test-coverage.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures?
# Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

name: Generate Coverage Report

jobs:
  test-coverage:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      NOT_CRAN: true

    steps:
      - name: Checkout ACRO
        uses: actions/checkout@v4

      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.11'

      - name: Setup R
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: 'release'

      - name: Install R dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: covr
          needs: coverage
          cache-version: 2

      - name: Generate xml Report
        run: |
          covr::to_cobertura(
            covr::package_coverage(),
            filename = "coverage.xml"
          )
        shell: Rscript {0}

      - name: Upload Report to Codecov
        uses: codecov/codecov-action@v4
        with:
          fail_ci_if_error: true
          token: ${{ secrets.CODECOV_TOKEN }}
          verbose: true