer to [Build an ACCESS model](/models/run-a-model/build_a_model). -To test _Spack_ we will create an `ACCESS-TEST` environment and build the relevant packages. Then, we will uninstall all the packages and remove the environment. +## Enable Spack + +!!! warning + This step needs to be carried out for any new login or new shell environment. ``` +cd /g/data/$PROJECT/$USER/spack/0.22 module purge -cd spack/0.22 . spack-config/spack-enable.bash +``` + +!!! warning + There is a space between the `.` and the path to the file, as we are sourcing the file. + +## Test Spack (OPTIONAL) + +To test that your Spack installation works as expected, we will create an `ACCESS-TEST` environment and build the relevant packages (this will take approximately 30 minutes). Then, we will uninstall all the packages and remove the environment. + + +### Create a Spack managed environment + +``` git clone https://github.com/ACCESS-NRI/ACCESS-TEST.git spack env create test ACCESS-TEST/spack.yaml +``` + + + git clone https://github.com/ACCESS-NRI/ACCESS-TEST.git + Cloning into 'ACCESS-TEST'... + remote: Enumerating objects: 33, done. + remote: Counting objects: 100% (33/33), done. + remote: Compressing objects: 100% (20/20), done. + remote: Total 33 (delta 12), reused 27 (delta 9), pack-reused 0 (from 0) + Receiving objects: 100% (33/33), 15.92 KiB | 1.06 MiB/s, done. + Resolving deltas: 100% (12/12), done. + spack env create test ACCESS-TEST/spack.yaml + \==> Created environment test in: /g/data/$PROJECT/$USER/spack/0.22/environments/test + \==> Activate with: spack env -p activate test + + +### Activate the environment +Activate the `test` _Spack_ environment by running: +``` spack env activate -p test +``` + + spack env activate -p test + + + +### Compile packages + +``` spack find spack concretize -f --fresh -spack install --verbose +spack install +``` + + + spack find + \==> In environment test + \==> 1 root specs + - access-test@git.2024.09.20 + + \==> 0 installed packages + spack concretize -f --fresh + \==> Concretized access-test@git.2024.09.20 + + - hmy75yl access-test@git.2024.09.20%intel@2021.10.0\~deterministic build_system=bundle arch=linux-rocky8-x86_64 + + + [e] 5elnsoi ^glibc@2.28%intel@2021.10.0 build_system=autotools arch=linux-rocky8-x86_64 + + + - kok5n7h ^oasis3-mct@git.2023.11.09=2023.11.09%intel@2021.10.0\~deterministic\~optimisation_report build_system=makefile arch=linux-rocky8-x86_64 + + + - doeoclg ^gmake@4.4.1%intel@2021.10.0\~guile build_system=generic arch=linux-rocky8-x86_64 + + + - ntfunrm ^netcdf-fortran@4.6.1%intel@2021.10.0\~doc+pic+shared build_system=autotools arch=linux-rocky8-x86_64 + + + - vob7om3 ^netcdf-c@4.9.2%intel@2021.10.0+blosc\~byterange\~dap\~fsync\~hdf4\~jna+mpi\~nczarr_zip+optimize\~parallel-netcdf+pic+shared+szip+zstd build_system=autotools patches=0161eb8 arch=linux-rocky8-x86_64 + + + - 357vng5 ^bzip2@1.0.8%intel@2021.10.0\~debug\~pic+shared build_system=generic arch=linux-rocky8-x86_64 + + + - y7n7vkn ^diffutils@3.10%intel@2021.10.0 build_system=autotools arch=linux-rocky8-x86_64 + + + - 55ipnye ^libiconv@1.17%intel@2021.10.0 build_system=autotools libs=shared,static arch=linux-rocky8-x86_64 + + + - zrjfo56 ^c-blosc@1.21.5%intel@2021.10.0+avx2\~ipo build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64 + + + [e] rldyvqn ^cmake@3.24.2%intel@2021.10.0\~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rocky8-x86_64 + + + - 7a5olrr ^lz4@1.9.4%intel@2021.10.0+pic build_system=makefile libs=shared,static arch=linux-rocky8-x86_64 + + + - wk4pvru ^snappy@1.1.10%intel@2021.10.0\~ipo+pic+shared build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64 + + + - aumsrgz ^hdf5@1.14.3%intel@2021.10.0\~cxx\~fortran+hl\~ipo\~java\~map+mpi+shared\~subfiling\~szip\~threadsafe+tools api=default build_system=cmake build_type=Release generator=make patches=82088c8 arch=linux-rocky8-x86_64 + + + - vrupasu ^pkgconf@2.2.0%intel@2021.10.0 build_system=autotools arch=linux-rocky8-x86_64 + + + - x4hw5jq ^libaec@1.0.6%intel@2021.10.0\~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64 + + + - wa2x7rh ^zlib-ng@2.1.6%intel@2021.10.0+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-rocky8-x86_64 + + + - kzc7pcv ^zstd@1.5.6%intel@2021.10.0\~programs build_system=makefile libs=shared,static arch=linux-rocky8-x86_64 + + + [e] uvea7q2 ^openmpi@4.1.5%intel@2021.10.0 cppflags='-diag-disable=10441' \~atomics\~cuda\~cxx\~cxx_exceptions\~gpfs\~internal-hwloc\~internal-libevent\~internal-pmix\~java\~legacylaunchers\~lustre\~memchecker\~openshmem\~orterunprefix\~romio+rsh\~singularity\~static+vt+wrapper-rpath build_system=autotools fabrics=none romio-filesystem=none schedulers=none arch=linux-rocky8-x86_64 + + + spack install + + + \==> Installing glibc-2.28-mqjolvbeskcnhz5chvtdshk4x4sfnycs [1/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/glibc-2.28-mqjolvbeskcnhz5chvtdshk4x4sfnycs + + + \==> Installing