diff --git a/documentation/amici_refs.bib b/documentation/amici_refs.bib
index 550a58ecc6..b14d0e18b0 100644
--- a/documentation/amici_refs.bib
+++ b/documentation/amici_refs.bib
@@ -1196,16 +1196,6 @@ @Article{TunedalVio2023
url = {https://physoc.onlinelibrary.wiley.com/doi/abs/10.1113/JP284652},
}
-@Unknown{HasenauerMer2023,
- author = {Hasenauer, Jan and Merkt, Simon and Ali, Solomon and Gudina, Esayas and Adissu, Wondimagegn and Münchhoff, Maximilian and Graf, Alexander and Krebs, Stefan and Elsbernd, Kira and Kisch, Rebecca and Sirgu, Sisay and Fantahun, Bereket and Bekele, Delayehu and Rubio-Acero, Raquel and Gashaw, Mulatu and Girma, Eyob and Yilma, Daniel and Zeynudin, Ahmed and Paunovic, Ivana and Wieser, Andreas},
- creationdate = {2023-09-19T09:21:01},
- doi = {10.21203/rs.3.rs-3307821/v1},
- modificationdate = {2023-09-19T09:21:01},
- month = {09},
- title = {Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity},
- year = {2023},
-}
-
@Article{RaimundezFed2023,
author = {Elba Raim{\'{u}}ndez and Michael Fedders and Jan Hasenauer},
journal = {{iScience}},
@@ -1306,6 +1296,42 @@ @Article{DoresicGre2024
url = {https://www.biorxiv.org/content/early/2024/01/30/2024.01.26.577371},
}
+@Article{MerktAli2024,
+ author = {Merkt, Simon and Ali, Solomon and Gudina, Esayas Kebede and Adissu, Wondimagegn and Gize, Addisu and Muenchhoff, Maximilian and Graf, Alexander and Krebs, Stefan and Elsbernd, Kira and Kisch, Rebecca and Betizazu, Sisay Sirgu and Fantahun, Bereket and Bekele, Delayehu and Rubio-Acero, Raquel and Gashaw, Mulatu and Girma, Eyob and Yilma, Daniel and Zeynudin, Ahmed and Paunovic, Ivana and Hoelscher, Michael and Blum, Helmut and Hasenauer, Jan and Kroidl, Arne and Wieser, Andreas},
+ journal = {Nature Communications},
+ title = {Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity},
+ year = {2024},
+ issn = {2041-1723},
+ month = apr,
+ number = {1},
+ volume = {15},
+ creationdate = {2024-04-29T08:30:06},
+ doi = {10.1038/s41467-024-47556-2},
+ modificationdate = {2024-04-29T08:30:06},
+ publisher = {Springer Science and Business Media LLC},
+}
+
+@Misc{LakrisenkoPat2024,
+ author = {Polina Lakrisenko and Dilan Pathirana and Daniel Weindl and Jan Hasenauer},
+ title = {Exploration of methods for computing sensitivities in ODE models at dynamic and steady states},
+ year = {2024},
+ archiveprefix = {arXiv},
+ creationdate = {2024-05-30T09:48:00},
+ eprint = {2405.16524},
+ modificationdate = {2024-05-30T09:48:00},
+ primaryclass = {q-bio.QM},
+}
+
+@PhdThesis{Mutsuddy2024,
+ author = {Mutsuddy, Arnab},
+ school = {Clemson University},
+ title = {Single cell pharmacodynamic modeling of cancer cell lines},
+ year = {2024},
+ creationdate = {2024-05-30T09:51:58},
+ modificationdate = {2024-05-30T09:53:40},
+ url = {https://tigerprints.clemson.edu/all_dissertations/3572},
+}
+
@Comment{jabref-meta: databaseType:bibtex;}
@Comment{jabref-meta: grouping:
diff --git a/documentation/references.md b/documentation/references.md
index 0a2759f4eb..f17da06c55 100644
--- a/documentation/references.md
+++ b/documentation/references.md
@@ -1,6 +1,6 @@
# References
-List of publications using AMICI. Total number is 85.
+List of publications using AMICI. Total number is 87.
If you applied AMICI in your work and your publication is missing, please let us know via a new GitHub issue.
@@ -29,6 +29,12 @@ complex.” Nucleic Acids Research, February,
gkae123. https://doi.org/10.1093/nar/gkae123.
+
+Lakrisenko, Polina, Dilan Pathirana, Daniel Weindl, and Jan Hasenauer.
+2024.
“Exploration of Methods for Computing Sensitivities in ODE
+Models at Dynamic and Steady States.” https://arxiv.org/abs/2405.16524.
+
Lang, Paul F., David R. Penas, Julio R. Banga, Daniel Weindl, and Bela
Novak. 2024.
“Reusable Rule-Based Cell Cycle Model Explains
@@ -36,6 +42,19 @@ Compartment-Resolved Dynamics of 16 Observables in RPE-1 Cells.”
PLOS Computational Biology 20 (1): 1–24.
https://doi.org/10.1371/journal.pcbi.1011151.
+Merkt, Simon, Solomon Ali, Esayas Kebede Gudina, Wondimagegn Adissu,
+Addisu Gize, Maximilian Muenchhoff, Alexander Graf, et al. 2024.
+
“Long-Term Monitoring of SARS-CoV-2 Seroprevalence and Variants in
+Ethiopia Provides Prediction for Immunity and Cross-Immunity.”
+
Nature Communications 15 (1).
https://doi.org/10.1038/s41467-024-47556-2.
+
+Mutsuddy, Arnab. 2024.
“Single Cell Pharmacodynamic Modeling of
+Cancer Cell Lines.” PhD thesis, Clemson University.
https://tigerprints.clemson.edu/all_dissertations/3572.
+
Sluijs, Bob van, Tao Zhou, Britta Helwig, Mathieu G. Baltussen, Frank H.
T. Nelissen, Hans A. Heus, and Wilhelm T. S. Huck. 2024.
@@ -84,13 +103,6 @@ Rewiring Contribute to Drug Resistance.”
Molecular Systems
Biology 19 (2): e10988.
https://doi.org/10.15252/msb.202210988.
-Hasenauer, Jan, Simon Merkt, Solomon Ali, Esayas Gudina, Wondimagegn
-Adissu, Maximilian Münchhoff, Alexander Graf, et al. 2023.
-
“Long-Term Monitoring of SARS-CoV-2 Seroprevalence and Variants in
-Ethiopia Provides Prediction for Immunity and Cross-Immunity.” https://doi.org/10.21203/rs.3.rs-3307821/v1.
-
Huck, Wilhelm, Mathieu Baltussen, Thijs de Jong, Quentin Duez, and
William Robinson. 2023. “Chemical Reservoir Computation in a