Releases: AMICI-dev/AMICI
Releases · AMICI-dev/AMICI
AMICI v0.11.12
AMICI v0.11.11
Python
- Restore support for species references (#1358)
- Add support for noise models in pysb (#1360)
- Proper handling of discontinuities in the ODE rhs (#1352)
- Fix directly calling AMICI from snakemake (#1348 )
- Extend mathml function support, particularly for numerical arguments (#1357)
- Restore support for sympy 1.6 (#1356)
C++
- Fix some compiler related warnings (#1349, #1362 )
- Fix a rare segfault for adjoint sensitivities (#1351)
CI
- Move windows tests to GHA (#1354)
- Pin breathe to 4.24.1
Docker
- Update ubuntu to 20.04
AMICI v0.11.10
Bugfix release that restores compatibility with sympy 1.7
AMICI v0.11.9
Python
- General improvements to SBML import (#1312, #1316, #1315, #1322 , #1324 #1333, #1329)
- Small bugfixes and improvements (#1321 )
- Improve derivative computation for instances of
power
(#1320 )
C++
- Fix FIM and residual computation for models with parameter dependent sigma. (#1338)
- Disable chi2/residual/FIM computation for non-gaussian objective functions. (#1338)
- Bugfix for integration failure during adjoint solve (#1327)
Doc
CI
- Update OpenBLAS for windows (#1334)
AMICI v0.11.8
Python
- Fix pysb-petab support (#1288)
- Fix ExpData constructor overloading (#1299)
- Fix support for positivity enforcement (#1306)
- Refactor SBML import, adds support for parameter rate rules and initial assignments (#1284, #1296, #1304)
- Improve model generation for models with many parameters (#1300)
- Add support for PEtab based synthetic data generation (#1283)
C++
- Make HDF5 an optional dependency (#1285)
Doc
CI
AMICI v0.11.7
Python
- Improve and extend available objective functions (#1235)
- Fix processing of compartment definitions (#1223)
- Fix replacement of reserved symbols (#1265)
- Use Hierarchical Derivatives for Expressions (#1224, #1246)
- Fix duplicate running of swig (#1216)
- Overload python interface functions for amici.{Model,Solver,ExpData} and amici.{Model,Solver,ExpData}Ptr (#1271)
C++
- Fix and extend use of sparse matrix operations (#1230, #1240, #1244, #1247, #1271)
- Fix application of maximal number of steps, MaxNumStep parameter now limit total number of steps, not number of steps between output times. (#1267)
Doc
- Move all Documentation to RTD (#1229, #1241)
- General Improvements to Documentation (#1225, #1227, #1219, #1228, #1232, #1233, #1234, #1237, #1238, #1239, #1243, #1253, #1255, #1262)