Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

FASTQ integrity check to be added to new-service tool #319

Open
juanledesma78 opened this issue Aug 20, 2024 · 0 comments
Open

FASTQ integrity check to be added to new-service tool #319

juanledesma78 opened this issue Aug 20, 2024 · 0 comments

Comments

@juanledesma78
Copy link
Member

Before starting the data analysis of a service, it would be worth checking the integrity of the FASTQ files in case any file is corrupted. At the time being, this check can be manually done by using

md5sum -c md5sum_Instrument_GEN_XXX_YYYMMDD_User.md5

being the .md5 file located within the directory where the FASTQ files have been trasferred.
Adding this check would avoid unnecessary delays for the service.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant