From 1af3694d596e3f9dd351c748d2f4791ae6f6616c Mon Sep 17 00:00:00 2001 From: saramonzon Date: Wed, 3 Apr 2019 12:28:33 +0200 Subject: [PATCH 01/12] Added samples table in admin --- admin.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/admin.py b/admin.py index d1a1907..75931c5 100644 --- a/admin.py +++ b/admin.py @@ -35,6 +35,9 @@ class RunErrorsAdmin (admin.ModelAdmin): class RunStatesAdmin (admin.ModelAdmin): list_display = ('runStateName',) +class SamplesInProjectAdmin (admin.ModelAdmin): + list_display = ('project_id','sampleName','barcodeName','pfClusters','percentInProject','yieldMb','qualityQ30') + admin.site.register(RunningParameters , RunningParametersAdmin) admin.site.register(RunProcess , RunProcessAdmin) @@ -42,3 +45,4 @@ class RunStatesAdmin (admin.ModelAdmin): admin.site.register(Projects, ProjectsAdmin) admin.site.register(RunErrors, RunErrorsAdmin) admin.site.register(RunStates, RunStatesAdmin) +admin.site.register(SamplesInProject, SamplesInProjectAdmin) From 629ac6715cb203febba09cfd7467df1c1267a89c Mon Sep 17 00:00:00 2001 From: luissian Date: Sun, 19 May 2019 22:17:53 +0200 Subject: [PATCH 02/12] Implemented test for MiSeq runs --- cron.py | 3 +- .../iSkyLIMS_wetlab/css/styles/a11y-dark.css | 99 +++ .../iSkyLIMS_wetlab/css/styles/a11y-light.css | 99 +++ static/iSkyLIMS_wetlab/css/styles/agate.css | 108 +++ .../css/styles/an-old-hope.css | 89 +++ .../css/styles/androidstudio.css | 66 ++ .../css/styles/arduino-light.css | 88 +++ static/iSkyLIMS_wetlab/css/styles/arta.css | 73 ++ static/iSkyLIMS_wetlab/css/styles/ascetic.css | 45 ++ .../css/styles/atelier-cave-dark.css | 83 +++ .../css/styles/atelier-cave-light.css | 85 +++ .../css/styles/atelier-dune-dark.css | 69 ++ .../css/styles/atelier-dune-light.css | 69 ++ .../css/styles/atelier-estuary-dark.css | 84 +++ .../css/styles/atelier-estuary-light.css | 84 +++ .../css/styles/atelier-forest-dark.css | 69 ++ .../css/styles/atelier-forest-light.css | 69 ++ .../css/styles/atelier-heath-dark.css 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https://github.com/JesseLeite/an-old-hope-syntax-atom + +*/ + +/* Death Star Comment */ +.hljs-comment, +.hljs-quote +{ + color: #B6B18B; +} + +/* Darth Vader */ +.hljs-variable, +.hljs-template-variable, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-deletion +{ + color: #EB3C54; +} + +/* Threepio */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params, +.hljs-meta, +.hljs-link +{ + color: #E7CE56; +} + +/* Luke Skywalker */ +.hljs-attribute +{ + color: #EE7C2B; +} + +/* Obi Wan Kenobi */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition +{ + color: #4FB4D7; +} + +/* Yoda */ +.hljs-title, +.hljs-section +{ + color: #78BB65; +} + +/* Mace Windu */ +.hljs-keyword, +.hljs-selector-tag +{ + color: #B45EA4; +} + +/* Millenium Falcon */ +.hljs +{ + display: block; + overflow-x: auto; + background: #1C1D21; + color: #c0c5ce; + padding: 0.5em; +} + +.hljs-emphasis +{ + font-style: italic; +} + 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#e8bf6a; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/arduino-light.css b/static/iSkyLIMS_wetlab/css/styles/arduino-light.css new file mode 100644 index 0000000..4b8b7fd --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/arduino-light.css @@ -0,0 +1,88 @@ +/* + +Arduino® Light Theme - Stefania Mellai + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #FFFFFF; +} + +.hljs, +.hljs-subst { + color: #434f54; +} + +.hljs-keyword, +.hljs-attribute, +.hljs-selector-tag, +.hljs-doctag, +.hljs-name { + color: #00979D; +} + +.hljs-built_in, +.hljs-literal, +.hljs-bullet, +.hljs-code, +.hljs-addition { + color: #D35400; +} + +.hljs-regexp, +.hljs-symbol, +.hljs-variable, +.hljs-template-variable, +.hljs-link, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #00979D; +} + +.hljs-type, +.hljs-string, +.hljs-selector-id, +.hljs-selector-class, +.hljs-quote, +.hljs-template-tag, +.hljs-deletion { + color: #005C5F; +} + +.hljs-title, +.hljs-section { + color: #880000; + font-weight: bold; +} + +.hljs-comment { + color: rgba(149,165,166,.8); +} + +.hljs-meta-keyword { + color: #728E00; +} + +.hljs-meta { + color: #728E00; + color: #434f54; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} + +.hljs-function { + color: #728E00; +} + +.hljs-number { + color: #8A7B52; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/arta.css b/static/iSkyLIMS_wetlab/css/styles/arta.css new file mode 100644 index 0000000..75ef3a9 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/arta.css @@ -0,0 +1,73 @@ +/* +Date: 17.V.2011 +Author: pumbur +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #222; +} + +.hljs, +.hljs-subst { + color: #aaa; +} + +.hljs-section { + color: #fff; +} + +.hljs-comment, +.hljs-quote, +.hljs-meta { + color: #444; +} + +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-regexp { + color: #ffcc33; +} + +.hljs-number, +.hljs-addition { + color: #00cc66; +} + +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-template-variable, +.hljs-attribute, +.hljs-link { + color: #32aaee; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #6644aa; +} + +.hljs-title, +.hljs-variable, +.hljs-deletion, +.hljs-template-tag { + color: #bb1166; +} + +.hljs-section, +.hljs-doctag, +.hljs-strong { + font-weight: bold; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/ascetic.css b/static/iSkyLIMS_wetlab/css/styles/ascetic.css new file mode 100644 index 0000000..48397e8 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/ascetic.css @@ -0,0 +1,45 @@ +/* + +Original style from softwaremaniacs.org (c) Ivan Sagalaev + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: white; + color: black; +} + +.hljs-string, +.hljs-variable, +.hljs-template-variable, +.hljs-symbol, +.hljs-bullet, +.hljs-section, +.hljs-addition, +.hljs-attribute, +.hljs-link { + color: #888; +} + +.hljs-comment, +.hljs-quote, +.hljs-meta, +.hljs-deletion { + color: #ccc; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-section, +.hljs-name, +.hljs-type, +.hljs-strong { + font-weight: bold; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-cave-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-cave-dark.css new file mode 100644 index 0000000..65428f3 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-cave-dark.css @@ -0,0 +1,83 @@ +/* Base16 Atelier Cave Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/cave) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Cave Comment */ +.hljs-comment, +.hljs-quote { + color: #7e7887; +} + +/* Atelier-Cave Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-regexp, +.hljs-link, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #be4678; +} + +/* Atelier-Cave Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #aa573c; +} + +/* Atelier-Cave Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #2a9292; +} + +/* Atelier-Cave Blue */ +.hljs-title, +.hljs-section { + color: #576ddb; +} + +/* Atelier-Cave Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #955ae7; +} + +.hljs-deletion, +.hljs-addition { + color: #19171c; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #be4678; +} + +.hljs-addition { + background-color: #2a9292; +} + +.hljs { + display: block; + overflow-x: auto; + background: #19171c; + color: #8b8792; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-cave-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-cave-light.css new file mode 100644 index 0000000..b419f9f --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-cave-light.css @@ -0,0 +1,85 @@ +/* Base16 Atelier Cave Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/cave) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Cave Comment */ +.hljs-comment, +.hljs-quote { + color: #655f6d; +} + +/* Atelier-Cave Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #be4678; +} + +/* Atelier-Cave Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #aa573c; +} + +/* Atelier-Cave Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #2a9292; +} + +/* Atelier-Cave Blue */ +.hljs-title, +.hljs-section { + color: #576ddb; +} + +/* Atelier-Cave Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #955ae7; +} + +.hljs-deletion, +.hljs-addition { + color: #19171c; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #be4678; +} + +.hljs-addition { + background-color: #2a9292; +} + +.hljs { + display: block; + overflow-x: auto; + background: #efecf4; + color: #585260; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-dune-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-dune-dark.css new file mode 100644 index 0000000..1684f52 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-dune-dark.