diff --git a/.github/workflows/logging-mutants.yml b/.github/workflows/logging-mutants.yml
index ff0100ea31..9cd8f5c432 100644
--- a/.github/workflows/logging-mutants.yml
+++ b/.github/workflows/logging-mutants.yml
@@ -48,6 +48,12 @@ jobs:
       - name: Print old commit hash
         run: cat ./mutation-testing/packages-output/last_commit_hash.txt
 
+      - name: Create git.diff file
+        run: |
+          last_commit_hash=$(<../packages-output/last_commit_hash.txt)
+          git diff $last_commit_hash > git.diff
+        working-directory: ./mutation-testing/scripts
+
       - name: Remove deleted functions from output files
         run: ./remove-deleted-functions-from-output.sh
         working-directory: ./mutation-testing/scripts
@@ -58,10 +64,10 @@ jobs:
 
       - name: Run the mutation testing on the differences
         run: |
-          if [ -f ../packages-output/last_commit_hash.txt ]; then
-            ./git-diff.sh
+          if [ -f ./packages-output/last_commit_hash.txt ]; then
+            cargo mutants --no-shuffle -j 2 -vV --in-diff ./scripts/git.diff --output temp/
           fi
-        working-directory: ./mutation-testing/scripts
+        working-directory: ./mutation-testing
 
       - name: Update the content from the stable output
         run: bash append-match-package.sh
diff --git a/.github/workflows/tracking-pr-mutants.yml b/.github/workflows/tracking-pr-mutants.yml
index 2e54e8ed5d..0799ef27cd 100644
--- a/.github/workflows/tracking-pr-mutants.yml
+++ b/.github/workflows/tracking-pr-mutants.yml
@@ -21,6 +21,7 @@ jobs:
           run: |
             git branch -av
             git diff origin/${{ github.base_ref }}.. | tee git.diff
+          working-directory: ./mutation-testing/scripts
 
         - uses: Swatinem/rust-cache@v2
 
@@ -33,6 +34,7 @@ jobs:
         - name: Mutants
           run: |
             cargo mutants --no-shuffle -j 2 -vV --in-diff git.diff || true
+          working-directory: ./mutation-testing/scripts
 
         - name: Check if we have missed/timeout mutants, and if so, fail the workflow
           run: |
diff --git a/mutation-testing/scripts/git-diff.sh b/mutation-testing/scripts/git-diff.sh
deleted file mode 100755
index a54abe69ed..0000000000
--- a/mutation-testing/scripts/git-diff.sh
+++ /dev/null
@@ -1,27 +0,0 @@
-# script that makes .git for the differences
-# it saves the .git on scripts folder
-
-# add untracked files to git diff
-# go to root folder
-cd ./../..
-
-# # run git status on root
-# untracked_files=($(git ls-files --others --exclude-standard))
-
-# # for each file untracked -> run git add file path
-# echo "${untracked_files[@]}"
-# for file in "${untracked_files[@]}"; do
-#   git add -N "$file"
-# done
-
-# run from mutation-testing folder
-cd mutation-testing
-
-
-# get the differences since the last commit
-last_commit_hash=$(<./packages-output/last_commit_hash.txt)
-git diff $last_commit_hash > ./scripts/git.diff
-
-# it runs cargo mutants for those specific changed functions and outputs to /temp/mutants.out
-# for faster builds: increase number to 4 if at least 16 gb ram and 6 cores CPU
-cargo mutants --no-shuffle -j 2 -vV --in-diff ./scripts/git.diff --output temp/