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Many required dependencies not specified #60

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pgarrison opened this issue Mar 29, 2024 · 0 comments

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pgarrison commented Mar 29, 2024

The following dependencies are used but not declared in setup.py.

numpy
pandas
matplotlib
vtk
tqdm
skimage
sklearn
scipy
aicsimageio
aicsshparam
aicscytoparam
quilt3
datastep (still used in cvapipe_analysis/steps/validation/validation.py, cvapipe_analysis/steps/cellpack/cellpack.py)
joblib

This will cause problems for anyone who wants to pip install cvapipe_analysis and use a module with a missing dependency.

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