From 4760537e1bb19a34fdeefb4293d310a9d59973f8 Mon Sep 17 00:00:00 2001 From: Fletcher Chapin Date: Wed, 8 Feb 2023 09:11:17 -0800 Subject: [PATCH] hotfix: import error (#324) * Fixed import error * All tests passing! * Hopefully I fixed the CI errors * hopefully fixed docs error * More updates to reqs * maybe this wil do it? * Fixing build.yml * Fixing broken links * Missed one http link * trying something else to fix build error * Fixing duplicate runs of build workflow * Trying to fix codecov error * Fixing syntax --- .github/workflows/build.yml | 12 +- Pipfile | 3 +- Pipfile.lock | 2136 ++++++++++++++-------- aguaclara/core/cache.py | 2 +- aguaclara/core/constants.py | 4 +- aguaclara/core/data/unit_definitions.txt | 10 - aguaclara/core/pipes.py | 2 +- aguaclara/core/units.py | 5 +- aguaclara/design/floc.py | 6 +- aguaclara/research/peristaltic_pump.py | 2 +- docs/source/conf.py | 2 +- docs/source/index.rst | 2 +- setup.py | 3 +- 13 files changed, 1424 insertions(+), 765 deletions(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 9a1859b2..f276c29e 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -1,6 +1,10 @@ name: Build -on: [push, pull_request] +on: + pull_request: + push: + branches: + - main jobs: test-python: @@ -24,14 +28,14 @@ jobs: run: | python -m pip install --upgrade pip pip install pipenv - pipenv install --dev + pipenv install --dev --python ${{ matrix.python-version }} - name: Run pytests and generate coverage report run: | pipenv run pytest --cov=./ --cov-report=xml - name: Upload coverage to Codecov - uses: codecov/codecov-action@v1 + uses: codecov/codecov-action@v3 with: fail_ci_if_error: true @@ -62,4 +66,4 @@ jobs: uses: chabad360/htmlproofer@master with: directory: docs/build/html - arguments: --allow_hash_href --file_ignore "docs/build/html/search.html" \ No newline at end of file + arguments: --allow_hash_href --ignore-files "docs/build/html/search.html" \ No newline at end of file diff --git a/Pipfile b/Pipfile index 3b33d32a..a68358da 100644 --- a/Pipfile +++ b/Pipfile @@ -11,6 +11,7 @@ pint = "*" pandas = "*" scipy = "*" onshape_client = "*" +numpy = "==1.22.1" [dev-packages] aguaclara = {editable = true, path = "."} @@ -18,7 +19,7 @@ autopep8 = "*" codecov = "*" coverage = "*" pylint = "*" -pytest = "*" +pytest = "==7.2.1" pytest-cov = "*" pytest-runner = "*" atomicwrites = {version = ">=1.0", sys.platform = "win32"} # pytest dependency diff --git a/Pipfile.lock b/Pipfile.lock index 18bbb705..44527a74 100644 --- a/Pipfile.lock +++ b/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "d372c9d24e40e0d79418d2a0702300136614ad92bc4cef3a85d4c5cf35261870" + "sha256": "b076cf8bebba1794fe7305cdc1306f1c52afecf1e4d6ae0b3e22eedd32c4a167" }, "pipfile-spec": 6, "requires": {}, @@ -16,102 +16,310 @@ "default": { "certifi": { "hashes": [ - "sha256:1a4995114262bffbc2413b159f2a1a480c969de6e6eb13ee966d470af86af59c", - 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], + "markers": "python_version < '3.11'", + "version": "==1.14.1" } } } diff --git a/aguaclara/core/cache.py b/aguaclara/core/cache.py index 28ade853..8e98c642 100644 --- a/aguaclara/core/cache.py +++ b/aguaclara/core/cache.py @@ -28,7 +28,7 @@ def ac_hash(hashable_object): a_hash = repr(hashable_object) elif isinstance(hashable_object, HashableObject): a_hash = hashable_object.ac_hash() - elif isinstance(hashable_object, collections.Iterable): + elif isinstance(hashable_object, collections.abc.Iterable): a_hash = ac_hash_iterable_into_tuple(hashable_object) else: a_hash = repr(hashable_object) diff --git a/aguaclara/core/constants.py b/aguaclara/core/constants.py index c37760fe..581ab7e8 100644 --- a/aguaclara/core/constants.py +++ b/aguaclara/core/constants.py @@ -34,7 +34,7 @@ #: The ratio of maximum energy dissipation rate in a round jet to the kinetic #: energy per time required for the jet to travel a distance equal to its #: diameter. See `round jet -#: `_ +#: `_ #: in the AguaClara textbook for more details. JET_ROUND_RATIO = 0.08 @@ -42,7 +42,7 @@ #: energy per time required for the jet to travel a distance equal to its #: diameter. This ratio applies to jets in the flocculator and