.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

*.log
*.log.gz

# Django stuff:
local_settings.py
db.sqlite3

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/

#python
.pyc

#ignore testing files
test_app.py

#ignore all the following files
Rfam.pdb.gz
align_chains.py
alignments
circular_diagram_14.py
circular_diagram_configuration.py
circular_diagram_pdf/
dict.csv
fr3d_interactions.py
functional_annotation.py
get_ligands.py
get_protein_compounds.py
interactions/
js/
loop_lists/
motif_variability.py
pfam_chain_mapping.py
process_annotation.py
protein_chain_annotation.csv
result_example1.txt
results/
rfam_chain_mapping.py
ribosome_chain_annotation.csv
ribosome_chain_annotation_new.csv
static/js/heatmap_new.js
status.txt
static/
old/

#ignore the following dir
uniprot_pdb_mapping/
ribosome_annotation_output/