Error running run_training_synapse.sh

[Andrew2784]

Hello everyone. I am having trouble running the run_training_synapse.sh bash script. It starts to run for a few seconds until it encounters the following error:

FileNotFoundError: [Errno 2] No such file or directory: '../output_synapse\unetr_pp\3d_fullres\Task002_Synapse\unetr_pp_trainer_synapse__unetr_pp_Plansv2.1\fold_0\training_log_2024_11_13_17_16_06.txt'

I am pretty sure that I am running the bash script in the appropriate location, but I'm still not sure why this error keeps occurring. Any help would be appreciated. Thank you.

[ASCI02]

Hello, I hope you're still there. The reason for this issue is that the maybe_mkdir_p function in the code is not compatible with the Windows system. You can modify the maybe_mkdir_p function to:

def maybe_mkdir_p(directory):
    directory = os.path.abspath(directory)
    if not os.path.exists(directory):
        try:
            os.makedirs(directory)
        except FileExistsError:
            # This can sometimes happen when two jobs try to create the same directory at the same time,
            # especially on network drives.
            print("WARNING: Folder %s already existed and does not need to be created" % directory)

I hope this can help you.