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Dune Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/dune) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Dune Comment */ +.hljs-comment, +.hljs-quote { + color: #999580; +} + +/* Atelier-Dune Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #d73737; +} + +/* Atelier-Dune Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #b65611; +} + +/* Atelier-Dune Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #60ac39; +} + +/* Atelier-Dune Blue */ +.hljs-title, +.hljs-section { + color: #6684e1; +} + +/* Atelier-Dune Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #b854d4; +} + +.hljs { + display: block; + overflow-x: auto; + background: #20201d; + color: #a6a28c; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-dune-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-dune-light.css new file mode 100644 index 0000000..547719d --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-dune-light.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Dune Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/dune) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Dune Comment */ +.hljs-comment, +.hljs-quote { + color: #7d7a68; +} + +/* Atelier-Dune Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #d73737; +} + +/* Atelier-Dune Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #b65611; +} + +/* Atelier-Dune Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #60ac39; +} + +/* Atelier-Dune Blue */ +.hljs-title, +.hljs-section { + color: #6684e1; +} + +/* Atelier-Dune Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #b854d4; +} + +.hljs { + display: block; + overflow-x: auto; + background: #fefbec; + color: #6e6b5e; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-estuary-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-estuary-dark.css new file mode 100644 index 0000000..a5e5071 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-estuary-dark.css @@ -0,0 +1,84 @@ +/* Base16 Atelier Estuary Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/estuary) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Estuary Comment */ +.hljs-comment, +.hljs-quote { + color: #878573; +} + +/* Atelier-Estuary Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #ba6236; +} + +/* Atelier-Estuary Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #ae7313; +} + +/* Atelier-Estuary Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #7d9726; +} + +/* Atelier-Estuary Blue */ +.hljs-title, +.hljs-section { + color: #36a166; +} + +/* Atelier-Estuary Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #5f9182; +} + +.hljs-deletion, +.hljs-addition { + color: #22221b; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #ba6236; +} + +.hljs-addition { + background-color: #7d9726; +} + +.hljs { + display: block; + overflow-x: auto; + background: #22221b; + color: #929181; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-estuary-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-estuary-light.css new file mode 100644 index 0000000..1daee5d --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-estuary-light.css @@ -0,0 +1,84 @@ +/* Base16 Atelier Estuary Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/estuary) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Estuary Comment */ +.hljs-comment, +.hljs-quote { + color: #6c6b5a; +} + +/* Atelier-Estuary Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #ba6236; +} + +/* Atelier-Estuary Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #ae7313; +} + +/* Atelier-Estuary Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #7d9726; +} + +/* Atelier-Estuary Blue */ +.hljs-title, +.hljs-section { + color: #36a166; +} + +/* Atelier-Estuary Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #5f9182; +} + +.hljs-deletion, +.hljs-addition { + color: #22221b; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #ba6236; +} + +.hljs-addition { + background-color: #7d9726; +} + +.hljs { + display: block; + overflow-x: auto; + background: #f4f3ec; + color: #5f5e4e; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-forest-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-forest-dark.css new file mode 100644 index 0000000..0ef4fae --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-forest-dark.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Forest Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/forest) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Forest Comment */ +.hljs-comment, +.hljs-quote { + color: #9c9491; +} + +/* Atelier-Forest Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #f22c40; +} + +/* Atelier-Forest Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #df5320; +} + +/* Atelier-Forest Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #7b9726; +} + +/* Atelier-Forest Blue */ +.hljs-title, +.hljs-section { + color: #407ee7; +} + +/* Atelier-Forest Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #6666ea; +} + +.hljs { + display: block; + overflow-x: auto; + background: #1b1918; + color: #a8a19f; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-forest-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-forest-light.css new file mode 100644 index 0000000..bbedde1 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-forest-light.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Forest Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/forest) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Forest Comment */ +.hljs-comment, +.hljs-quote { + color: #766e6b; +} + +/* Atelier-Forest Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #f22c40; +} + +/* Atelier-Forest Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #df5320; +} + +/* Atelier-Forest Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #7b9726; +} + +/* Atelier-Forest Blue */ +.hljs-title, +.hljs-section { + color: #407ee7; +} + +/* Atelier-Forest Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #6666ea; +} + +.hljs { + display: block; + overflow-x: auto; + background: #f1efee; + color: #68615e; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-heath-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-heath-dark.css new file mode 100644 index 0000000..fe01ff7 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-heath-dark.