cmake-3.24.2-vc4y4c64s55j5u6kp37ciw2hcghuxhhc [2/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/cmake-3.24.2-vc4y4c64s55j5u6kp37ciw2hcghuxhhc + + + \==> Installing openmpi-4.0.2-ikhujrkyukytbkxxyk3mub44v63vuzfz [3/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/openmpi-4.0.2-ikhujrkyukytbkxxyk3mub44v63vuzfz + + + \==> Installing gmake-4.4.1-j6yscmmcn3qws7n35klote7rivw7foa6 [4/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/gmake-4.4.1-j6yscmmcn3qws7n35klote7rivw7foa6 + + + \==> Installing libaec-1.0.6-x4hw5jqq3zvnrgjicgweicomeaelulqq [5/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/libaec-1.0.6-x4hw5jqq3zvnrgjicgweicomeaelulqq + + + \==> Installing zlib-ng-2.1.6-wa2x7rho3km6qpiki56dpjlpsce4c5n6 [6/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/zlib-ng-2.1.6-wa2x7rho3km6qpiki56dpjlpsce4c5n6 + + + \==> Installing snappy-1.1.10-wk4pvrufyvy7v3hxn5nwa3i3fncp3azm [7/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/snappy-1.1.10-wk4pvrufyvy7v3hxn5nwa3i3fncp3azm + + + \==> Installing pkgconf-2.2.0-vrupasu7smpgcbarzpdwap45fcvjbjoa [8/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/pkgconf-2.2.0-vrupasu7smpgcbarzpdwap45fcvjbjoa + + + \==> Installing zstd-1.5.6-kzc7pcve7csxlonb2uaxzgyyuqfx6cz4 [9/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/zstd-1.5.6-kzc7pcve7csxlonb2uaxzgyyuqfx6cz4 + + + \==> Installing lz4-1.9.4-7a5olrrnewy7kmlh5x4bstziuheiqkz4 [10/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/lz4-1.9.4-7a5olrrnewy7kmlh5x4bstziuheiqkz4 + + + \==> Installing libiconv-1.17-55ipnyeeqcpbfgaqfanu36viaqqni3sx [11/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/libiconv-1.17-55ipnyeeqcpbfgaqfanu36viaqqni3sx + + + \==> Installing hdf5-1.14.3-aumsrgzvbh6grtyyegzuufilnqa7ftm7 [12/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/hdf5-1.14.3-aumsrgzvbh6grtyyegzuufilnqa7ftm7 + + + \==> Installing c-blosc-1.21.5-zrjfo567d2n6ctwayae77z3b54mf23yc [13/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/c-blosc-1.21.5-zrjfo567d2n6ctwayae77z3b54mf23yc + + + \==> Installing diffutils-3.10-y7n7vkngczu47neysm3retisvlsmw53l [14/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/diffutils-3.10-y7n7vkngczu47neysm3retisvlsmw53l + + + \==> Installing bzip2-1.0.8-357vng5dpd7w7s7lletycxccjbl45ngt [15/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/bzip2-1.0.8-357vng5dpd7w7s7lletycxccjbl45ngt + + + \==> Installing netcdf-c-4.9.2-vob7om32jopqwss5jilrdtqqogjvcmzb [16/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/netcdf-c-4.9.2-vob7om32jopqwss5jilrdtqqogjvcmzb + + + \==> Installing netcdf-fortran-4.6.1-ntfunrmysxanqqu7sqfmf66zdkd2xemy [17/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/netcdf-fortran-4.6.1-ntfunrmysxanqqu7sqfmf66zdkd2xemy + + + \==> Installing oasis3-mct-git.2023.11.09=2023.11.09-kok5n7hvm374eicnidcedxhgxmmytc2p [18/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/oasis3-mct-git.2023.11.09=2023.11.09-kok5n7hvm374eicnidcedxhgxmmytc2p + + + \==> Installing access-test-git.2024.09.20=2024.09.20-hmy75yl26hexivgsw7zhlvbnjgst3gwc [19/19] + + + [+] /g/data/$PROJECT/$USER/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/access-test-git.2024.09.20=2024.09.20-hmy75yl26hexivgsw7zhlvbnjgst3gwc + + + \==> Updating view at /g/data/$PROJECT/$USER/spack/0.22/environments/test/.spack-env/view + + + +!!! info + The full output has been truncated for brevity. + +### Check installed packages + +``` spack find +``` + + spack find + + \==> In environment test + + + \==> 1 root specs + + + [+] access-test@git.2024.09.20 + + + + \==> installed packages + + + -- linux-rocky8-x86_64 / intel@2021.10.0 ------------------------ + + + access-test@git.2024.09.20 + diffutils@3.10 + libaec@1.0.6 netcdf-fortran@4.6.1 snappy@1.1.10 + bzip2@1.0.8 + glibc@2.28 + libiconv@1.17 oasis3-mct@git.2023.11.09=2023.11.09 zlib-ng@2.1.6 + c-blosc@1.21.5 + gmake@4.4.1 + lz4@1.9.4 + openmpi@4.1.5 zstd@1.5.6 + cmake@3.24.2 + hdf5@1.14.3 + netcdf-c@4.9.2 + pkgconf@2.2.0 + + \==> 19 installed packages + + +### Cleanup +``` spack uninstall --remove --all spack env deactivate spack env rm test @@ -73,9 +353,13 @@ rm -rf ACCESS-TEST Keep your Spack instance up-to-date by doing the following: ``` -cd spack/0.22 +cd /g/data/$PROJECT/$USER/spack/0.22 git -C spack fetch --all -Pp git -C spack reset --hard origin/releases/v0.22 git -C spack-config pull git -C spack-packages pull ``` + + +- [https://spack.readthedocs.io/en/latest/](https://spack.readthedocs.io/en/latest/) + \ No newline at end of file diff --git a/docs/models/run-a-model/build_a_model.md b/docs/models/run-a-model/build_a_model.md index f5928190a..a7eee70e8 100644 --- a/docs/models/run-a-model/build_a_model.md +++ b/docs/models/run-a-model/build_a_model.md @@ -1,5 +1,6 @@ !!! danger - This page is tailored to experienced users and collaborators developing ACCESS models. + This page is tailored to experienced users and collaborators developing ACCESS models.
