{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":587907010,"defaultBranch":"main","name":"WasteFlow","ownerLogin":"BCCDC-PHL","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-01-11T21:37:47.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/69595841?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1708536676.0","currentOid":""},"activityList":{"items":[{"before":"6d74b7a8833f625a95a3fc86e1a009001450d162","after":"a6a2210dda62538e0e644f523a7938bbac6731cf","ref":"refs/heads/main","pushedAt":"2024-07-30T23:54:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Add data.table thread param to fix (https://github.com/BCCDC-PHL/WasteFlow/issues/1)","shortMessageHtmlLink":"Add data.table thread param to fix (#1)"}},{"before":"3442d69ea378911e80c73365d225faecf47f3b0c","after":"6d74b7a8833f625a95a3fc86e1a009001450d162","ref":"refs/heads/main","pushedAt":"2024-07-30T23:49:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Pass DT thread CLI option to mutation_watchlist.R","shortMessageHtmlLink":"Pass DT thread CLI option to mutation_watchlist.R"}},{"before":"b4b8c7a61db6972a58ce53bb1e9cd855c5aa3344","after":"3442d69ea378911e80c73365d225faecf47f3b0c","ref":"refs/heads/main","pushedAt":"2024-07-30T23:45:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Add data.table thread parameter to adjust from CLI","shortMessageHtmlLink":"Add data.table thread parameter to adjust from CLI"}},{"before":"6607e2e5d964b65c97f5bc8088f83d5651757723","after":"b4b8c7a61db6972a58ce53bb1e9cd855c5aa3344","ref":"refs/heads/main","pushedAt":"2024-07-30T23:20:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Fix segfault error in [#1](https://github.com/BCCDC-PHL/WasteFlow/issues/1)\n\nDecrease number of threads used by data.table with setDTthreads() function.","shortMessageHtmlLink":"Fix segfault error in [#1](#1)"}},{"before":"86a6424ddd7dfe30dedfe9d2125de808cf90a8ee","after":"6607e2e5d964b65c97f5bc8088f83d5651757723","ref":"refs/heads/main","pushedAt":"2024-06-05T22:48:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Fix segfault error by changing order of cols\n\nsetorder was causing segfault error on HPC and editing order of cols resolved.","shortMessageHtmlLink":"Fix segfault error by changing order of cols"}},{"before":"5be8b447d96fac7a1a724964c495a5cb45250d41","after":"86a6424ddd7dfe30dedfe9d2125de808cf90a8ee","ref":"refs/heads/main","pushedAt":"2024-04-04T18:38:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Add details about parameters","shortMessageHtmlLink":"Add details about parameters"}},{"before":"f46b943684dddca1bd0854f3ec08d1ea8e73acc7","after":"5be8b447d96fac7a1a724964c495a5cb45250d41","ref":"refs/heads/main","pushedAt":"2024-04-04T18:33:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Add info on rerun_mut","shortMessageHtmlLink":"Add info on rerun_mut"}},{"before":"44f74d737b07cb0a992517689d7c8320ef486040","after":"f46b943684dddca1bd0854f3ec08d1ea8e73acc7","ref":"refs/heads/main","pushedAt":"2024-02-21T17:29:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Bump version to reflect upgrade to Freyja\n\nv1.4.7 to v1.4.9","shortMessageHtmlLink":"Bump version to reflect upgrade to Freyja"}},{"before":"11b5ad939fd7a8c404aead5eaa0e55c7bd8019ff","after":"44f74d737b07cb0a992517689d7c8320ef486040","ref":"refs/heads/main","pushedAt":"2024-02-21T17:27:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Upgrade to Freyja v1.4.9\n\nFreyja v1.4.9 has bug fixes and more descriptive failed sample logs","shortMessageHtmlLink":"Upgrade to Freyja v1.4.9"}},{"before":"f3ffe63b8e55d99ecf2db37113abdceba5ba4745","after":"11b5ad939fd7a8c404aead5eaa0e55c7bd8019ff","ref":"refs/heads/main","pushedAt":"2024-02-07T20:26:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Correct names of CL options","shortMessageHtmlLink":"Correct names of CL options"}},{"before":"f3ffe63b8e55d99ecf2db37113abdceba5ba4745","after":null,"ref":"refs/tags/v2.0.2","pushedAt":"2024-02-07T18:58:17.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"}},{"before":"c2a007aecb8abb2dfd5d0180b89eb0afddfdd450","after":"f3ffe63b8e55d99ecf2db37113abdceba5ba4745","ref":"refs/heads/main","pushedAt":"2024-01-23T22:51:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Bump for bug fix","shortMessageHtmlLink":"Bump for bug fix"}},{"before":"e6814464dd7479a68ab891d49495ea3fa15b39c3","after":"c2a007aecb8abb2dfd5d0180b89eb0afddfdd450","ref":"refs/heads/main","pushedAt":"2024-01-23T22:51:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Correct mut table dir in collectTables to match config","shortMessageHtmlLink":"Correct mut table dir in collectTables to match config"}},{"before":"01803fa48992d6810857cab85bfcecb57da9961a","after":"e6814464dd7479a68ab891d49495ea3fa15b39c3","ref":"refs/heads/main","pushedAt":"2024-01-12T01:27:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Specify