Sample
Collection/Research Resource
- Age Unit
- Collection Design
- Component Status
- Dataset Type
- Inclusion Criteria
- Sample Collection Setting
- Sample Source
- Sex
- Storage Temperature
- Use & Access Condition
Biobank
- Bioprocessing and Analytical Capabilities
- Infrastructural Capabilities
- Organisational Capabilities
- Quality Management Standard
Network
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Years | MIABIS-COLLECTION-11, MIABIS-COLLECTION-12, MIABIS-RESEARCHRESOURCE-09, MIABIS-RESEARCHRESOURCE-10 | ||
| Months | MIABIS-COLLECTION-11, MIABIS-COLLECTION-12, MIABIS-RESEARCHRESOURCE-09, MIABIS-RESEARCHRESOURCE-10 | ||
| Weeks | MIABIS-COLLECTION-11, MIABIS-COLLECTION-12, MIABIS-RESEARCHRESOURCE-09, MIABIS-RESEARCHRESOURCE-10 | ||
| Days | MIABIS-COLLECTION-11, MIABIS-COLLECTION-12, MIABIS-RESEARCHRESOURCE-09, MIABIS-RESEARCHRESOURCE-10 | ||
| Gestational weeks | MIABIS-COLLECTION-11, MIABIS-COLLECTION-12, MIABIS-RESEARCHRESOURCE-09, MIABIS-RESEARCHRESOURCE-10 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Biochemical analyses | The biobank can offer to clients the following bioprocessing/analytical service: Biochemical analyses | MIABIS-BIOBANK-11 | |
| Genomics | The biobank can offer to clients the following bioprocessing/analytical service: Genomics | MIABIS-BIOBANK-11 | |
| Nucleic acid extraction | The biobank can offer to clients the following bioprocessing/analytical service: Nucleic acid extraction | MIABIS-BIOBANK-11 | |
| Proteomics | The biobank can offer to clients the following bioprocessing/analytical service: Proteomics | MIABIS-BIOBANK-11 | |
| Metabolomics | The biobank can offer to clients the following bioprocessing/analytical service: Metabolomics | MIABIS-BIOBANK-11 | |
| Histology | The biobank can offer to clients the following bioprocessing/analytical service: Histology | MIABIS-BIOBANK-11 | |
| Cell-lines processing | The biobank can offer to clients the following bioprocessing/analytical service: Cell-lines processing | MIABIS-BIOBANK-11 | |
| Virology | The biobank can offer to clients the following bioprocessing/analytical service: Virology | MIABIS-BIOBANK-11 | |
| Sample processing | The biobank can offer to clients the following bioprocessing/analytical service: Sample processing | MIABIS-BIOBANK-11 | |
| Sample shipping | The biobank can offer to clients the following bioprocessing/analytical service: Sample shipping | MIABIS-BIOBANK-11 | |
| Sample quality control services | The biobank can offer to clients the following bioprocessing/analytical service: Sample quality control services | MIABIS-BIOBANK-11 | |
| Other | The biobank can offer to clients the following bioprocessing/analytical service: Other services | MIABIS-BIOBANK-11 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Case-control | A case-control study design compares two groups of subjects: those with the disease or condition under study (cases) and a very similar group of subjects who do not have the disease or condition (controls). | EMBL (EFO) | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 |
| Cross-sectional | A type of observational study that involves data collection from a population, or a representative subset, at one specific point in time. | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 | |
| Longitudinal cohort | Research studies involving repeated observations of the same entity over time. In the biobank context, longitudinal studies sample a group of people in a given time period, and study them at intervals by the acquisition and analyses of data and/or samples over time. | P3G | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 |
| Twin-study | Twin studies measure the contribution of genetics (as opposed to environment) to a given trait or condition of interest. | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 | |
| Quality control study | A quality control testing study design type is where some aspect of the experiment is quality controlled for the purposes of quality assurance. | EMBL (EFO) | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 |
| Population-based cohort | Study done at the population level or among the population groups, generally to find the cause, incidence or spread of the disease or to see the response to the treatment, nutrition or environment. | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 | |
| Disease specific cohort | A study or biobank for which material and information is collected from subjects that have already developed a particular disease. | EMBL (EFO) | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 |
| Birth cohort | A corhort study for which the subjects are followed from the time of birth usually including information about gestation and follow up. | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 | |