+ This step is *not* required if you *only* want to run a model. If you are looking for information on how to run a model, refer to the [Run a Model](/models/run-a-model) section. {% set esm1_5_build_config = "https://github.com/ACCESS-NRI/ACCESS-ESM1.5" %} {% set spack_setup = "/getting_started/spack" %} @@ -18,9 +19,6 @@ As an example, in the following instructions we will show how to build a modifie !!! tip The instructions below remain valid (with simple tweaks) for any model or package. - -If you are looking for information on how to run a model, refer to the [Run a Model](/models/run-a-model) section. - ## Prerequisites - **NCI account**
@@ -79,9 +77,9 @@ spack env create mom5_dev ACCESS-ESM1.5/spack.yaml remote: Total 29 (delta 6), reused 3 (delta 1), pack-reused 10 (from 1) Receiving objects: 100% (29/29), 16.40 KiB | 2.38 MiB/s, done. Resolving deltas: 100% (6/6), done. - spack env create mom5_dev - \==> Created environment mom5_dev in: /g/data/$PROJECT/$USER/spack/0.22/environments/mom5_dev - \==> Activate with: spack env activate mom5_dev + spack env create mom5_dev ACCESS-ESM1.5/spack.yaml + \==> Created environment mom5_dev in: /g/data/$PROJECT/$USER/spack/0.22/environments/mom5_dev + \==> Activate with: spack env activate mom5_dev The newly-created `mom5_dev` _Spack_ environment folder is `/g/data/$PROJECT/$USER/spack/0.22/environments/mom5_dev`. @@ -93,7 +91,7 @@ spack env activate -p mom5_dev ``` spack env activate -p mom5_dev - + ## Compile Spack environment packages (optional) @@ -114,62 +112,62 @@ spack concretize -f --fresh This command might take a few minutes to complete - + spack concretize -f --fresh - \==> Concretized access-esm1p5@git.2024.05.1=2024.05.1 + \==> Concretized access-esm1p5@git.2024.05.1=2024.05.1 - - nkvasig access-esm1p5@git.2024.05.1=2024.05.1%intel@19.0.3.199 build_system=bundle arch=linux-rocky8-x86_64_v4 + - nkvasig access-esm1p5@git.2024.05.1=2024.05.1%intel@19.0.3.199 build_system=bundle arch=linux-rocky8-x86_64_v4 - - hhtnigw ^cice4@git.2024.05.21=access-esm1.5%intel@19.0.3.199 build_system=makefile arch=linux-rocky8-x86_64_v4 + - hhtnigw ^cice4@git.2024.05.21=access-esm1.5%intel@19.0.3.199 build_system=makefile arch=linux-rocky8-x86_64_v4 - - j6yscmm ^gmake@4.4.1%intel@19.0.3.199~guile build_system=generic arch=linux-rocky8-x86_64_v4 + - j6yscmm ^gmake@4.4.1%intel@19.0.3.199~guile build_system=generic arch=linux-rocky8-x86_64_v4 - - 5xcyy2h ^netcdf-fortran@4.5.2%intel@19.0.3.199\~doc+pic+shared build_system=autotools patches=b050dbd arch=linux-rocky8-x86_64_v4 + - 5xcyy2h ^netcdf-fortran@4.5.2%intel@19.0.3.199\~doc+pic+shared build_system=autotools patches=b050dbd arch=linux-rocky8-x86_64_v4 - - py3awb7 ^oasis3-mct@git.access-esm1.5_2024.05.24=access-esm1.5%intel@19.0.3.199\~deterministic\~optimisation_report build_system=makefile arch=linux-rocky8-x86_64_v4 + - py3awb7 ^oasis3-mct@git.access-esm1.5_2024.05.24=access-esm1.5%intel@19.0.3.199\~deterministic\~optimisation_report build_system=makefile arch=linux-rocky8-x86_64_v4 - - yfo7fum ^hdf5@1.10.11%intel@19.0.3.199\~cxx\~fortran+hl\~ipo\~java+mpi+shared\~szip\~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64_v4 + - yfo7fum ^hdf5@1.10.11%intel@19.0.3.199\~cxx\~fortran+hl\~ipo\~java+mpi+shared\~szip\~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64_v4 - [e] vc4y4c6 ^cmake@3.24.2%intel@19.0.3.199\~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rocky8-x86_64_v4 + [e] vc4y4c6 ^cmake@3.24.2%intel@19.0.3.199\~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rocky8-x86_64_v4 - - ugenh6g ^pkgconf@2.2.0%intel@19.0.3.199 build_system=autotools arch=linux-rocky8-x86_64_v4 + - ugenh6g ^pkgconf@2.2.0%intel@19.0.3.199 build_system=autotools arch=linux-rocky8-x86_64_v4 - - h45fvyw ^zlib-ng@2.1.6%intel@19.0.3.199+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-rocky8-x86_64_v4 + - h45fvyw ^zlib-ng@2.1.6%intel@19.0.3.199+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-rocky8-x86_64_v4 - [e] ikhujrk ^openmpi@4.0.2%intel@19.0.3.199\~atomics\~cuda\~cxx\~cxx_exceptions\~gpfs\~internal-hwloc\~internal-libevent\~internal-pmix\~java\~legacylaunchers\~lustre\~memchecker\~openshmem\~orterunprefix\~romio+rsh\~singularity\~static+vt+wrapper-rpath