Cant import the library: No module named 'pubtator_loader.models'

[deakkon]

Hi,

while trying to use your library, I failed at the first step: importing it. Not sure what I am doing wrong; can you sport what I could be doing wrong?

Find the traceback below.

...: from pubtator_loader.pubtator_corpus_reader import PubTatorCorpusReader

ModuleNotFoundError Traceback (most recent call last)
in
----> 1 from pubtator_loader.pubtator_corpus_reader import PubTatorCorpusReader

~/anaconda3/envs/know-nlp-tf2/lib/python3.6/site-packages/pubtator_loader-0.1.1-py3.6.egg/pubtator_loader/init.py in
----> 1 from .models import PubTatorEntity, PubTatorDocument # noqa

ModuleNotFoundError: No module named 'pubtator_loader.models'

[deakkon]

For some reason, the installed package doesn't contain the models package/directory. I tried it both with pip and installing from source.

I copied the models folder from the source code to the virt env and it works well.

Hope it helps.

[ArshSekhon]

Hi @deakkon

Thanks for pointing out the issues. They should be fixed in the Release 0.1.4. Can you please try re-installing the newer version (Release 0.1.4) of pubtator_loader using pip install pubtator_loader==0.1.4 and see if it works now?

Cheers,
Arsh

[deakkon]

Any particular reason spacy is limited to the 3.0.5 version?

We use 2.1.3 for various reasons, the main being updating spacy would break things at this point in time.