input filename rep regex","shortMessageHtmlLink":"Specify input filename rep regex"}},{"before":"de2463227ddadeacdac6d9e81a25865c6a6b748c","after":"01803fa48992d6810857cab85bfcecb57da9961a","ref":"refs/heads/main","pushedAt":"2023-12-28T22:25:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Make tag more informative","shortMessageHtmlLink":"Make tag more informative"}},{"before":"d27575635915dff4944b53bfca44132a7176c198","after":"de2463227ddadeacdac6d9e81a25865c6a6b748c","ref":"refs/heads/main","pushedAt":"2023-12-28T21:32:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Fix bug in trim galore and bwa processes","shortMessageHtmlLink":"Fix bug in trim galore and bwa processes"}},{"before":"a78462d3a31cae129addbb189423a9c33301cd4b","after":null,"ref":"refs/tags/v2.0.1","pushedAt":"2023-12-27T22:36:38.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"}},{"before":"9e86248b1b7306565839f8676052aa348d5b989f","after":"d27575635915dff4944b53bfca44132a7176c198","ref":"refs/heads/main","pushedAt":"2023-12-27T22:35:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Reuse ref_ch instead of redundantly redefining in effluent workflow","shortMessageHtmlLink":"Reuse ref_ch instead of redundantly redefining in effluent workflow"}},{"before":"911d8497afe1344b70128ee5c2cec4adc65d73b5","after":"9e86248b1b7306565839f8676052aa348d5b989f","ref":"refs/heads/main","pushedAt":"2023-12-27T22:32:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Edit mmd to reflect change to ref_ch\n\nthe ref_ch from treatment is reused in effluent workflow instead of being redefined redundantly.","shortMessageHtmlLink":"Edit mmd to reflect change to ref_ch"}},{"before":"3e54ee0fd500181f9dbf6b8786439a554ddfc9f9","after":"911d8497afe1344b70128ee5c2cec4adc65d73b5","ref":"refs/heads/main","pushedAt":"2023-12-21T17:27:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Fix multiline code chunks","shortMessageHtmlLink":"Fix multiline code chunks"}},{"before":"fe0f417b62913f43a043b35d37a32004f141fa33","after":"3e54ee0fd500181f9dbf6b8786439a554ddfc9f9","ref":"refs/heads/main","pushedAt":"2023-12-21T17:25:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Add other workflows and example commands","shortMessageHtmlLink":"Add other workflows and example commands"}},{"before":"2da9c59f66e8ce3e2fbf50ecdddb0ae72e84c336","after":"fe0f417b62913f43a043b35d37a32004f141fa33","ref":"refs/heads/main","pushedAt":"2023-12-19T05:11:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Delete pics/WF_v2.0.1_default.mmd","shortMessageHtmlLink":"Delete pics/WF_v2.0.1_default.mmd"}},{"before":"432ac24d1e72ba39a312deade8de5cb000d511b0","after":"2da9c59f66e8ce3e2fbf50ecdddb0ae72e84c336","ref":"refs/heads/main","pushedAt":"2023-12-19T05:09:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Add dag of defaults","shortMessageHtmlLink":"Add dag of defaults"}},{"before":"a78462d3a31cae129addbb189423a9c33301cd4b","after":"432ac24d1e72ba39a312deade8de5cb000d511b0","ref":"refs/heads/main","pushedAt":"2023-12-19T05:05:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Add dag of defaults","shortMessageHtmlLink":"Add dag of defaults"}},{"before":"45ba4b9f3b35516b5e83f3d14064d2dc9d0610f5","after":null,"ref":"refs/tags/v2.0.1","pushedAt":"2023-12-18T18:42:21.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"}},{"before":"45ba4b9f3b35516b5e83f3d14064d2dc9d0610f5","after":"a78462d3a31cae129addbb189423a9c33301cd4b","ref":"refs/heads/main","pushedAt":"2023-12-18T18:33:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Track failed samples in trace file","shortMessageHtmlLink":"Track failed samples in trace file"}},{"before":"19a39c8bd55302a0fb5bb7d09c3a9e036fb302b6","after":"45ba4b9f3b35516b5e83f3d14064d2dc9d0610f5","ref":"refs/heads/main","pushedAt":"2023-11-16T22:55:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Bump version\n\nChanges in errorStrategy and qc_align process commands","shortMessageHtmlLink":"Bump version"}},{"before":"19a39c8bd55302a0fb5bb7d09c3a9e036fb302b6","after":null,"ref":"refs/tags/v2.0.1","pushedAt":"2023-11-16T22:54:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"}},{"before":"f11c3584b13cec426c94555861c4e8eb080acd22","after":null,"ref":"refs/tags/v2.0.1","pushedAt":"2023-11-16T22:52:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"}},{"before":"641c1562aada9ac22238121f0e0ed244f07082e3","after":"19a39c8bd55302a0fb5bb7d09c3a9e036fb302b6","ref":"refs/heads/main","pushedAt":"2023-11-16T22:21:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"j3551ca","name":null,"path":"/j3551ca","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39065261?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEjYHfcAA","startCursor":null,"endCursor":null}},"title":"Activity ยท BCCDC-PHL/WasteFlow"}