BlockC_module3_load-weather-data.nlogo

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; GNU GENERAL PUBLIC LICENSE ;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

;;  Module for calculation of ARID using GIS and weather data
;;  Based on modified parts of:
;;  Soil Water Balance model (NetLogo implementation)
;;  Land model
;;  Copyright (C) 2019 Andreas Angourakis (andros.spica@gmail.com)
;;  available at https://www.github.com/Andros-Spica/indus-village-model
;;  implementing the Soil Water Balance model from Wallach et al. 2006 'Working with dynamic crop models' (p. 24-28 and p. 138-144).
;;  This implementation uses parts of the Weather model to simulate input variables (i.e., temperature, solar radiation, precipitation, evapotranspiration)
;;
;;  This program is free software: you can redistribute it and/or modify
;;  it under the terms of the GNU General Public License as published by
;;  the Free Software Foundation, either version 3 of the License, or
;;  (at your option) any later version.
;;
;;  This program is distributed in the hope that it will be useful,
;;  but WITHOUT ANY WARRANTY; without even the implied warranty of
;;  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;  GNU General Public License for more details.
;;
;;  You should have received a copy of the GNU General Public License
;;  along with this program.  If not, see <http://www.gnu.org/licenses/>.

extensions [ csv ]

;;;;;;;;;;;;;;;;;
;;;;; BREEDS ;;;;
;;;;;;;;;;;;;;;;;

breed [ flowHolders flowHolder ]

;;;;;;;;;;;;;;;;;
;;; VARIABLES ;;;
;;;;;;;;;;;;;;;;;

globals
[
  ;;; weather input data
  weatherInputData_firstYear
  weatherInputData_lastYear
  weatherInputData_YEARS
  weatherInputData_yearLengthInDays
  weatherInputData_DOY
  weatherInputData_YEAR-DOY
  weatherInputData_solarRadiation
  weatherInputData_precipitation
  weatherInputData_temperature
  weatherInputData_maxTemperature
  weatherInputData_minTemperature

  ;;;; Solar radiation (MJ/m2)
  solar_annualMax
  solar_annualMin
  solar_meanDailyFluctuation

  ;;; variables
  ;;;; time tracking
  currentYear
  currentDayOfYear

  ;;;; main (these follow a seasonal pattern and apply for all patches)

  T ; average temperature of current day (ºC)
  T_max ; maximum temperature of current day (ºC)
  T_min ; minimum temperature of current day (ºC)

  solarRadiation ; solar radiation of current day (MJ m-2)

  RAIN ; precipitation of current day (mm)
  precipitation_yearSeries
  precipitation_cumYearSeries
]

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; SETUP ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

to setup

  clear-all

  ; --- core procedures ----------------------

  load-weather-input-data-table

  set currentYear weatherInputData_firstYear
  set currentDayOfYear 1

  ;;; values are taken from input data
  set-day-weather-from-input-data currentDayOfYear currentYear

  ; -- time -------------------------------------

  reset-ticks

end

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; GO ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

to go

  advance-time

  ;;; values are taken from input data
  set-day-weather-from-input-data currentDayOfYear currentYear

  tick

  ; --- stop conditions -------------------------

  if (currentYear = weatherInputData_lastYear and currentDayOfYear = last weatherInputData_yearLengthInDays) [stop]

end

;;; GLOBAL ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

to advance-time

  set currentDayOfYear currentDayOfYear + 1

  if (currentDayOfYear > item (currentYear - weatherInputData_firstYear) weatherInputData_yearLengthInDays)
  [
    set currentYear currentYear + 1
    set currentDayOfYear 1
  ]

end

to set-day-weather-from-input-data [ dayOfYear year ]

  ;;; find corresponding index to year-dayOfYear pair

  let yearAndDoyIndex position (word year "-" dayOfYear) weatherInputData_YEAR-DOY

  ;;; get values from weather input data

  set solarRadiation item yearAndDoyIndex weatherInputData_solarRadiation

  set T item yearAndDoyIndex weatherInputData_temperature

  set T_min item yearAndDoyIndex weatherInputData_minTemperature

  set T_max item yearAndDoyIndex weatherInputData_maxTemperature

  set RAIN item yearAndDoyIndex weatherInputData_precipitation

  if (dayOfYear = 1)
  [
    ;;; fill values of precipitation_yearSeries and precipitation_cumYearSeries, used here only for visualisation

    let yearLengthInDays item (currentYear - weatherInputData_firstYear) weatherInputData_yearLengthInDays
    let yearAndLastDoyIndex position (word year "-" yearLengthInDays) weatherInputData_YEAR-DOY

    set precipitation_yearSeries sublist weatherInputData_precipitation yearAndDoyIndex (yearAndLastDoyIndex + 1)

    let yearTotal sum precipitation_yearSeries
    set precipitation_cumYearSeries (list)
    let cumulativeSum 0
    foreach precipitation_yearSeries
    [
      i ->
      set cumulativeSum cumulativeSum + i
      set precipitation_cumYearSeries lput cumulativeSum precipitation_cumYearSeries
    ]
    set precipitation_cumYearSeries map [i -> i / yearTotal] precipitation_cumYearSeries
  ]

end

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; DISPLAY ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

to plot-precipitation-table

  clear-plot

  let yearLengthInDays item (currentYear - weatherInputData_firstYear) weatherInputData_yearLengthInDays

  set-plot-x-range 0 (yearLengthInDays + 1)