build_system=autotools fabrics=none patches=073477a,60ce20b romio-filesystem=none schedulers=none arch=linux-rocky8-x86_64_v4 + [e] ikhujrk ^openmpi@4.0.2%intel@19.0.3.199\~atomics\~cuda\~cxx\~cxx_exceptions\~gpfs\~internal-hwloc\~internal-libevent\~internal-pmix\~java\~legacylaunchers\~lustre\~memchecker\~openshmem\~orterunprefix\~romio+rsh\~singularity\~static+vt+wrapper-rpath build_system=autotools fabrics=none patches=073477a,60ce20b romio-filesystem=none schedulers=none arch=linux-rocky8-x86_64_v4 - [e] mqjolvb ^glibc@2.28%intel@19.0.3.199 build_system=autotools arch=linux-rocky8-x86_64_v4 + [e] mqjolvb ^glibc@2.28%intel@19.0.3.199 build_system=autotools arch=linux-rocky8-x86_64_v4 - - oopqoqg ^mom5@git.access-esm1.5_2024.08.23=access-esm1.5%intel@19.0.3.199\~deterministic\~optimisation_report+restart_repro build_system=makefile type=ACCESS-CM arch=linux-rocky8-x86_64_v4 + - oopqoqg ^mom5@git.access-esm1.5_2024.08.23=access-esm1.5%intel@19.0.3.199\~deterministic\~optimisation_report+restart_repro build_system=makefile type=ACCESS-CM arch=linux-rocky8-x86_64_v4 - - 725rz7c ^netcdf-c@4.7.4%intel@19.0.3.199\~blosc\~byterange\~dap\~fsync\~hdf4\~jna+mpi\~nczarr_zip+optimize\~parallel-netcdf+pic+shared\~szip\~zstd build_system=autotools arch=linux-rocky8-x86_64_v4 + - 725rz7c ^netcdf-c@4.7.4%intel@19.0.3.199\~blosc\~byterange\~dap\~fsync\~hdf4\~jna+mpi\~nczarr_zip+optimize\~parallel-netcdf+pic+shared\~szip\~zstd build_system=autotools arch=linux-rocky8-x86_64_v4 - - udr7pbn ^um7@git.2024.07.03=access-esm1.5%intel@19.0.3.199 build_system=generic optim=high arch=linux-rocky8-x86_64_v4 + - udr7pbn ^um7@git.2024.07.03=access-esm1.5%intel@19.0.3.199 build_system=generic optim=high arch=linux-rocky8-x86_64_v4 - - qy5w2d7 ^dummygrib@1.0%intel@19.0.3.199 build_system=makefile arch=linux-rocky8-x86_64_v4 + - qy5w2d7 ^dummygrib@1.0%intel@19.0.3.199 build_system=makefile arch=linux-rocky8-x86_64_v4 - - ho2ie66 ^fcm@2021.05.0%intel@19.0.3.199 build_system=generic site=none arch=linux-rocky8-x86_64_v4 + - ho2ie66 ^fcm@2021.05.0%intel@19.0.3.199 build_system=generic site=none arch=linux-rocky8-x86_64_v4 - - xalavwv ^gcom4@git.2024.05.28=access-esm1.5%intel@19.0.3.199+mpi build_system=generic arch=linux-rocky8-x86_64_v4 + - xalavwv ^gcom4@git.2024.05.28=access-esm1.5%intel@19.0.3.199+mpi build_system=generic arch=linux-rocky8-x86_64_v4 @@ -185,111 +183,111 @@ spack install Subsequent installations, however, will compile quicker as the built dependencies are reused. - spack install + spack install - \==> Installing glibc-2.28-mqjolvbeskcnhz5chvtdshk4x4sfnycs [1/17] + \==> Installing glibc-2.28-mqjolvbeskcnhz5chvtdshk4x4sfnycs [1/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/glibc-2.28-mqjolvbeskcnhz5chvtdshk4x4sfnycs + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/glibc-2.28-mqjolvbeskcnhz5chvtdshk4x4sfnycs - \==> Installing cmake-3.24.2-vc4y4c64s55j5u6kp37ciw2hcghuxhhc [2/17] + \==> Installing cmake-3.24.2-vc4y4c64s55j5u6kp37ciw2hcghuxhhc [2/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cmake-3.24.2-vc4y4c64s55j5u6kp37ciw2hcghuxhhc + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cmake-3.24.2-vc4y4c64s55j5u6kp37ciw2hcghuxhhc - \==> Installing openmpi-4.0.2-ikhujrkyukytbkxxyk3mub44v63vuzfz [3/17] + \==> Installing openmpi-4.0.2-ikhujrkyukytbkxxyk3mub44v63vuzfz [3/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/openmpi-4.0.2-ikhujrkyukytbkxxyk3mub44v63vuzfz + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/openmpi-4.0.2-ikhujrkyukytbkxxyk3mub44v63vuzfz - \==> Installing gmake-4.4.1-j6yscmmcn3qws7n35klote7rivw7foa6 [4/17] + \==> Installing gmake-4.4.1-j6yscmmcn3qws7n35klote7rivw7foa6 [4/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/gmake-4.4.1-j6yscmmcn3qws7n35klote7rivw7foa6 + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/gmake-4.4.1-j6yscmmcn3qws7n35klote7rivw7foa6 - \==> Installing fcm-2021.05.0-ho2ie66tizhxpjjiilnrjnlnbi6safwq [5/17] + \==> Installing fcm-2021.05.0-ho2ie66tizhxpjjiilnrjnlnbi6safwq [5/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/fcm-2021.05.0-ho2ie66tizhxpjjiilnrjnlnbi6safwq + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/fcm-2021.05.0-ho2ie66tizhxpjjiilnrjnlnbi6safwq - \==> Installing zlib-ng-2.1.6-h45fvywj47wc4uwa37mfzkdsqrgcqxux [6/17] + \==> Installing zlib-ng-2.1.6-h45fvywj47wc4uwa37mfzkdsqrgcqxux [6/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/zlib-ng-2.1.6-h45fvywj47wc4uwa37mfzkdsqrgcqxux + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/zlib-ng-2.1.6-h45fvywj47wc4uwa37mfzkdsqrgcqxux - \==> Installing dummygrib-1.0-qy5w2d7tmsbmvnqng2xlopdkd4m2grvb [7/17] + \==> Installing dummygrib-1.0-qy5w2d7tmsbmvnqng2xlopdkd4m2grvb [7/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/dummygrib-1.0-qy5w2d7tmsbmvnqng2xlopdkd4m2grvb + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/dummygrib-1.0-qy5w2d7tmsbmvnqng2xlopdkd4m2grvb - \==> Installing pkgconf-2.2.0-ugenh6g4dnhti4p6ktbkfku6pzlq5fkr [8/17] + \==> Installing pkgconf-2.2.0-ugenh6g4dnhti4p6ktbkfku6pzlq5fkr [8/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/pkgconf-2.2.0-ugenh6g4dnhti4p6ktbkfku6pzlq5fkr + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/pkgconf-2.2.0-ugenh6g4dnhti4p6ktbkfku6pzlq5fkr - \==> Installing gcom4-git.2024.05.28=access-esm1.5-xalavwvyp3jv6emsnj7yecrqprwp3kag [9/17] + \==> Installing gcom4-git.2024.05.28=access-esm1.5-xalavwvyp3jv6emsnj7yecrqprwp3kag [9/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/gcom4-git.2024.05.28_access-esm1.5-xalavwvyp3jv6emsnj7yecrqprwp3kag + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/gcom4-git.2024.05.28_access-esm1.5-xalavwvyp3jv6emsnj7yecrqprwp3kag - \==> Installing hdf5-1.10.11-yfo7fumh2agj6itfzqa6l2dpccrypp2l [10/17] + \==> Installing hdf5-1.10.11-yfo7fumh2agj6itfzqa6l2dpccrypp2l [10/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/hdf5-1.10.11-yfo7fumh2agj6itfzqa6l2dpccrypp2l + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/hdf5-1.10.11-yfo7fumh2agj6itfzqa6l2dpccrypp2l - \==> Installing netcdf-c-4.7.4-725rz7cn7qupsi4egyeaix2crssvtoxp [11/17] + \==> Installing netcdf-c-4.7.4-725rz7cn7qupsi4egyeaix2crssvtoxp [11/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/netcdf-c-4.7.4-725rz7cn7qupsi4egyeaix2crssvtoxp + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/netcdf-c-4.7.4-725rz7cn7qupsi4egyeaix2crssvtoxp - \==> Installing netcdf-fortran-4.5.2-5xcyy2h34vaq77ouwsgd6lfes5zycoii [12/17] + \==> Installing netcdf-fortran-4.5.2-5xcyy2h34vaq77ouwsgd6lfes5zycoii [12/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/netcdf-fortran-4.5.2-5xcyy2h34vaq77ouwsgd6lfes5zycoii + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/netcdf-fortran-4.5.2-5xcyy2h34vaq77ouwsgd6lfes5zycoii - \==> Installing oasis3-mct-git.access-esm1.5_2024.05.24=access-esm1.5-py3awb76nw3lwjw5ea3uktmh2nm254gi [13/17] + \==> Installing oasis3-mct-git.access-esm1.5_2024.05.24=access-esm1.5-py3awb76nw3lwjw5ea3uktmh2nm254gi [13/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/oasis3-mct-git.access-esm1.5_2024.05.24_access-esm1.5-py3awb76nw3lwjw5ea3uktmh2nm254gi + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/oasis3-mct-git.access-esm1.5_2024.05.24_access-esm1.5-py3awb76nw3lwjw5ea3uktmh2nm254gi - \==> Installing mom5-git.access-esm1.5_2024.08.23=access-esm1.5-oopqoqgqu65cybqht23l6m6coxbrpzqh [14/17] + \==> Installing mom5-git.access-esm1.5_2024.08.23=access-esm1.5-oopqoqgqu65cybqht23l6m6coxbrpzqh [14/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/mom5-git.access-esm1.5_2024.08.23_access-esm1.5-oopqoqgqu65cybqht23l6m6coxbrpzqh + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/mom5-git.access-esm1.5_2024.08.23_access-esm1.5-oopqoqgqu65cybqht23l6m6coxbrpzqh - \==> Installing um7-git.2024.07.03=access-esm1.5-udr7pbnflpwzuawejuuc4xpmfuwtpc4x [15/17] + \==> Installing um7-git.2024.07.03=access-esm1.5-udr7pbnflpwzuawejuuc4xpmfuwtpc4x [15/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/um7-git.2024.07.03_access-esm1.5-udr7pbnflpwzuawejuuc4xpmfuwtpc4x + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/um7-git.2024.07.03_access-esm1.5-udr7pbnflpwzuawejuuc4xpmfuwtpc4x - \==> Installing cice4-git.2024.05.21=access-esm1.5-hhtnigwxdyz7ta4dv3gvhwulze6hxqra [16/17] + \==> Installing cice4-git.2024.05.21=access-esm1.5-hhtnigwxdyz7ta4dv3gvhwulze6hxqra [16/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cice4-git.2024.05.21_access-esm1.5-hhtnigwxdyz7ta4dv3gvhwulze6hxqra + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cice4-git.2024.05.21_access-esm1.5-hhtnigwxdyz7ta4dv3gvhwulze6hxqra - \==> Installing access-esm1p5-git.2024.05.1=2024.05.1-nkvasig2zrq2ocz6evva6bmurdq7nh3h [17/17] + \==> Installing access-esm1p5-git.2024.05.1=2024.05.1-nkvasig2zrq2ocz6evva6bmurdq7nh3h [17/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/access-esm1p5-git.2024.05.1_2024.05.1-nkvasig2zrq2ocz6evva6bmurdq7nh3h + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/access-esm1p5-git.2024.05.1_2024.05.1-nkvasig2zrq2ocz6evva6bmurdq7nh3h - \==> Updating view at /home/565/$USER/myspack/environments/mom5_dev/.spack-env/view + \==> Updating view at /g/data/$PROJECT/$USER/spack/0.22/environments/mom5_dev/.spack-env/view @@ -344,7 +342,7 @@ For example, to retrieve the tag for the original `mom5` package used in the `mo spack find mom5 ``` - spack find mom5 + spack find mom5 mom5@git.access-esm1.5_2024.08.23=access-esm1.5 @@ -380,123 +378,123 @@ spack install Although this time the `spack install` command will only build the development package, it might still take a long time to complete, depending on the specific package. - + spack concretize -f --fresh - \==> Concretized access-esm1p5@git.2024.05.1=2024.05.1 + \==> Concretized access-esm1p5@git.2024.05.1=2024.05.1 - - aysea5r access-esm1p5@git.2024.05.1=2024.05.1%intel@19.0.3.199 build_system=bundle arch=linux-rocky8-x86_64_v4 + - aysea5r access-esm1p5@git.2024.05.1=2024.05.1%intel@19.0.3.199 build_system=bundle arch=linux-rocky8-x86_64_v4 - [+] hhtnigw ^cice4@git.2024.05.21=access-esm1.5%intel@19.0.3.199 build_system=makefile arch=linux-rocky8-x86_64_v4 + [+] hhtnigw ^cice4@git.2024.05.21=access-esm1.5%intel@19.0.3.199 build_system=makefile arch=linux-rocky8-x86_64_v4 - [+] j6yscmm ^gmake@4.4.1%intel@19.0.3.199\~guile build_system=generic arch=linux-rocky8-x86_64_v4 + [+] j6yscmm ^gmake@4.4.1%intel@19.0.3.199\~guile build_system=generic arch=linux-rocky8-x86_64_v4 - [+] 5xcyy2h ^netcdf-fortran@4.5.2%intel@19.0.3.199\~doc+pic+shared build_system=autotools patches=b050dbd arch=linux-rocky8-x86_64_v4 + [+] 5xcyy2h ^netcdf-fortran@4.5.2%intel@19.0.3.199\~doc+pic+shared build_system=autotools patches=b050dbd arch=linux-rocky8-x86_64_v4 - [+] py3awb7 ^oasis3-mct@git.access-esm1.5_2024.05.24=access-esm1.5%intel@19.0.3.199\~deterministic\~optimisation_report build_system=makefile arch=linux-rocky8-x86_64_v4 + [+] py3awb7 ^oasis3-mct@git.access-esm1.5_2024.05.24=access-esm1.5%intel@19.0.3.199\~deterministic\~optimisation_report build_system=makefile arch=linux-rocky8-x86_64_v4 - [+] yfo7fum ^hdf5@1.10.11%intel@19.0.3.199\~cxx\~fortran+hl\~ipo\~java+mpi+shared\~szip\~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64_v4 + [+] yfo7fum ^hdf5@1.10.11%intel@19.0.3.199\~cxx\~fortran+hl\~ipo\~java+mpi+shared\~szip\~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64_v4 - [e] vc4y4c6 ^cmake@3.24.2%intel@19.0.3.199\~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rocky8-x86_64_v4 + [e] vc4y4c6 ^cmake@3.24.2%intel@19.0.3.199\~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rocky8-x86_64_v4 - [+] ugenh6g ^pkgconf@2.2.0%intel@19.0.3.199 build_system=autotools arch=linux-rocky8-x86_64_v4 + [+] ugenh6g ^pkgconf@2.2.0%intel@19.0.3.199 build_system=autotools arch=linux-rocky8-x86_64_v4 - [+] h45fvyw ^zlib-ng@2.1.6%intel@19.0.3.199+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-rocky8-x86_64_v4 + [+] h45fvyw ^zlib-ng@2.1.6%intel@19.0.3.199+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-rocky8-x86_64_v4 - [e] ikhujrk ^openmpi@4.0.2%intel@19.0.3.199\~atomics\~cuda\~cxx\~cxx_exceptions\~gpfs\~internal-hwloc\~internal-libevent\~internal-pmix\~java\~legacylaunchers\~lustre\~memchecker\~openshmem\~orterunprefix\~romio+rsh\~singularity\~static+vt+wrapper-rpath build_system=autotools fabrics=none patches=073477a,60ce20b romio-filesystem=none schedulers=none arch=linux-rocky8-x86_64_v4 + [e] ikhujrk ^openmpi@4.0.2%intel@19.0.3.199\~atomics\~cuda\~cxx\~cxx_exceptions\~gpfs\~internal-hwloc\~internal-libevent\~internal-pmix\~java\~legacylaunchers\~lustre\~memchecker\~openshmem\~orterunprefix\~romio+rsh\~singularity\~static+vt+wrapper-rpath