| Microbial collection (if applicable with resistance data) | An entity consisting of biological material and/or data relevant for microbiological research. | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 | |
| Reference collection | An entity consisting of biological material and/or data relevant for microbiological research. | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 | |
| Rare disease collection | An entity consisting of biological material and/or data relevant for microbiological research. | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 | |
| Other | An entity consisting of biological material and/or data relevant for microbiological research. | MIABIS-COLLECTION-18, MIABIS-RESEARCHRESOURCE-18 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Common charter | Network partners have a common charter | MIABIS-NETWORK-11 | |
| Common SOPs | Network partners have common Standard Operating Procedures (SOPs) | MIABIS-NETWORK-11 | |
| Common data access policy | Network partners have a common data access policy | MIABIS-NETWORK-11 | |
| Common sample access policy | Network partners have a common sample access policy | MIABIS-NETWORK-11 | |
| Common MTA | Network partners have a common Material Transfer Agreement (MTA) | MIABIS-NETWORK-11 | |
| Common image access policy | Network partners have a common image access policy | MIABIS-NETWORK-11 | |
| Common image MTA | Network partners have a common image MTA | MIABIS-NETWORK-11 | |
| Common representation | Network partners have a common representation | MIABIS-NETWORK-11 | |
| Common URL | Network partners have a common URL | MIABIS-NETWORK-11 | |
| Other | Network partners have other collaboration topic/s. | MIABIS-NETWORK-11 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Active | The [Collection, Research resource, Network]'s functions are active | MIABIS-COLLECTION-20, MIABIS-NETWORK-09 | |
| Ended | The [Collection, Research resource, Network]'s functions have ended | MIABIS-COLLECTION-20, MIABIS-NETWORK-09 | |
| Other | The status of the [Collection, Research resource, Network]'s functions is other than active/ended | MIABIS-COLLECTION-20, MIABIS-NETWORK-09 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Lifestyle dataset | Type of datasets obtained or otherwise derived from donors or their specimens: Lifestyle dataset | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Environmental dataset | Type of datasets obtained or otherwise derived from donors or their specimens: Environmental dataset | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Physiological dataset | Type of datasets obtained or otherwise derived from donors or their specimens: Physiological dataset | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Biochemical dataset | Type of datasets obtained or otherwise derived from donors or their specimens: Biochemical dataset | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Clinical dataset | Type of datasets obtained or otherwise derived from donors or their specimens: Clinical dataset | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Psychological dataset | Type of datasets obtained or otherwise derived from donors or their specimens: Psychological dataset | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Genomic dataset | Type of datasets obtained or otherwise derived from donors or their specimens: Genomic dataset | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Proteomic dataset | Type of datasets obtained or otherwise derived from donors or their specimens: Proteomic dataset | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Metabolomic dataset | Type of datasets obtained or otherwise derived from donors or their specimens: Metabolomic dataset | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Body (Radiological) image | Type of datasets obtained or otherwise derived from donors or their specimens: Body (Radiological) image | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Whole slide image | Type of datasets obtained or otherwise derived from donors or their specimens: Whole slide image | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Photo image | Type of datasets obtained or otherwise derived from donors or their specimens: Photo image | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Genealogical records | Type of datasets obtained or otherwise derived from donors or their specimens: Genealogical records | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 | |
| Other | Type of datasets obtained or otherwise derived from donors or their specimens: Other | MIABIS-COLLECTION-13, MIABIS-RESEARCHRESOURCE-13 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Health status | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Hospital patient | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Use of medication | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Gravidity | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Age group | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Familial status | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Sex | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Country of residence | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Ethnic origin | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Population representative sampling | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Lifestyle/Exposure | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 | ||