sedimentation #: tank. See `plane jet -#: `_ +#: `_ #: in the AguaClara textbook for more details. JET_PLANE_RATIO = 0.0124 diff --git a/aguaclara/core/data/unit_definitions.txt b/aguaclara/core/data/unit_definitions.txt index 6b2bfd90..f4e76f97 100644 --- a/aguaclara/core/data/unit_definitions.txt +++ b/aguaclara/core/data/unit_definitions.txt @@ -1,13 +1,3 @@ -""" -Created on Fri June 23 2017 - -Author: Sage Weber-Shirk - -Last modified: Mon Jun 26 2017 -By: Sage Weber-Shirk - -""" - NTU = 1.47 * (mg / L) dollar = [money] = USD lempira = dollar * 0.0427 = HNL diff --git a/aguaclara/core/pipes.py b/aguaclara/core/pipes.py index 8eff9e70..4231c402 100644 --- a/aguaclara/core/pipes.py +++ b/aguaclara/core/pipes.py @@ -3,7 +3,7 @@ Note: added to pipe database for schedule 80, 120 and 160 using -https://www.engineersedge.com/pipe_schedules.htm#Related +https://www.engineersedge.com/pipe_schedules.htm """ from aguaclara.core.units import u diff --git a/aguaclara/core/units.py b/aguaclara/core/units.py index f442fc60..9fe0175c 100644 --- a/aguaclara/core/units.py +++ b/aguaclara/core/units.py @@ -165,8 +165,9 @@ u.default_format = '.4g' pd.options.display.float_format = '{:,.4g}'.format -u.load_definitions(os.path.join(os.path.dirname(__file__), - "data", "unit_definitions.txt")) +u.load_definitions( + os.path.join(os.path.dirname(__file__), "data", "unit_definitions.txt") +) def set_sig_figs(n=4): diff --git a/aguaclara/design/floc.py b/aguaclara/design/floc.py index f23f6abb..14981a03 100644 --- a/aguaclara/design/floc.py +++ b/aguaclara/design/floc.py @@ -153,11 +153,11 @@ def chan_n(self): ) + self.ent_l ) / self.chan_l).to_base_units() - if self.chan_n_parity is 'even': + if self.chan_n_parity == 'even': return ut.ceil_step(chan_n, step=2) - elif self.chan_n_parity is 'odd': + elif self.chan_n_parity == 'odd': return ut.ceil_step(chan_n, step=2) - 1 - elif self.chan_n_parity is 'any': + elif self.chan_n_parity == 'any': return ut.ceil_step(chan_n, step=1) @property diff --git a/aguaclara/research/peristaltic_pump.py b/aguaclara/research/peristaltic_pump.py index f8bcdb8e..7b272b3e 100644 --- a/aguaclara/research/peristaltic_pump.py +++ b/aguaclara/research/peristaltic_pump.py @@ -17,7 +17,7 @@ def vol_per_rev_3_stop(color="", inner_diameter=0): """Return the volume per revolution of an Ismatec 6 roller pump given the inner diameter (ID) of 3-stop tubing. The calculation is interpolated from the table found at - http://www.ismatec.com/int_e/pumps/t_mini_s_ms_ca/tubing_msca2.htm. + https://web.archive.org/web/20211027155239/http://www.ismatec.com/int_e/pumps/t_mini_s_ms_ca/tubing_msca2.htm. Note: 1. Either input a string as the tubing color code or a number as the diff --git a/docs/source/conf.py b/docs/source/conf.py index 4f8dbbef..0a743836 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -172,4 +172,4 @@ todo_include_todos = True def setup(app): - app.add_stylesheet("css/youtube.css") + app.add_css_file("css/youtube.css") diff --git a/docs/source/index.rst b/docs/source/index.rst index bc5cf10d..18e297fc 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -10,7 +10,7 @@ Welcome to the AguaClara Package Documentation! .. |ACR| image:: images/acr_logo.png :width: 250 px -``aguaclara`` is a Python package developed by `AguaClara Cornell `_ and `AguaClara Reach `_ for designing and performing research on AguaClara water treatment plants. The package has several main functionalities: +``aguaclara`` is a Python package developed by `AguaClara Cornell `_ and `AguaClara Reach `_ for designing and performing research on AguaClara water treatment plants. The package has several main functionalities: * **DESIGN** of AguaClara water treatment plant components * **MODELING** of physical, chemical, and hydraulic processes in water treatment diff --git a/setup.py b/setup.py index f5aeb55a..8e9aef13 100644 --- a/setup.py +++ b/setup.py @@ -33,11 +33,12 @@ 'pandas', 'scipy', 'onshape_client', + 'numpy==1.22.1' ], python_requires='>=3.8', setup_requires=["pytest-runner"], - tests_require=["pytest"], + tests_require=["pytest==7.2.1"], include_package_data=True, test_suite="tests", zip_safe=False