build_system=autotools fabrics=none patches=073477a,60ce20b romio-filesystem=none schedulers=none arch=linux-rocky8-x86_64_v4 - [e] mqjolvb ^glibc@2.28%intel@19.0.3.199 build_system=autotools arch=linux-rocky8-x86_64_v4 + [e] mqjolvb ^glibc@2.28%intel@19.0.3.199 build_system=autotools arch=linux-rocky8-x86_64_v4 - - oopqoqg ^mom5@git.access-esm1.5_2024.08.23=access-esm1.5%intel@19.0.3.199\~deterministic\~optimisation_report+restart_repro build_system=makefile dev_path=/path/to/source/code/for/mom5 type=ACCESS-CM arch=linux-rocky8-x86_64_v4 + - oopqoqg ^mom5@git.access-esm1.5_2024.08.23=access-esm1.5%intel@19.0.3.199\~deterministic\~optimisation_report+restart_repro build_system=makefile dev_path=/path/to/source/code/for/mom5 type=ACCESS-CM arch=linux-rocky8-x86_64_v4 - [+] 725rz7c ^netcdf-c@4.7.4%intel@19.0.3.199\~blosc\~byterange\~dap\~fsync\~hdf4\~jna+mpi\~nczarr_zip+optimize\~parallel-netcdf+pic+shared\~szip\~zstd build_system=autotools arch=linux-rocky8-x86_64_v4 + [+] 725rz7c ^netcdf-c@4.7.4%intel@19.0.3.199\~blosc\~byterange\~dap\~fsync\~hdf4\~jna+mpi\~nczarr_zip+optimize\~parallel-netcdf+pic+shared\~szip\~zstd build_system=autotools arch=linux-rocky8-x86_64_v4 - [+] udr7pbn ^um7@git.2024.07.03=access-esm1.5%intel@19.0.3.199 build_system=generic optim=high arch=linux-rocky8-x86_64_v4 + [+] udr7pbn ^um7@git.2024.07.03=access-esm1.5%intel@19.0.3.199 build_system=generic optim=high arch=linux-rocky8-x86_64_v4 - [+] qy5w2d7 ^dummygrib@1.0%intel@19.0.3.199 build_system=makefile arch=linux-rocky8-x86_64_v4 + [+] qy5w2d7 ^dummygrib@1.0%intel@19.0.3.199 build_system=makefile arch=linux-rocky8-x86_64_v4 - [+] ho2ie66 ^fcm@2021.05.0%intel@19.0.3.199 build_system=generic site=none arch=linux-rocky8-x86_64_v4 + [+] ho2ie66 ^fcm@2021.05.0%intel@19.0.3.199 build_system=generic site=none arch=linux-rocky8-x86_64_v4 - [+] xalavwv ^gcom4@git.2024.05.28=access-esm1.5%intel@19.0.3.199+mpi build_system=generic arch=linux-rocky8-x86_64_v4 + [+] xalavwv ^gcom4@git.2024.05.28=access-esm1.5%intel@19.0.3.199+mpi build_system=generic arch=linux-rocky8-x86_64_v4 - spack install + spack install - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/glibc-2.28-mqjolvbeskcnhz5chvtdshk4x4sfnycs + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/glibc-2.28-mqjolvbeskcnhz5chvtdshk4x4sfnycs - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cmake-3.24.2-vc4y4c64s55j5u6kp37ciw2hcghuxhhc + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cmake-3.24.2-vc4y4c64s55j5u6kp37ciw2hcghuxhhc - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/openmpi-4.0.2-ikhujrkyukytbkxxyk3mub44v63vuzfz + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/openmpi-4.0.2-ikhujrkyukytbkxxyk3mub44v63vuzfz - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/gmake-4.4.1-j6yscmmcn3qws7n35klote7rivw7foa6 + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/gmake-4.4.1-j6yscmmcn3qws7n35klote7rivw7foa6 - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/fcm-2021.05.0-ho2ie66tizhxpjjiilnrjnlnbi6safwq + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/fcm-2021.05.0-ho2ie66tizhxpjjiilnrjnlnbi6safwq - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/zlib-ng-2.1.6-h45fvywj47wc4uwa37mfzkdsqrgcqxux + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/zlib-ng-2.1.6-h45fvywj47wc4uwa37mfzkdsqrgcqxux - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/dummygrib-1.0-qy5w2d7tmsbmvnqng2xlopdkd4m2grvb + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/dummygrib-1.0-qy5w2d7tmsbmvnqng2xlopdkd4m2grvb - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/pkgconf-2.2.0-ugenh6g4dnhti4p6ktbkfku6pzlq5fkr + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/pkgconf-2.2.0-ugenh6g4dnhti4p6ktbkfku6pzlq5fkr - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/gcom4-git.2024.05.28_access-esm1.5-xalavwvyp3jv6emsnj7yecrqprwp3kag + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/gcom4-git.2024.05.28_access-esm1.5-xalavwvyp3jv6emsnj7yecrqprwp3kag - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/hdf5-1.10.11-yfo7fumh2agj6itfzqa6l2dpccrypp2l + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/hdf5-1.10.11-yfo7fumh2agj6itfzqa6l2dpccrypp2l - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/netcdf-c-4.7.4-725rz7cn7qupsi4egyeaix2crssvtoxp + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/netcdf-c-4.7.4-725rz7cn7qupsi4egyeaix2crssvtoxp - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/netcdf-fortran-4.5.2-5xcyy2h34vaq77ouwsgd6lfes5zycoii + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/netcdf-fortran-4.5.2-5xcyy2h34vaq77ouwsgd6lfes5zycoii - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/oasis3-mct-git.access-esm1.5_2024.05.24_access-esm1.5-py3awb76nw3lwjw5ea3uktmh2nm254gi + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/oasis3-mct-git.access-esm1.5_2024.05.24_access-esm1.5-py3awb76nw3lwjw5ea3uktmh2nm254gi - \==> Installing mom5-git.access-esm1.5_2024.08.23=access-esm1.5-l34w7is54xzer7s4ztvb5ymgjbtduknh [14/17] + \==> Installing mom5-git.access-esm1.5_2024.08.23=access-esm1.5-l34w7is54xzer7s4ztvb5ymgjbtduknh [14/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/mom5-git.access-esm1.5_2024.08.23_access-esm1.5-l34w7is54xzer7s4ztvb5ymgjbtduknh + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/mom5-git.access-esm1.5_2024.08.23_access-esm1.5-l34w7is54xzer7s4ztvb5ymgjbtduknh - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/um7-git.2024.07.03_access-esm1.5-udr7pbnflpwzuawejuuc4xpmfuwtpc4x + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/um7-git.2024.07.03_access-esm1.5-udr7pbnflpwzuawejuuc4xpmfuwtpc4x - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cice4-git.2024.05.21_access-esm1.5-hhtnigwxdyz7ta4dv3gvhwulze6hxqra + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cice4-git.2024.05.21_access-esm1.5-hhtnigwxdyz7ta4dv3gvhwulze6hxqra - \==> Installing access-esm1p5-git.2024.05.1_2024.05.1-nkvasig2zrq2ocz6evva6bmurdq7nh3h [17/17] + \==> Installing access-esm1p5-git.2024.05.1_2024.05.1-nkvasig2zrq2ocz6evva6bmurdq7nh3h [17/17] - [+] /home/565/$USER/myspack/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/access-esm1p5-git.2024.05.1_2024.05.1-nkvasig2zrq2ocz6evva6bmurdq7nh3h + [+] /g/data/$PROJECT/$USER/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/access-esm1p5-git.2024.05.1_2024.05.1-nkvasig2zrq2ocz6evva6bmurdq7nh3h - \==> Updating view at /home/565/$USER/myspack/environments/mom5_dev/.spack-env/view + \==> Updating view at /g/data/$PROJECT/$USER/spack/0.22/environments/mom5_dev/.spack-env/view @@ -533,48 +531,19 @@ _Spack_ prints out the error message and generates a full build log that can be For example, if we try to install the `mom5_dev` environment with an error in the new `mom5` source code (in this example a `use` statement in the `/src/accessom_coupler/ocean_solo.F90` file has been purposely commented out to force an error in compilation), we might get an output error similar to the following: -
...
- >> 415    /home/565/dm5220/myspack/environments/mom5_dev/mom5/src/access_coupler/ocean_solo.F90:224: undefined reference to `constant s_init_'
- >> 416    make: *** [Makefile:931: fms_ACCESS-CM.x] Error 1
-...
+
...
+ >> 415    /g/data/$PROJECT/$USER/spack/0.22/environments/mom5_dev/mom5/src/access_coupler/ocean_solo.F90:224: undefined reference to `constant s_init_'
+ >> 416    make: *** [Makefile:931: fms_ACCESS-CM.x] Error 1
+...
 See build log for details:
   /scratch/$PROJECT/$USER/tmp/path/to/the/spack-stage-mom5-git.access-esm1.5_2024.08.23_access-esm1.5-l34w7is54xzer7s4ztvb5ymgjbtduknh/spack-build-out.txt
-...
-==> Error: access-esm1p5-git.2024.05.1=2024.05.1-aysea5r7rbwy22lluvl64baperlokktv: Package was not installed
-==> Error: Installation request failed.  Refer to reported errors for failing package(s).

+...
+==> Error: access-esm1p5-git.2024.05.1=2024.05.1-aysea5r7rbwy22lluvl64baperlokktv: Package was not installed
+==> Error: Installation request failed.  Refer to reported errors for failing package(s).
If the error is not obvious from the error message, see the build log for more information. - [https://spack.readthedocs.io/en/latest/](https://spack.readthedocs.io/en/latest/) - [https://spack-tutorial.readthedocs.io/en/latest/tutorial_developer_workflows.html](https://spack-tutorial.readthedocs.io/en/latest/tutorial_developer_workflows.html) - - - - + \ No newline at end of file