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input subject: sub-OAS30001_ses-d0129_run-01_T1w /bin/sh: /HippMapp3r/depends/c3d/bin/c3d: cannot execute binary file #36

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Thinking-leaf opened this issue Feb 19, 2022 · 1 comment

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@Thinking-leaf
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I try to run the code on my MacBook. After input the image, the first error is that the terminal cannot excuse the c3d, after carefully check, I found that the file is "ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked, interpreter /lib64/ld-linux-x86-64.so.2, for GNU/Linux 2.6.18" , so it is unable to run it successfully on the MacBook.
After appearing this error, then I was informed that
'Warning: input image is not in RPI or LPI orientation..
re-orienting image to standard orientation based on orient tags (please make sure they are correct)'
I think this is due to inability to excuse c3d file.
This makes the "standardized_cropped.nii.gz" didn't appear in the preprocess document.
So how can I solve it?

@Thinking-leaf
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Besides, I could't run the code in the anaconda, because the tensor flow version can't be 1.15even after I set a virtual environment. so I have to run all via a terminal window, and have to install fsl and some other packages, really troublesome.
Is there any way help me to run the code in Anaconda with python3.9?

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