test_playbook.yaml

name: Test Playbook

on:
  push:
    branches-ignore:
      - readthedocs
      - master
env:
  GALAXY_USER: tooladmin@galaxy.org
  GALAXY_USER_PASSWD: artbio2024
  BIOBLEND_GALAXY_URL: "http://127.0.0.1:80"
  BIOBLEND_TEST_JOB_TIMEOUT: "240"


jobs:

  Ubuntu_20-04:
    name: GalaxyXpand in ubuntu 20.04
    runs-on: ubuntu-20.04
    
    steps:
    - name: Remove PostgreSQL on VM
      run: |
        export RUNNER_ALLOW_RUNASROOT="1"
        sudo apt-get --purge remove postgresql
        dpkg -l | grep postgres
        sudo apt-get --purge remove pgdg-keyring postgresql*
        sudo rm -rf /var/lib/postgresql/  # directory data postgresql
        sudo rm -rf /var/log/postgresql/  # directory log postgresql
        sudo rm -rf /etc/postgresql/  # directory base postgresql
        sudo deluser postgres
        sudo apt-get -qq update -y

    - name: Remove ansible and Set up pip, ansible and bioblend in ubuntu 20.04
      run: |
        sudo apt -qq remove ansible
        sudo apt install python3-pip -y
        python3 -m pip install -U pip setuptools
        python3 -m pip install "packaging>=24" "ordered-set>=3.1.1" "more_itertools>=8.8" \
                                "jaraco.text>=3.7" "importlib_resources>=5.10.2" \
                                "importlib_metadata>=6" "tomli>=2.0.1" "wheel>=0.43.0" \
                                "platformdirs >= 2.6.2"


    - name: Install ansible 3.0 and bioblend in ubuntu 20.04
      run: |
        python3 -m pip install ansible==3.0.0
        python3 -m pip install --ignore-installed https://github.com/galaxyproject/bioblend/archive/refs/tags/v1.3.0.zip pytest
    
    - name: Display pip python and ansible settings
      run: |
        which python
        python --version
        which python3
        python3 --version
        ansible --version
        pip show pytest
        pip show bioblend
        pip3 --version || true
        which pytest
        which bioblend-galaxy-tests
        whoami

    - uses: actions/checkout@v3.2.0

    - name: Install ansible roles
      run: ansible-galaxy install -r requirements.yml -p roles/

    - name: ansible installs galaxy
      run: |
        sudo apt-get -qq update -y
        sudo apt-get -qq --purge remove nginx*
        ansible-playbook --extra-vars RUNNER_ALLOW_RUNASROOT="1" \
                         -e ansible_user="runner" \
                         -e allow_world_readable_tmpfiles="true" \
                         --skip-tags galaxy_build_client \
                         playbook.yml

    - name: Sleep for 60 secs and check galaxyctl status
      run: |
        sudo systemctl restart nginx.service
        sudo galaxyctl status
        sudo galaxyctl graceful
        echo "waiting 60 sec" && sleep 60
        sudo galaxyctl status

    - name: check Galaxy API is alive
      run: |
        curl http://127.0.0.1/api/version

    - name: ansible installs galaxy tools
      run: ansible-playbook --extra-vars RUNNER_ALLOW_RUNASROOT="1" -e ansible_user="runner" install_tools.yml
      
    - name: retrieve api key and reference it in glob env variable
      run: |
        BIOBLEND_GALAXY_API_KEY=`cat ./apikey.txt`
        echo "BIOBLEND_GALAXY_API_KEY=$BIOBLEND_GALAXY_API_KEY" >> $GITHUB_ENV

    - name: Bioblend tests
      run: |
        cd /home/runner/.local/lib/python3.8/site-packages/bioblend/_tests
        bioblend-galaxy-tests --color=yes -v TestGalaxyHistories.py TestGalaxyTools.py --no-summary || true
# -k "not test_other_users_histories"