From 43d2ac5714f3eb6d1b210b83da4f06bb53b78ab6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sara=20Monz=C3=B3n?= <sara.monzon.fdz@gmail.com>
Date: Thu, 1 Feb 2024 10:15:39 +0100
Subject: [PATCH] updated changelog and bumped new version

---
 CHANGELOG.md          | 25 ++++++++++++++++++++++---
 bu_isciii/__main__.py |  2 +-
 setup.py              |  2 +-
 3 files changed, 24 insertions(+), 5 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 56cf4020..ccd336a7 100755
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -19,6 +19,7 @@ Code contributions to the release:
 
 
 ### Template fixes and updates
+
 - Added templates:
     - freebayes
 
@@ -42,13 +43,31 @@ Code contributions to the release:
 
 #### Removed
 
-
 ### Requirements
 
 - Added PyYAML
 
+## [1.0.2hot] - 2024-0X-0X : https://github.com/BU-ISCIII/buisciii-tools/releases/tag/1.0.2
+
+### Credits
+
+Code contributions to the hotfix:
 
-## [1.0.1hot] - 2024-0X-0X : https://github.com/BU-ISCIII/buisciii-tools/releases/tag/1.0.1
+### Template fixes and updates
+
+### Modules
+
+#### Added enhancements
+
+#### Fixes
+
+#### Changed
+
+#### Removed
+
+### Requirements
+
+## [1.0.1] - 2024-02-01 : https://github.com/BU-ISCIII/buisciii-tools/releases/tag/1.0.1
 
 ### Credits
 
@@ -60,7 +79,6 @@ Code contributions to the hotfix:
 - [Sarai Varona](https://github.com/svarona)
 - [Daniel Valle](https://github.com/Daniel-VM)
 
-
 ### Template fixes and updates
 
 - Added new line in `buisciii_tools/bu_isciii/templates/viralrecon/ANALYSIS/lablog_viralrecon`, in order to automatically rename `ANALYSIS0X_MAG` directory with the current date. 
@@ -69,6 +87,7 @@ Code contributions to the hotfix:
 - Introduced better error handling in excel_generator.py. Now it can also be used for single files
 - Brought back `PASS_ONLY` to exometrio's `exomiser_configfile.yml`
 - [#187](https://github.com/BU-ISCIII/buisciii-tools/pull/187) - Added new template for bacterial assembly. Allowing for short, long and hybrid assembly.
+- [#190](https://github.com/BU-ISCIII/buisciii-tools/pull/190) - renamed some variables in create-summary_report from viralrecon template as their name was misleading and fixed a small typo in regex finding in excel_generator.py
 
 ### Modules
 
diff --git a/bu_isciii/__main__.py b/bu_isciii/__main__.py
index 1233f4fd..6eb4e9ad 100644
--- a/bu_isciii/__main__.py
+++ b/bu_isciii/__main__.py
@@ -56,7 +56,7 @@ def run_bu_isciii():
     )
 
     # stderr.print("[green]                                          `._,._,'\n", highlight=False)
-    __version__ = "1.0.0"
+    __version__ = "1.0.1"
     stderr.print(
         "[grey39]    BU-ISCIII-tools version {}".format(__version__), highlight=False
     )
diff --git a/setup.py b/setup.py
index 22c87dbd..901abc6b 100644
--- a/setup.py
+++ b/setup.py
@@ -2,7 +2,7 @@
 
 from setuptools import setup, find_packages
 
-version = "0.0.1"
+version = "1.0.1"
 
 with open("README.md") as f:
     readme = f.read()