  ;;; precipitation (mm/day) is summed by month
  foreach n-values yearLengthInDays [j -> j]
  [
    dayOfYearIndex ->
    plotxy (dayOfYearIndex + 1) (item dayOfYearIndex precipitation_yearSeries)
  ]
  plot-pen-up

end

to plot-cumPrecipitation-table

  clear-plot

  let yearLengthInDays item (currentYear - weatherInputData_firstYear) weatherInputData_yearLengthInDays

  set-plot-y-range -0.1 1.1
  set-plot-x-range 0 (yearLengthInDays + 1)

  ;;; precipitation (mm/day) is summed by month
  foreach n-values yearLengthInDays [j -> j]
  [
    dayOfYearIndex ->
    plotxy (dayOfYearIndex + 1) (item dayOfYearIndex precipitation_cumYearSeries)
  ]
  plot-pen-up

end

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; LOAD DATA FROM TABLES ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

to load-weather-input-data-table

  ;;; this procedure loads the values of the weather data input table
  ;;; the table contains:
  ;;;   1. 13 lines of metadata, to be ignored
  ;;;   2. one line with the headers of the table
  ;;;   3. remaining rows containing row name and values

  let weatherTable csv:from-file "data/POWER_Point_Daily_19840101_20201231_035d0309N_024d8335E_LST.csv"

  ;;;==================================================================================================================
  ;;; mapping coordinates (row or columns) from headings (line 14 == index 13 -----------------------------------------
  ;;; NOTE: always correct raw mapping coordinates (start at 1) into list indexes (start at 0)
  let variableNames item (14 - 1) weatherTable

  let yearColumn position "YEAR" variableNames

  let solarRadiationColumn position "ALLSKY_SFC_SW_DWN" variableNames

  let precipitationColumn position "PRECTOTCORR" variableNames

  let temperatureColumn position "T2M" variableNames

  let temperatureMaxColumn position "T2M_MAX" variableNames

  let temperatureMinColumn position "T2M_MIN" variableNames

  ;;;==================================================================================================================
  ;;; extract data---------------------------------------------------------------------------------------

  ;;; read variables per year and day (list of lists, matrix: year-day x variables)
  let weatherData sublist weatherTable (15 - 1) (length weatherTable) ; select only those row corresponding to variable data, if there is anything else

  ;;; extract year-day of year pairs from the third and fourth columns
  set weatherInputData_YEARS map [row -> item yearColumn row ] weatherData

  ;;; NASA-POWER data uses year, month, day of month, instead of day of year,
  ;;; so we need to calculate day of year of each row ourselves
  set weatherInputData_DOY []
  set weatherInputData_yearLengthInDays []
  foreach (remove-duplicates weatherInputData_YEARS)
  [
    aYear ->
    let aDoy 1
    let lengthOfThisYear length (filter [i -> i = aYear] weatherInputData_YEARS)
    set weatherInputData_yearLengthInDays lput lengthOfThisYear weatherInputData_yearLengthInDays
    repeat lengthOfThisYear
    [
      set weatherInputData_DOY lput aDoy weatherInputData_DOY
      set aDoy aDoy + 1
    ]
  ]
  set weatherInputData_YEAR-DOY (map [[i j] -> (word i "-" j)] weatherInputData_YEARS weatherInputData_DOY)

  ;;; extract first and last year
  set weatherInputData_firstYear first weatherInputData_YEARS

  set weatherInputData_lastYear last weatherInputData_YEARS

  ;;; extract parameter values from the given column
  ;;; NOTE: read-from-string is required because the original file is formated in a way that NetLogo interprets values as strings.

  set weatherInputData_solarRadiation map [row -> item solarRadiationColumn row ] weatherData

  set weatherInputData_precipitation map [row -> item precipitationColumn row ] weatherData

  set weatherInputData_temperature map [row -> item temperatureColumn row ] weatherData

  set weatherInputData_maxTemperature map [row -> item temperatureMaxColumn row ] weatherData

  set weatherInputData_minTemperature map [row -> item temperatureMinColumn row ] weatherData

end
@#$#@#$#@
GRAPHICS-WINDOW
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-1
-1
1.2
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10
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ticks
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BUTTON
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setup
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OBSERVER
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BUTTON
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go
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OBSERVER
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go
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OBSERVER
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PLOT
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1007
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Temperature
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ºC
0.0
10.0
0.0
10.0
true
true
"" ""
PENS
"mean" 1.0 0 -16777216 true "" "plot T"
"min" 1.0 0 -13345367 true "" "plot T_min"
"max" 1.0 0 -2674135 true "" "plot T_max"