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Heath Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/heath) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Heath Comment */ +.hljs-comment, +.hljs-quote { + color: #9e8f9e; +} + +/* Atelier-Heath Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #ca402b; +} + +/* Atelier-Heath Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #a65926; +} + +/* Atelier-Heath Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #918b3b; +} + +/* Atelier-Heath Blue */ +.hljs-title, +.hljs-section { + color: #516aec; +} + +/* Atelier-Heath Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #7b59c0; +} + +.hljs { + display: block; + overflow-x: auto; + background: #1b181b; + color: #ab9bab; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-heath-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-heath-light.css new file mode 100644 index 0000000..ee43786 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-heath-light.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Heath Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/heath) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Heath Comment */ +.hljs-comment, +.hljs-quote { + color: #776977; +} + +/* Atelier-Heath Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #ca402b; +} + +/* Atelier-Heath Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #a65926; +} + +/* Atelier-Heath Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #918b3b; +} + +/* Atelier-Heath Blue */ +.hljs-title, +.hljs-section { + color: #516aec; +} + +/* Atelier-Heath Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #7b59c0; +} + +.hljs { + display: block; + overflow-x: auto; + background: #f7f3f7; + color: #695d69; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-lakeside-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-lakeside-dark.css new file mode 100644 index 0000000..a937d3b --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-lakeside-dark.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Lakeside Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/lakeside) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Lakeside Comment */ +.hljs-comment, +.hljs-quote { + color: #7195a8; +} + +/* Atelier-Lakeside Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #d22d72; +} + +/* Atelier-Lakeside Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #935c25; +} + +/* Atelier-Lakeside Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #568c3b; +} + +/* Atelier-Lakeside Blue */ +.hljs-title, +.hljs-section { + color: #257fad; +} + +/* Atelier-Lakeside Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #6b6bb8; +} + +.hljs { + display: block; + overflow-x: auto; + background: #161b1d; + color: #7ea2b4; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-lakeside-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-lakeside-light.css new file mode 100644 index 0000000..6c7e8f9 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-lakeside-light.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Lakeside Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/lakeside) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Lakeside Comment */ +.hljs-comment, +.hljs-quote { + color: #5a7b8c; +} + +/* Atelier-Lakeside Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #d22d72; +} + +/* Atelier-Lakeside Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #935c25; +} + +/* Atelier-Lakeside Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #568c3b; +} + +/* Atelier-Lakeside Blue */ +.hljs-title, +.hljs-section { + color: #257fad; +} + +/* Atelier-Lakeside Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #6b6bb8; +} + +.hljs { + display: block; + overflow-x: auto; + background: #ebf8ff; + color: #516d7b; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-plateau-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-plateau-dark.css new file mode 100644 index 0000000..3bb0526 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-plateau-dark.css @@ -0,0 +1,84 @@ +/* Base16 Atelier Plateau Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/plateau) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Plateau Comment */ +.hljs-comment, +.hljs-quote { + color: #7e7777; +} + +/* Atelier-Plateau Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #ca4949; +} + +/* Atelier-Plateau Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #b45a3c; +} + +/* Atelier-Plateau Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #4b8b8b; +} + +/* Atelier-Plateau Blue */ +.hljs-title, +.hljs-section { + color: #7272ca; +} + +/* Atelier-Plateau Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #8464c4; +} + +.hljs-deletion, +.hljs-addition { + color: #1b1818; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #ca4949; +} + +.hljs-addition { + background-color: #4b8b8b; +} + +.hljs { + display: block; + overflow-x: auto; + background: #1b1818; + color: #8a8585; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-plateau-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-plateau-light.css new file mode 100644 index 0000000..5f0222b --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-plateau-light.css @@ -0,0 +1,84 @@ +/* Base16 Atelier Plateau Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/plateau) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Plateau Comment */ +.hljs-comment, +.hljs-quote { + color: #655d5d; +} + +/* Atelier-Plateau Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #ca4949; +} + +/* Atelier-Plateau Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #b45a3c; +} + +/* Atelier-Plateau Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #4b8b8b; +} + +/* Atelier-Plateau Blue */ +.hljs-title, +.hljs-section { + color: #7272ca; +} + +/* Atelier-Plateau Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #8464c4; +} + +.hljs-deletion, +.hljs-addition { + color: #1b1818; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #ca4949; +} + +.hljs-addition { + background-color: #4b8b8b; +} + +.hljs { + display: block; + overflow-x: auto; + background: #f4ecec; + color: #585050; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-savanna-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-savanna-dark.css new file mode 100644 index 0000000..38f8314 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-savanna-dark.css @@ -0,0 +1,84 @@ +/* Base16 Atelier Savanna Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/savanna) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Savanna Comment */ +.hljs-comment, +.hljs-quote { + color: #78877d; +} + +/* Atelier-Savanna Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #b16139; +} + +/* Atelier-Savanna Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #9f713c; +} + +/* Atelier-Savanna Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #489963; +} + +/* Atelier-Savanna Blue */ +.hljs-title, +.hljs-section { + color: #478c90; +} + +/* Atelier-Savanna Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #55859b; +} + +.hljs-deletion, +.hljs-addition { + color: #171c19; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #b16139; +} + +.hljs-addition { + background-color: #489963; +} + +.hljs { + display: block; + overflow-x: auto; + background: #171c19; + color: #87928a; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-savanna-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-savanna-light.css new file mode 100644 index 0000000..1ccd7c6 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-savanna-light.css @@ -0,0 +1,84 @@ +/* Base16 Atelier Savanna Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/savanna) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Savanna Comment */ +.hljs-comment, +.hljs-quote { + color: #5f6d64; +} + +/* Atelier-Savanna Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #b16139; +} + +/* Atelier-Savanna Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #9f713c; +} + +/* Atelier-Savanna Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #489963; +} + +/* Atelier-Savanna Blue */ +.hljs-title, +.hljs-section { + color: #478c90; +} + +/* Atelier-Savanna Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #55859b; +} + +.hljs-deletion, +.hljs-addition { + color: #171c19; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #b16139; +} + +.hljs-addition { + background-color: #489963; +} + +.hljs { + display: block; + overflow-x: auto; + background: #ecf4ee; + color: #526057; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-seaside-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-seaside-dark.css new file mode 100644 index 0000000..df29949 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-seaside-dark.