| Other | MIABIS-COLLECTION-22, MIABIS-RESEARCHRESOURCE-22 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Sample storage | The biobank can offer clients sample storage services. | MIABIS-BIOBANK-09 | |
| Data storage | The biobank can offer clients data storage services. | MIABIS-BIOBANK-09 | |
| Biosafety abilities | The biobank has biosafety abilities to offer to clients. | MIABIS-BIOBANK-09 | |
| Other | The biobank has other abilities to offer to clients. | MIABIS-BIOBANK-09 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| BBMRI-ERIC National Node network | BBMRI-ERIC National Node network | MIABIS-NETWORK-12 | |
| Biobank network | Biobank network | MIABIS-NETWORK-12 | |
| Collection network | Collection network | MIABIS-NETWORK-12 | |
| Disease-specific network | Disease-specific network | MIABIS-NETWORK-12 | |
| Project network | Project network | MIABIS-NETWORK-12 | |
| Rare Disease network | Rare Disease network | MIABIS-NETWORK-12 | |
| Other | Other type of network/collaboration | MIABIS-NETWORK-12 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Recontact with donors | The biobank can provide the following service to support clients: Recontact with donors | MIABIS-BIOBANK-10 | |
| Facilitating clinical trials | The biobank can provide the following service to support clients: Facilitating clinical trials | MIABIS-BIOBANK-10 | |
| Setting up prospective collections | The biobank can provide the following service to support clients: Setting up prospective collections | MIABIS-BIOBANK-10 | |
| Access to omics data | The biobank can provide the following service to support clients: Access to omics data | MIABIS-BIOBANK-10 | |
| Access to laboratory analysis data | The biobank can provide the following service to support clients: Access to laboratory analysis data | MIABIS-BIOBANK-10 | |
| Access to donor's clinical data | The biobank can provide the following service to support clients: Access to donor's clinical data | MIABIS-BIOBANK-10 | |
| Access to pathology archive | The biobank can provide the following service to support clients: Access to pathology archive | MIABIS-BIOBANK-10 | |
| Access to radiology archive | The biobank can provide the following service to support clients: Access to radiology archive | MIABIS-BIOBANK-10 | |
| Access to national medical registries | The biobank can provide the following service to support clients: Access to national medical registries | MIABIS-BIOBANK-10 | |
| Other | The biobank can provide the following service to support clients: Other | MIABIS-BIOBANK-10 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| ISO 20387 | The biobank is certified or accredited for the following standard: ISO 20387 | MIABIS-BIOBANK-12 | |
| ISO 9001 | The biobank is certified or accredited for the following standard: ISO 9001 | MIABIS-BIOBANK-12 | |
| Other | The biobank is certified or accredited for the following standard: other standard/s | MIABIS-BIOBANK-12 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Routine health care setting | MIABIS-COLLECTION-17, MIABIS-RESEARCHRESOURCE-17 | ||
| Clinical trial | MIABIS-COLLECTION-17, MIABIS-RESEARCHRESOURCE-17 | ||
| Research study | MIABIS-COLLECTION-17, MIABIS-RESEARCHRESOURCE-17 | ||
| Public health/population based study | MIABIS-COLLECTION-17, MIABIS-RESEARCHRESOURCE-17 | ||
| Museum and/or archeological collection | MIABIS-COLLECTION-17, MIABIS-RESEARCHRESOURCE-17 | ||
| Environment | MIABIS-COLLECTION-17, MIABIS-RESEARCHRESOURCE-17 | ||
| Unknown | MIABIS-COLLECTION-17, MIABIS-RESEARCHRESOURCE-17 | ||
| Other | MIABIS-COLLECTION-17, MIABIS-RESEARCHRESOURCE-17 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Human | The samples were collected or isolated from humans | MIABIS-COLLECTION-07, MIABIS-RESEARCHRESOURCE-07 | |
| Animal | The samples were collected or isolated from animals | MIABIS-COLLECTION-07, MIABIS-RESEARCHRESOURCE-07 | |
| Environmental | The samples were collected or isolated from the envoronment | MIABIS-COLLECTION-07, MIABIS-RESEARCHRESOURCE-07 | |