PLOT
373
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965
339
Solar radiation
days
MJ/m2
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10.0
0.0
10.0
true
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"" ""
PENS
"default" 1.0 0 -16777216 true "" "plot solarRadiation"

MONITOR
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currentYear
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MONITOR
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currentDayOfYear
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BUTTON
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+ year
let yearLengthInDays item (currentYear - weatherInputData_firstYear) weatherInputData_yearLengthInDays\nrepeat yearLengthInDays [ go ]
NIL
1
T
OBSERVER
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NIL
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1

PLOT
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precipitation
days
ppm
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true
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"" ""
PENS
"RAIN" 1.0 1 -16777216 true "" "plot RAIN"

PLOT
637
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894
630
cumulative year precipitation
NIL
NIL
0.0
10.0
0.0
10.0
true
false
"set-plot-y-range -0.1 1.1\nlet yearLengthInDays item (currentYear - weatherInputData_firstYear) weatherInputData_yearLengthInDays\nset-plot-x-range 0 (yearLengthInDays + 1)" ""
PENS
"default" 1.0 0 -16777216 true "" "if (currentDayOfYear = 1) [ plot-cumPrecipitation-table ]"

PLOT
421
510
619
630
year preciptation
NIL
NIL
0.0
10.0
0.0
10.0
true
false
"let yearLengthInDays item (currentYear - weatherInputData_firstYear) weatherInputData_yearLengthInDays\nset-plot-x-range 0 (yearLengthInDays + 1)" ""
PENS
"default" 1.0 1 -16777216 true "" "if (currentDayOfYear = 1) [ plot-precipitation-table ]"

MONITOR
913
545
986
590
year total
sum precipitation_yearSeries
2
1
11

@#$#@#$#@
## WHAT IS IT?

(a general understanding of what the model is trying to show or explain)

## HOW IT WORKS

(what rules the agents use to create the overall behavior of the model)

## HOW TO USE IT

(how to use the model, including a description of each of the items in the Interface tab)

## THINGS TO NOTICE

(suggested things for the user to notice while running the model)

## THINGS TO TRY

(suggested things for the user to try to do (move sliders, switches, etc.) with the model)

## EXTENDING THE MODEL

(suggested things to add or change in the Code tab to make the model more complicated, detailed, accurate, etc.)

## NETLOGO FEATURES

(interesting or unusual features of NetLogo that the model uses, particularly in the Code tab; or where workarounds were needed for missing features)

## RELATED MODELS

(models in the NetLogo Models Library and elsewhere which are of related interest)

## CREDITS AND REFERENCES

(a reference to the model's URL on the web if it has one, as well as any other necessary credits, citations, and links)
@#$#@#$#@
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@#$#@#$#@
NetLogo 6.2.2
@#$#@#$#@
@#$#@#$#@
@#$#@#$#@
<experiments>
  <experiment name="experiment" repetitions="1" runMetricsEveryStep="true">
    <setup>setup</setup>
    <go>go</go>
    <timeLimit steps="2190"/>
    <metric>T</metric>
    <metric>T_max</metric>
    <metric>T_min</metric>
    <metric>RAIN</metric>
    <metric>solarRadiation</metric>
    <metric>ETr</metric>
    <metric>mean [WATp] of patches</metric>
    <metric>mean [ARID] of patches</metric>
    <metric>mean [biomass] of patches with [position crop typesOfCrops = 0]</metric>
    <metric>mean [biomass] of patches with [position crop typesOfCrops = 1]</metric>
    <metric>mean [yield] of patches with [position crop typesOfCrops = 0]</metric>
    <metric>mean [yield] of patches with [position crop typesOfCrops = 1]</metric>
    <enumeratedValueSet variable="precipitation_daily-cum_rate2_yearly-mean">
      <value value="0.05"/>
    </enumeratedValueSet>
    <enumeratedValueSet variable="CO2-mean">
      <value value="250"/>
    </enumeratedValueSet>
    <enumeratedValueSet variable="solar_annual-min">
      <value value="3"/>
    </enumeratedValueSet>
    <enumeratedValueSet variable="precipitation_daily-cum_rate2_yearly-sd">
      <value value="0.01"/>
    </enumeratedValueSet>
    <enumeratedValueSet variable="CO2-daily-fluctuation">
      <value value="1"/>
    </enumeratedValueSet>
    <enumeratedValueSet variable="seed">
      <value value="0"/>
    </enumeratedValueSet>
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