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Seaside Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/seaside) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Seaside Comment */ +.hljs-comment, +.hljs-quote { + color: #809980; +} + +/* Atelier-Seaside Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #e6193c; +} + +/* Atelier-Seaside Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #87711d; +} + +/* Atelier-Seaside Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #29a329; +} + +/* Atelier-Seaside Blue */ +.hljs-title, +.hljs-section { + color: #3d62f5; +} + +/* Atelier-Seaside Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #ad2bee; +} + +.hljs { + display: block; + overflow-x: auto; + background: #131513; + color: #8ca68c; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-seaside-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-seaside-light.css new file mode 100644 index 0000000..9d960f2 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-seaside-light.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Seaside Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/seaside) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Seaside Comment */ +.hljs-comment, +.hljs-quote { + color: #687d68; +} + +/* Atelier-Seaside Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #e6193c; +} + +/* Atelier-Seaside Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #87711d; +} + +/* Atelier-Seaside Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #29a329; +} + +/* Atelier-Seaside Blue */ +.hljs-title, +.hljs-section { + color: #3d62f5; +} + +/* Atelier-Seaside Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #ad2bee; +} + +.hljs { + display: block; + overflow-x: auto; + background: #f4fbf4; + color: #5e6e5e; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-sulphurpool-dark.css b/static/iSkyLIMS_wetlab/css/styles/atelier-sulphurpool-dark.css new file mode 100644 index 0000000..c2ab793 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-sulphurpool-dark.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Sulphurpool Dark - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/sulphurpool) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Sulphurpool Comment */ +.hljs-comment, +.hljs-quote { + color: #898ea4; +} + +/* Atelier-Sulphurpool Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #c94922; +} + +/* Atelier-Sulphurpool Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #c76b29; +} + +/* Atelier-Sulphurpool Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #ac9739; +} + +/* Atelier-Sulphurpool Blue */ +.hljs-title, +.hljs-section { + color: #3d8fd1; +} + +/* Atelier-Sulphurpool Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #6679cc; +} + +.hljs { + display: block; + overflow-x: auto; + background: #202746; + color: #979db4; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atelier-sulphurpool-light.css b/static/iSkyLIMS_wetlab/css/styles/atelier-sulphurpool-light.css new file mode 100644 index 0000000..96c47d0 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atelier-sulphurpool-light.css @@ -0,0 +1,69 @@ +/* Base16 Atelier Sulphurpool Light - Theme */ +/* by Bram de Haan (http://atelierbram.github.io/syntax-highlighting/atelier-schemes/sulphurpool) */ +/* Original Base16 color scheme by Chris Kempson (https://github.com/chriskempson/base16) */ + +/* Atelier-Sulphurpool Comment */ +.hljs-comment, +.hljs-quote { + color: #6b7394; +} + +/* Atelier-Sulphurpool Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-regexp, +.hljs-link, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #c94922; +} + +/* Atelier-Sulphurpool Orange */ +.hljs-number, +.hljs-meta, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #c76b29; +} + +/* Atelier-Sulphurpool Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet { + color: #ac9739; +} + +/* Atelier-Sulphurpool Blue */ +.hljs-title, +.hljs-section { + color: #3d8fd1; +} + +/* Atelier-Sulphurpool Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #6679cc; +} + +.hljs { + display: block; + overflow-x: auto; + background: #f5f7ff; + color: #5e6687; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atom-one-dark-reasonable.css b/static/iSkyLIMS_wetlab/css/styles/atom-one-dark-reasonable.css new file mode 100644 index 0000000..fd41c99 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atom-one-dark-reasonable.css @@ -0,0 +1,77 @@ +/* + +Atom One Dark With support for ReasonML by Gidi Morris, based off work by Daniel Gamage + +Original One Dark Syntax theme from https://github.com/atom/one-dark-syntax + +*/ +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + line-height: 1.3em; + color: #abb2bf; + background: #282c34; + border-radius: 5px; +} +.hljs-keyword, .hljs-operator { + color: #F92672; +} +.hljs-pattern-match { + color: #F92672; +} +.hljs-pattern-match .hljs-constructor { + color: #61aeee; +} +.hljs-function { + color: #61aeee; +} +.hljs-function .hljs-params { + color: #A6E22E; +} +.hljs-function .hljs-params .hljs-typing { + color: #FD971F; +} +.hljs-module-access .hljs-module { + color: #7e57c2; +} +.hljs-constructor { + color: #e2b93d; +} +.hljs-constructor .hljs-string { + color: #9CCC65; +} +.hljs-comment, .hljs-quote { + color: #b18eb1; + font-style: italic; +} +.hljs-doctag, .hljs-formula { + color: #c678dd; +} +.hljs-section, .hljs-name, .hljs-selector-tag, .hljs-deletion, .hljs-subst { + color: #e06c75; +} +.hljs-literal { + color: #56b6c2; +} +.hljs-string, .hljs-regexp, .hljs-addition, .hljs-attribute, .hljs-meta-string { + color: #98c379; +} +.hljs-built_in, .hljs-class .hljs-title { + color: #e6c07b; +} +.hljs-attr, .hljs-variable, .hljs-template-variable, .hljs-type, .hljs-selector-class, .hljs-selector-attr, .hljs-selector-pseudo, .hljs-number { + color: #d19a66; +} +.hljs-symbol, .hljs-bullet, .hljs-link, .hljs-meta, .hljs-selector-id, .hljs-title { + color: #61aeee; +} +.hljs-emphasis { + font-style: italic; +} +.hljs-strong { + font-weight: bold; +} +.hljs-link { + text-decoration: underline; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atom-one-dark.css b/static/iSkyLIMS_wetlab/css/styles/atom-one-dark.css new file mode 100644 index 0000000..1616aaf --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atom-one-dark.css @@ -0,0 +1,96 @@ +/* + +Atom One Dark by Daniel Gamage +Original One Dark Syntax theme from https://github.com/atom/one-dark-syntax + +base: #282c34 +mono-1: #abb2bf +mono-2: #818896 +mono-3: #5c6370 +hue-1: #56b6c2 +hue-2: #61aeee +hue-3: #c678dd +hue-4: #98c379 +hue-5: #e06c75 +hue-5-2: #be5046 +hue-6: #d19a66 +hue-6-2: #e6c07b + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + color: #abb2bf; + background: #282c34; +} + +.hljs-comment, +.hljs-quote { + color: #5c6370; + font-style: italic; +} + +.hljs-doctag, +.hljs-keyword, +.hljs-formula { + color: #c678dd; +} + +.hljs-section, +.hljs-name, +.hljs-selector-tag, +.hljs-deletion, +.hljs-subst { + color: #e06c75; +} + +.hljs-literal { + color: #56b6c2; +} + +.hljs-string, +.hljs-regexp, +.hljs-addition, +.hljs-attribute, +.hljs-meta-string { + color: #98c379; +} + +.hljs-built_in, +.hljs-class .hljs-title { + color: #e6c07b; +} + +.hljs-attr, +.hljs-variable, +.hljs-template-variable, +.hljs-type, +.hljs-selector-class, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-number { + color: #d19a66; +} + +.hljs-symbol, +.hljs-bullet, +.hljs-link, +.hljs-meta, +.hljs-selector-id, +.hljs-title { + color: #61aeee; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} + +.hljs-link { + text-decoration: underline; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/atom-one-light.css b/static/iSkyLIMS_wetlab/css/styles/atom-one-light.css new file mode 100644 index 0000000..d5bd1d2 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/atom-one-light.css @@ -0,0 +1,96 @@ +/* + +Atom One Light by Daniel Gamage +Original One Light Syntax theme from https://github.com/atom/one-light-syntax + +base: #fafafa +mono-1: #383a42 +mono-2: #686b77 +mono-3: #a0a1a7 +hue-1: #0184bb +hue-2: #4078f2 +hue-3: #a626a4 +hue-4: #50a14f +hue-5: #e45649 +hue-5-2: #c91243 +hue-6: #986801 +hue-6-2: #c18401 + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + color: #383a42; + background: #fafafa; +} + +.hljs-comment, +.hljs-quote { + color: #a0a1a7; + font-style: italic; +} + +.hljs-doctag, +.hljs-keyword, +.hljs-formula { + color: #a626a4; +} + +.hljs-section, +.hljs-name, +.hljs-selector-tag, +.hljs-deletion, +.hljs-subst { + color: #e45649; +} + +.hljs-literal { + color: #0184bb; +} + +.hljs-string, +.hljs-regexp, +.hljs-addition, +.hljs-attribute, +.hljs-meta-string { + color: #50a14f; +} + +.hljs-built_in, +.hljs-class .hljs-title { + color: #c18401; +} + +.hljs-attr, +.hljs-variable, +.hljs-template-variable, +.hljs-type, +.hljs-selector-class, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-number { + color: #986801; 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of IDEs + +*/ + + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #2b2b2b; +} + +.hljs { + color: #bababa; +} + +.hljs-strong, +.hljs-emphasis { + color: #a8a8a2; +} + +.hljs-bullet, +.hljs-quote, +.hljs-link, +.hljs-number, +.hljs-regexp, +.hljs-literal { + color: #6896ba; +} + +.hljs-code, +.hljs-selector-class { + color: #a6e22e; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-section, +.hljs-attribute, +.hljs-name, +.hljs-variable { + color: #cb7832; +} + +.hljs-params { + color: #b9b9b9; +} + +.hljs-string { + color: #6a8759; +} + +.hljs-subst, +.hljs-type, +.hljs-built_in, +.hljs-builtin-name, +.hljs-symbol, +.hljs-selector-id, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-template-tag, +.hljs-template-variable, +.hljs-addition { + color: #e0c46c; +} + +.hljs-comment, +.hljs-deletion, +.hljs-meta { + color: #7f7f7f; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/dark.css b/static/iSkyLIMS_wetlab/css/styles/dark.css new file mode 100644 index 0000000..b4724f5 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/dark.css @@ -0,0 +1,63 @@ +/* + +Dark style from softwaremaniacs.org (c) Ivan Sagalaev + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #444; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-section, +.hljs-link { + color: white; +} + +.hljs, +.hljs-subst { + color: #ddd; +} + +.hljs-string, +.hljs-title, +.hljs-name, +.hljs-type, +.hljs-attribute, +.hljs-symbol, +.hljs-bullet, +.hljs-built_in, +.hljs-addition, +.hljs-variable, +.hljs-template-tag, +.hljs-template-variable { + color: #d88; +} + +.hljs-comment, +.hljs-quote, +.hljs-deletion, +.hljs-meta { + color: #777; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-title, +.hljs-section, +.hljs-doctag, +.hljs-type, +.hljs-name, +.hljs-strong { + font-weight: bold; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/darkula.css b/static/iSkyLIMS_wetlab/css/styles/darkula.css new file mode 100644 index 0000000..f4646c3 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/darkula.css @@ -0,0 +1,6 @@ +/* + Deprecated due to a typo in the name and left here for compatibility purpose only. + Please use darcula.css instead. +*/ + +@import url('darcula.css'); diff --git a/static/iSkyLIMS_wetlab/css/styles/default.css b/static/iSkyLIMS_wetlab/css/styles/default.css new file mode 100644 index 0000000..f1bfade --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/default.css @@ -0,0 +1,99 @@ +/* + +Original highlight.js style (c) Ivan Sagalaev + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #F0F0F0; +} + + +/* Base color: saturation 0; */ + +.hljs, +.hljs-subst { + color: #444; +} + +.hljs-comment { + color: #888888; +} + +.hljs-keyword, +.hljs-attribute, +.hljs-selector-tag, +.hljs-meta-keyword, +.hljs-doctag, +.hljs-name { + font-weight: bold; +} + + +/* User color: hue: 0 */ + +.hljs-type, +.hljs-string, +.hljs-number, +.hljs-selector-id, +.hljs-selector-class, +.hljs-quote, +.hljs-template-tag, +.hljs-deletion { + color: #880000; +} + +.hljs-title, +.hljs-section { + color: #880000; + font-weight: bold; +} + +.hljs-regexp, +.hljs-symbol, +.hljs-variable, +.hljs-template-variable, +.hljs-link, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #BC6060; +} + + +/* Language color: hue: 90; */ + +.hljs-literal { + color: #78A960; +} + +.hljs-built_in, +.hljs-bullet, +.hljs-code, +.hljs-addition { + color: #397300; +} + + +/* Meta color: hue: 200 */ + +.hljs-meta { + color: #1f7199; +} + +.hljs-meta-string { + color: #4d99bf; +} + + +/* Misc effects */ + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/docco.css b/static/iSkyLIMS_wetlab/css/styles/docco.css new file mode 100644 index 0000000..db366be --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/docco.css @@ -0,0 +1,97 @@ +/* +Docco style used in http://jashkenas.github.com/docco/ converted by Simon Madine (@thingsinjars) +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + color: #000; + background: #f8f8ff; +} + +.hljs-comment, +.hljs-quote { + color: #408080; + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-subst { + color: #954121; +} + +.hljs-number { + color: #40a070; +} + +.hljs-string, +.hljs-doctag { + color: #219161; +} + +.hljs-selector-id, +.hljs-selector-class, +.hljs-section, +.hljs-type { + color: #19469d; +} + +.hljs-params { + color: #00f; +} + +.hljs-title { + color: #458; + font-weight: bold; +} + +.hljs-tag, +.hljs-name, +.hljs-attribute { + color: #000080; + font-weight: normal; +} + +.hljs-variable, +.hljs-template-variable { + color: #008080; +} + +.hljs-regexp, +.hljs-link { + color: #b68; +} + +.hljs-symbol, +.hljs-bullet { + color: #990073; +} + +.hljs-built_in, +.hljs-builtin-name { + color: #0086b3; +} + +.hljs-meta { + color: #999; + font-weight: bold; +} + +.hljs-deletion { + background: #fdd; +} + +.hljs-addition { + background: #dfd; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/dracula.css b/static/iSkyLIMS_wetlab/css/styles/dracula.css new file mode 100644 index 0000000..d591db6 