| Other |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Amniotic fluid | A specimen that is derived from amniotic fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Ascites fluid | The serous fluid which accumulates in the peritoneal cavity in ascites. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Bile | A specimen that is derived from bile. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Body cavity fluid | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Bone | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Bone marrow aspirate | Aspirate from bone marrow. | NCIT | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Bone marrow plasma | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Bone marrow, whole | A specimen that is derived from bone marrow. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Breast milk | A specimen that is derived from milk. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Bronchoalveolar lavage | Group of biomaterials present in the bronchial aveolar space of an organism which are collected through lavage including the reagents used to for the lavage process, organisms, cells, and cellular secretions present in the bronchial aveolar space. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Buffy Coat | A processed specimen which is the output of a density gradient centrifugation of an anticoagulated blood specimen that contains most of the white blood cells and platelets. | OBIB | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Cancer cell lines | An immortal cell line derived from a transformed cell that was part of a malignant tumor. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Cerebrospinal fluid | A specimen that is derived from cerbrospinal fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Cord blood | A specimen that is derived from some umbilical cord blood | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Dental pulp | The part in the center of a tooth made up of living soft tissue and cells called odontoblasts | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-142 |
| DNA | The output of an extraction process in which DNA molecules are purified in order to exclude DNA from organellas. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Embryo | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Entire body organ | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Faeces | A specimen that is derived from feces. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Fetal tissue | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Fibroblasts | A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Food specimen | A processed specimen that is the output of a fixation process. | OBIB | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Gas, exhaled (=breath) | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Gastric fluid | A specimen that is derived from digestive system fluid or secretion. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Hair | A specimen that is derived from hair. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Immortalized cell lines | A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture). | CLO | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Isolated microbes | A specific individual microbe and its genetically identical progeny separated on a single occasion from a sample taken from a host or culture system. | IDO | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Isolated or enriched exosomes | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Isolated Tumor Cell (neoplastic cell) | An abnormal cell exhibiting dysregulation of cell proliferation or programmed cell death and capable of forming a neoplasm, an aggregate of cells in the form of a tumor mass or an excess number of abnormal cells (liquid tumor) within an organism. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Menstrual blood | The discharged blood from the uterus during the reproductive years. The discharge occurs approximately once a month. | NCIT | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Nail | A horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Nasal washing | A biospecimen collected from the nasal passages by washing. | NCIT | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Organoids | A three dimensional mass comprised of a cultured cell or tissue sample that resembles an in vivo tissue or organ. Organoids are grown in vitro from a combination of cells or tissue fragments cultured in medium containing a variety of biochemical factors. | NCIT | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Pericardial fluid | A specimen that is derived from pericardial fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Peripheral blood mononuclear cells (PBMC) | A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Placenta | A specimen that is derived from placenta. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Plasma | a material entity which corresponds to the FLUIDS component of blood, in which the blood cells are suspended. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Pleural fluid | A specimen that is derived from pleural fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Post-mortem tissue | A specimen that was taken from a dead organism | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Primary cells | A cell taken directly from a living organism, which is not immortalized. | BTO | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Proteins | An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA, and any derivatives thereof. | PR | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Red blood cells | A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| RNA | an extract which is the output of an extraction process in which RNA molecules are isolated from a specimen. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Saliva | A specimen that is derived from saliva. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Semen | A specimen that is derived from some semen | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Serum | A material entity which derives from blood and corresponds to blood plasma without fibrinogen or the other clotting factors. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Specimen from environment | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Sputum | A specimen that is derived from sputum. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Stem cells (and iPS cells) | A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Swab | A specimen that is stored on a swab as the output of a collecting specimen with swab process. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Sweat | A specimen that is derived from sweat. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Synovial fluid | A specimen that is derived from synovial fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Tears | Aqueous substance secreted by the lacrimal gland. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Teeth | Skeletal element within the mouth (or in some species, upper part of the digestive tract) that is composed of dentine and is used in procuring or masticating food. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Tissue (FFPE) | A specimen that has been fixed in formalin and embedded in paraffin. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Tissue (frozen) | A specimen that has been frozen in order to store it. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Umbilical cord | The connecting cord from the developing embryo to the placenta. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Urine | a portion of urine collected from an organism | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Urine Sediment | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Vitreous fluid | A specimen that is derived from vireous humor. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Whole blood | A material entity derived from a portion of blood collected from an organism | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Whole blood, dried (e.g. Guthrie cards) | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Other | Any other type of material taken from a biological entity, e.g. amniotic fluid, cerebrospinal fluid (CSV), mitochondrial RNA. | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Male | male | MIABIS-COLLECTION-08, MIABIS-RESEARCHRESOURCE-08, MIABIS-SAMPLEDONOR-02 | |
| Female | female | MIABIS-COLLECTION-08, MIABIS-RESEARCHRESOURCE-08, MIABIS-SAMPLEDONOR-02 | |
| Unknown | a proper value is applicable but not known | MIABIS-COLLECTION-08, MIABIS-RESEARCHRESOURCE-08, MIABIS-SAMPLEDONOR-02 | |
| Undifferentiated | undifferentiated, the gender could not be uniquely identified such as hermaphrodite | MIABIS-COLLECTION-08, MIABIS-RESEARCHRESOURCE-08, MIABIS-SAMPLEDONOR-02 | |
| Not applicable | The samples have no applicable sex (to enable description of non-human samples) | MIABIS-COLLECTION-08, MIABIS-RESEARCHRESOURCE-08, MIABIS-SAMPLEDONOR-02 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| RT | Room temperature | SPREC V4.0 | MIABIS-SAMPLE-02 |
| 2 °C to 10°C | between 2 °C and 10 °C | SPREC V4.0 | MIABIS-SAMPLE-02 |
| -18 °C to -35 °C | between -18 °C and -35 °C | SPREC V4.0 | MIABIS-SAMPLE-02 |
| -60 °C to -85 °C | between -60 °C and -85 °C | SPREC V4.0 | MIABIS-SAMPLE-02 |
| LN | liquid nitrogen vapour-phase | MIABIS-SAMPLE-02 | |
| LN | liquid nitrogen liquid-phase | MIABIS-SAMPLE-02 | |
| Other | any other temperature or long time storage information | SPREC V4.0 | MIABIS-SAMPLE-02 |
| Attribute Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Commercial use | MIABIS-COLLECTION-19, MIABIS-RESEARCHRESOURCE-19 | ||
| Collaboration | MIABIS-COLLECTION-19, MIABIS-RESEARCHRESOURCE-19 | ||
| Specific research use | MIABIS-COLLECTION-19, MIABIS-RESEARCHRESOURCE-19 | ||
| Genetic data use | MIABIS-COLLECTION-19, MIABIS-RESEARCHRESOURCE-19 | ||
| Outside EU access | MIABIS-COLLECTION-19, MIABIS-RESEARCHRESOURCE-19 | ||
| Xenograft | MIABIS-COLLECTION-19, MIABIS-RESEARCHRESOURCE-19 | ||
| Other animal work | MIABIS-COLLECTION-19, MIABIS-RESEARCHRESOURCE-19 | ||
| Other | MIABIS-COLLECTION-19, MIABIS-RESEARCHRESOURCE-19 |