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/dracula.css @@ -0,0 +1,76 @@ +/* + +Dracula Theme v1.2.0 + +https://github.com/zenorocha/dracula-theme + +Copyright 2015, All rights reserved + +Code licensed under the MIT license +http://zenorocha.mit-license.org + +@author Éverton Ribeiro +@author Zeno Rocha + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #282a36; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-section, +.hljs-link { + color: #8be9fd; +} + +.hljs-function .hljs-keyword { + color: #ff79c6; +} + +.hljs, +.hljs-subst { + color: #f8f8f2; +} + +.hljs-string, +.hljs-title, +.hljs-name, +.hljs-type, +.hljs-attribute, +.hljs-symbol, +.hljs-bullet, +.hljs-addition, +.hljs-variable, +.hljs-template-tag, +.hljs-template-variable { + color: #f1fa8c; +} + +.hljs-comment, +.hljs-quote, +.hljs-deletion, +.hljs-meta { + color: #6272a4; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-title, +.hljs-section, +.hljs-doctag, +.hljs-type, +.hljs-name, +.hljs-strong { + font-weight: bold; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/far.css b/static/iSkyLIMS_wetlab/css/styles/far.css new file mode 100644 index 0000000..2b3f87b --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/far.css @@ -0,0 +1,71 @@ +/* + +FAR Style (c) MajestiC + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #000080; +} + +.hljs, +.hljs-subst { + color: #0ff; +} + +.hljs-string, +.hljs-attribute, +.hljs-symbol, +.hljs-bullet, +.hljs-built_in, +.hljs-builtin-name, +.hljs-template-tag, +.hljs-template-variable, +.hljs-addition { + color: #ff0; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-section, +.hljs-type, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-variable { + color: #fff; +} + +.hljs-comment, +.hljs-quote, +.hljs-doctag, +.hljs-deletion { + color: #888; +} + +.hljs-number, +.hljs-regexp, +.hljs-literal, +.hljs-link { + color: #0f0; +} + +.hljs-meta { + color: #008080; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-title, +.hljs-section, +.hljs-name, +.hljs-strong { + font-weight: bold; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/foundation.css b/static/iSkyLIMS_wetlab/css/styles/foundation.css new file mode 100644 index 0000000..f1fe64b --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/foundation.css @@ -0,0 +1,88 @@ +/* +Description: Foundation 4 docs style for highlight.js +Author: Dan Allen +Website: http://foundation.zurb.com/docs/ +Version: 1.0 +Date: 2013-04-02 +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #eee; color: black; +} + +.hljs-link, +.hljs-emphasis, +.hljs-attribute, +.hljs-addition { + color: #070; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong, +.hljs-string, +.hljs-deletion { + color: #d14; +} + +.hljs-strong { + font-weight: bold; +} + +.hljs-quote, +.hljs-comment { + color: #998; + font-style: italic; +} + +.hljs-section, +.hljs-title { + color: #900; +} + +.hljs-class .hljs-title, +.hljs-type { + color: #458; +} + +.hljs-variable, +.hljs-template-variable { + color: #336699; +} + +.hljs-bullet { + color: #997700; +} + +.hljs-meta { + color: #3344bb; +} + +.hljs-code, +.hljs-number, +.hljs-literal, +.hljs-keyword, +.hljs-selector-tag { + color: #099; +} + +.hljs-regexp { + background-color: #fff0ff; + color: #880088; +} + +.hljs-symbol { + color: #990073; +} + +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #007700; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/github-gist.css b/static/iSkyLIMS_wetlab/css/styles/github-gist.css new file mode 100644 index 0000000..155f0b9 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/github-gist.css @@ -0,0 +1,71 @@ +/** + * GitHub Gist Theme + * Author : Louis Barranqueiro - https://github.com/LouisBarranqueiro + */ + +.hljs { + display: block; + background: white; + padding: 0.5em; + color: #333333; + overflow-x: auto; +} + +.hljs-comment, +.hljs-meta { + color: #969896; +} + +.hljs-string, +.hljs-variable, +.hljs-template-variable, +.hljs-strong, +.hljs-emphasis, +.hljs-quote { + color: #df5000; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-type { + color: #a71d5d; +} + +.hljs-literal, +.hljs-symbol, +.hljs-bullet, +.hljs-attribute { + color: #0086b3; +} + +.hljs-section, +.hljs-name { + color: #63a35c; +} + +.hljs-tag { + color: #333333; +} + +.hljs-title, +.hljs-attr, +.hljs-selector-id, +.hljs-selector-class, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #795da3; +} + +.hljs-addition { + color: #55a532; + background-color: #eaffea; +} + +.hljs-deletion { + color: #bd2c00; + background-color: #ffecec; +} + +.hljs-link { + text-decoration: underline; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/github.css b/static/iSkyLIMS_wetlab/css/styles/github.css new file mode 100644 index 0000000..791932b --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/github.css @@ -0,0 +1,99 @@ +/* + +github.com style (c) Vasily Polovnyov + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + color: #333; + background: #f8f8f8; +} + +.hljs-comment, +.hljs-quote { + color: #998; + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-subst { + color: #333; + font-weight: bold; +} + +.hljs-number, +.hljs-literal, +.hljs-variable, +.hljs-template-variable, +.hljs-tag .hljs-attr { + color: #008080; +} + +.hljs-string, +.hljs-doctag { + color: #d14; +} + +.hljs-title, +.hljs-section, +.hljs-selector-id { + color: #900; + font-weight: bold; +} + +.hljs-subst { + font-weight: normal; +} + +.hljs-type, +.hljs-class .hljs-title { + color: #458; + font-weight: bold; +} + +.hljs-tag, +.hljs-name, +.hljs-attribute { + color: #000080; + font-weight: normal; +} + +.hljs-regexp, +.hljs-link { + color: #009926; +} + +.hljs-symbol, +.hljs-bullet { + color: #990073; +} + +.hljs-built_in, +.hljs-builtin-name { + color: #0086b3; +} + +.hljs-meta { + color: #999; + font-weight: bold; +} + +.hljs-deletion { + background: #fdd; +} + +.hljs-addition { + background: #dfd; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/gml.css b/static/iSkyLIMS_wetlab/css/styles/gml.css new file mode 100644 index 0000000..ffb5e47 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/gml.css @@ -0,0 +1,78 @@ +/* + +GML Theme - Meseta + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #222222; + color: #C0C0C0; +} + +.hljs-keywords { + color: #FFB871; + font-weight: bold; +} + +.hljs-built_in { + color: #FFB871; +} + +.hljs-literal { + color: #FF8080; +} + +.hljs-symbol { + color: #58E55A; +} + +.hljs-comment { + color: #5B995B; +} + +.hljs-string { + color: #FFFF00; +} + +.hljs-number { + color: #FF8080; +} + +.hljs-attribute, +.hljs-selector-tag, +.hljs-doctag, +.hljs-name, +.hljs-bullet, +.hljs-code, +.hljs-addition, +.hljs-regexp, +.hljs-variable, +.hljs-template-variable, +.hljs-link, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-type, +.hljs-selector-id, +.hljs-selector-class, +.hljs-quote, +.hljs-template-tag, +.hljs-deletion, +.hljs-title, +.hljs-section, +.hljs-function, +.hljs-meta-keyword, +.hljs-meta, +.hljs-subst { + color: #C0C0C0; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/googlecode.css b/static/iSkyLIMS_wetlab/css/styles/googlecode.css new file mode 100644 index 0000000..884ad63 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/googlecode.css @@ -0,0 +1,89 @@ +/* + +Google Code style (c) Aahan Krish + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: white; + color: black; +} + +.hljs-comment, +.hljs-quote { + color: #800; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-section, +.hljs-title, +.hljs-name { + color: #008; +} + +.hljs-variable, +.hljs-template-variable { + color: #660; +} + +.hljs-string, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-regexp { + color: #080; +} + +.hljs-literal, +.hljs-symbol, +.hljs-bullet, +.hljs-meta, +.hljs-number, +.hljs-link { + color: #066; +} + +.hljs-title, +.hljs-doctag, +.hljs-type, +.hljs-attr, +.hljs-built_in, +.hljs-builtin-name, +.hljs-params { + color: #606; +} + +.hljs-attribute, +.hljs-subst { + color: #000; +} + +.hljs-formula { + background-color: #eee; + font-style: italic; +} + +.hljs-selector-id, +.hljs-selector-class { + color: #9B703F +} + +.hljs-addition { + background-color: #baeeba; +} + +.hljs-deletion { + background-color: #ffc8bd; +} + +.hljs-doctag, +.hljs-strong { + font-weight: bold; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/grayscale.css b/static/iSkyLIMS_wetlab/css/styles/grayscale.css new file mode 100644 index 0000000..5376f34 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/grayscale.css @@ -0,0 +1,101 @@ +/* + +grayscale style (c) MY Sun + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + color: #333; + background: #fff; +} + +.hljs-comment, +.hljs-quote { + color: #777; + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-subst { + color: #333; + font-weight: bold; +} + +.hljs-number, +.hljs-literal { + color: #777; +} + +.hljs-string, +.hljs-doctag, +.hljs-formula { + color: #333; + background: url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAQAAAAECAYAAACp8Z5+AAAAJ0lEQVQIW2O8e/fufwYGBgZBQUEQxcCIIfDu3Tuwivfv30NUoAsAALHpFMMLqZlPAAAAAElFTkSuQmCC) repeat; +} + +.hljs-title, +.hljs-section, +.hljs-selector-id { + color: #000; + font-weight: bold; +} + +.hljs-subst { + font-weight: normal; +} + +.hljs-class .hljs-title, +.hljs-type, +.hljs-name { + color: #333; + font-weight: bold; +} + +.hljs-tag { + color: #333; +} + +.hljs-regexp { + color: #333; + background: url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAoAAAAICAYAAADA+m62AAAAPUlEQVQYV2NkQAN37979r6yszIgujiIAU4RNMVwhuiQ6H6wQl3XI4oy4FMHcCJPHcDS6J2A2EqUQpJhohQDexSef15DBCwAAAABJRU5ErkJggg==) repeat; +} + +.hljs-symbol, +.hljs-bullet, +.hljs-link { + color: #000; + background: url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAKElEQVQIW2NkQAO7d+/+z4gsBhJwdXVlhAvCBECKwIIwAbhKZBUwBQA6hBpm5efZsgAAAABJRU5ErkJggg==) repeat; +} + +.hljs-built_in, +.hljs-builtin-name { + color: #000; + text-decoration: underline; +} + +.hljs-meta { + color: #999; + font-weight: bold; +} + +.hljs-deletion { + color: #fff; + background:url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAADCAYAAABS3WWCAAAAE0lEQVQIW2MMDQ39zzhz5kwIAQAyxweWgUHd1AAAAABJRU5ErkJggg==) repeat; +} + +.hljs-addition { + color: #000; + background: url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAkAAAAJCAYAAADgkQYQAAAALUlEQVQYV2N89+7dfwYk8P79ewZBQUFkIQZGOiu6e/cuiptQHAPl0NtNxAQBAM97Oejj3Dg7AAAAAElFTkSuQmCC) repeat; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/gruvbox-dark.css b/static/iSkyLIMS_wetlab/css/styles/gruvbox-dark.css new file mode 100644 index 0000000..f563811 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/gruvbox-dark.css @@ -0,0 +1,108 @@ +/* + +Gruvbox style (dark) (c) Pavel Pertsev (original style at https://github.com/morhetz/gruvbox) + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #282828; +} + +.hljs, +.hljs-subst { + color: #ebdbb2; +} + +/* Gruvbox Red */ +.hljs-deletion, +.hljs-formula, +.hljs-keyword, +.hljs-link, +.hljs-selector-tag { + color: #fb4934; +} + +/* Gruvbox Blue */ +.hljs-built_in, +.hljs-emphasis, +.hljs-name, +.hljs-quote, +.hljs-strong, +.hljs-title, +.hljs-variable { + color: #83a598; +} + +/* Gruvbox Yellow */ +.hljs-attr, +.hljs-params, +.hljs-template-tag, +.hljs-type { + color: #fabd2f; +} + +/* Gruvbox Purple */ +.hljs-builtin-name, +.hljs-doctag, +.hljs-literal, +.hljs-number { + color: #8f3f71; +} + +/* Gruvbox Orange */ +.hljs-code, +.hljs-meta, +.hljs-regexp, +.hljs-selector-id, +.hljs-template-variable { + color: #fe8019; +} + +/* Gruvbox Green */ +.hljs-addition, +.hljs-meta-string, +.hljs-section, +.hljs-selector-attr, +.hljs-selector-class, +.hljs-string, +.hljs-symbol { + color: #b8bb26; +} + +/* Gruvbox Aqua */ +.hljs-attribute, +.hljs-bullet, +.hljs-class, +.hljs-function, +.hljs-function .hljs-keyword, +.hljs-meta-keyword, +.hljs-selector-pseudo, +.hljs-tag { + color: #8ec07c; +} + +/* Gruvbox Gray */ +.hljs-comment { + color: #928374; +} + +/* Gruvbox Purple */ +.hljs-link_label, +.hljs-literal, +.hljs-number { + color: #d3869b; +} + +.hljs-comment, +.hljs-emphasis { + font-style: italic; +} + +.hljs-section, +.hljs-strong, +.hljs-tag { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/gruvbox-light.css b/static/iSkyLIMS_wetlab/css/styles/gruvbox-light.css new file mode 100644 index 0000000..ff45468 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/gruvbox-light.css @@ -0,0 +1,108 @@ +/* + +Gruvbox style (light) (c) Pavel Pertsev (original style at https://github.com/morhetz/gruvbox) + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #fbf1c7; +} + +.hljs, +.hljs-subst { + color: #3c3836; +} + +/* Gruvbox Red */ +.hljs-deletion, +.hljs-formula, +.hljs-keyword, +.hljs-link, +.hljs-selector-tag { + color: #9d0006; +} + +/* Gruvbox Blue */ +.hljs-built_in, +.hljs-emphasis, +.hljs-name, +.hljs-quote, +.hljs-strong, +.hljs-title, +.hljs-variable { + color: #076678; +} + +/* Gruvbox Yellow */ +.hljs-attr, +.hljs-params, +.hljs-template-tag, +.hljs-type { + color: #b57614; +} + +/* Gruvbox Purple */ +.hljs-builtin-name, +.hljs-doctag, +.hljs-literal, +.hljs-number { + color: #8f3f71; +} + +/* Gruvbox Orange */ +.hljs-code, +.hljs-meta, +.hljs-regexp, +.hljs-selector-id, +.hljs-template-variable { + color: #af3a03; +} + +/* Gruvbox Green */ +.hljs-addition, +.hljs-meta-string, +.hljs-section, +.hljs-selector-attr, +.hljs-selector-class, +.hljs-string, +.hljs-symbol { + color: #79740e; +} + +/* Gruvbox Aqua */ +.hljs-attribute, +.hljs-bullet, +.hljs-class, +.hljs-function, +.hljs-function .hljs-keyword, +.hljs-meta-keyword, +.hljs-selector-pseudo, +.hljs-tag { + color: #427b58; +} + +/* Gruvbox Gray */ +.hljs-comment { + color: #928374; +} + +/* Gruvbox Purple */ +.hljs-link_label, +.hljs-literal, +.hljs-number { + color: #8f3f71; +} + +.hljs-comment, +.hljs-emphasis { + font-style: italic; +} + +.hljs-section, +.hljs-strong, +.hljs-tag { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/hopscotch.css b/static/iSkyLIMS_wetlab/css/styles/hopscotch.css new file mode 100644 index 0000000..32e60d2 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/hopscotch.css @@ -0,0 +1,83 @@ +/* + * Hopscotch + * by Jan T. Sott + * https://github.com/idleberg/Hopscotch + * + * This work is licensed under the Creative Commons CC0 1.0 Universal License + */ + +/* Comment */ +.hljs-comment, +.hljs-quote { + color: #989498; +} + +/* Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-attribute, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-link, +.hljs-deletion { + color: #dd464c; +} + +/* Orange */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params { + color: #fd8b19; +} + +/* Yellow */ +.hljs-class .hljs-title { + color: #fdcc59; +} + +/* Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #8fc13e; +} + +/* Aqua */ +.hljs-meta { + color: #149b93; +} + +/* Blue */ +.hljs-function, +.hljs-section, +.hljs-title { + color: #1290bf; +} + +/* Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #c85e7c; +} + +.hljs { + display: block; + background: #322931; + color: #b9b5b8; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/hybrid.css b/static/iSkyLIMS_wetlab/css/styles/hybrid.css new file mode 100644 index 0000000..29735a1 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/hybrid.css @@ -0,0 +1,102 @@ +/* + +vim-hybrid theme by w0ng (https://github.com/w0ng/vim-hybrid) + +*/ + +/*background color*/ +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #1d1f21; +} + +/*selection color*/ +.hljs::selection, +.hljs span::selection { + background: #373b41; +} + +.hljs::-moz-selection, +.hljs span::-moz-selection { + background: #373b41; +} + +/*foreground color*/ +.hljs { + color: #c5c8c6; +} + +/*color: fg_yellow*/ +.hljs-title, +.hljs-name { + color: #f0c674; +} + +/*color: fg_comment*/ +.hljs-comment, +.hljs-meta, +.hljs-meta .hljs-keyword { + color: #707880; +} + +/*color: fg_red*/ +.hljs-number, +.hljs-symbol, +.hljs-literal, +.hljs-deletion, +.hljs-link { + color: #cc6666 +} + +/*color: fg_green*/ +.hljs-string, +.hljs-doctag, +.hljs-addition, +.hljs-regexp, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #b5bd68; +} + +/*color: fg_purple*/ +.hljs-attribute, +.hljs-code, +.hljs-selector-id { + color: #b294bb; +} + +/*color: fg_blue*/ +.hljs-keyword, +.hljs-selector-tag, +.hljs-bullet, +.hljs-tag { + color: #81a2be; +} + +/*color: fg_aqua*/ +.hljs-subst, +.hljs-variable, +.hljs-template-tag, +.hljs-template-variable { + color: #8abeb7; +} + +/*color: fg_orange*/ +.hljs-type, +.hljs-built_in, +.hljs-builtin-name, +.hljs-quote, +.hljs-section, +.hljs-selector-class { + color: #de935f; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/idea.css b/static/iSkyLIMS_wetlab/css/styles/idea.css new file mode 100644 index 0000000..3bf1892 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/idea.css @@ -0,0 +1,97 @@ +/* + +Intellij Idea-like styling (c) Vasily Polovnyov + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + color: #000; + background: #fff; +} + +.hljs-subst, +.hljs-title { + font-weight: normal; + color: #000; +} + +.hljs-comment, +.hljs-quote { + color: #808080; + font-style: italic; +} + +.hljs-meta { + color: #808000; +} + +.hljs-tag { + background: #efefef; +} + +.hljs-section, +.hljs-name, +.hljs-literal, +.hljs-keyword, +.hljs-selector-tag, +.hljs-type, +.hljs-selector-id, +.hljs-selector-class { + font-weight: bold; + color: #000080; +} + +.hljs-attribute, +.hljs-number, +.hljs-regexp, +.hljs-link { + font-weight: bold; + color: #0000ff; +} + +.hljs-number, +.hljs-regexp, +.hljs-link { + font-weight: normal; +} + +.hljs-string { + color: #008000; + font-weight: bold; +} + +.hljs-symbol, +.hljs-bullet, +.hljs-formula { + color: #000; + background: #d0eded; + font-style: italic; +} + +.hljs-doctag { + text-decoration: underline; +} + +.hljs-variable, +.hljs-template-variable { + color: #660e7a; +} + +.hljs-addition { + background: #baeeba; +} + +.hljs-deletion { + background: #ffc8bd; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/ir-black.css b/static/iSkyLIMS_wetlab/css/styles/ir-black.css new file mode 100644 index 0000000..bd4c755 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/ir-black.css @@ -0,0 +1,73 @@ +/* + IR_Black style (c) Vasily Mikhailitchenko +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #000; + color: #f8f8f8; +} + +.hljs-comment, +.hljs-quote, +.hljs-meta { + color: #7c7c7c; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-tag, +.hljs-name { + color: #96cbfe; +} + +.hljs-attribute, +.hljs-selector-id { + color: #ffffb6; +} + +.hljs-string, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-addition { + color: #a8ff60; +} + +.hljs-subst { + color: #daefa3; +} + +.hljs-regexp, +.hljs-link { + color: #e9c062; +} + +.hljs-title, +.hljs-section, +.hljs-type, +.hljs-doctag { + color: #ffffb6; +} + +.hljs-symbol, +.hljs-bullet, +.hljs-variable, +.hljs-template-variable, +.hljs-literal { + color: #c6c5fe; +} + +.hljs-number, +.hljs-deletion { + color:#ff73fd; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/isbl-editor-dark.css b/static/iSkyLIMS_wetlab/css/styles/isbl-editor-dark.css new file mode 100644 index 0000000..2f1d95d --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/isbl-editor-dark.css @@ -0,0 +1,112 @@ +/* + +ISBL Editor style dark color scheme (c) Dmitriy Tarasov + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #404040; + color: #f0f0f0; +} + +/* Base color: saturation 0; */ + +.hljs, +.hljs-subst { + color: #f0f0f0; +} + +.hljs-comment { + color: #b5b5b5; + font-style: italic; +} + +.hljs-keyword, +.hljs-attribute, +.hljs-selector-tag, +.hljs-meta-keyword, +.hljs-doctag, +.hljs-name { + color: #f0f0f0; + font-weight: bold; +} + + +/* User color: hue: 0 */ + +.hljs-string { + color: #97bf0d; +} + +.hljs-type, +.hljs-number, +.hljs-selector-id, +.hljs-selector-class, +.hljs-quote, +.hljs-template-tag, +.hljs-deletion { + color: #f0f0f0; +} + +.hljs-title, +.hljs-section { + color: #df471e; +} + +.hljs-title>.hljs-built_in { + color: #81bce9; + font-weight: normal; +} + +.hljs-regexp, +.hljs-symbol, +.hljs-variable, +.hljs-template-variable, +.hljs-link, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #e2c696; +} + +/* Language color: hue: 90; */ + +.hljs-built_in, +.hljs-literal { + color: #97bf0d; + font-weight: bold; +} + +.hljs-bullet, +.hljs-code, +.hljs-addition { + color: #397300; +} + +.hljs-class { + color: #ce9d4d; + font-weight: bold; +} + +/* Meta color: hue: 200 */ + +.hljs-meta { + color: #1f7199; +} + +.hljs-meta-string { + color: #4d99bf; +} + + +/* Misc effects */ + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/isbl-editor-light.css b/static/iSkyLIMS_wetlab/css/styles/isbl-editor-light.css new file mode 100644 index 0000000..633070d --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/isbl-editor-light.css @@ -0,0 +1,112 @@ +/* + +ISBL Editor style light color schemec (c) Dmitriy Tarasov + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: white; + color: black; +} + +/* Base color: saturation 0; */ + +.hljs, +.hljs-subst { + color: #000000; +} + +.hljs-comment { + color: #555555; + font-style: italic; +} + +.hljs-keyword, +.hljs-attribute, +.hljs-selector-tag, +.hljs-meta-keyword, +.hljs-doctag, +.hljs-name { + color: #000000; + font-weight: bold; +} + + +/* User color: hue: 0 */ + +.hljs-string { + color: #000080; +} + +.hljs-type, +.hljs-number, +.hljs-selector-id, +.hljs-selector-class, +.hljs-quote, +.hljs-template-tag, +.hljs-deletion { + color: #000000; +} + +.hljs-title, +.hljs-section { + color: #fb2c00; +} + +.hljs-title>.hljs-built_in { + color: #008080; + font-weight: normal; +} + +.hljs-regexp, +.hljs-symbol, +.hljs-variable, +.hljs-template-variable, +.hljs-link, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #5e1700; +} + +/* Language color: hue: 90; */ + +.hljs-built_in, +.hljs-literal { + color: #000080; + font-weight: bold; +} + +.hljs-bullet, +.hljs-code, +.hljs-addition { + color: #397300; +} + +.hljs-class { + color: #6f1C00; + font-weight: bold; +} + +/* Meta color: hue: 200 */ + +.hljs-meta { + color: #1f7199; +} + +.hljs-meta-string { + color: #4d99bf; +} + + +/* Misc effects */ + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/kimbie.dark.css b/static/iSkyLIMS_wetlab/css/styles/kimbie.dark.css new file mode 100644 index 0000000..d139cb5 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/kimbie.dark.css @@ -0,0 +1,74 @@ +/* + Name: Kimbie (dark) + Author: Jan T. Sott + License: Creative Commons Attribution-ShareAlike 4.0 Unported License + URL: https://github.com/idleberg/Kimbie-highlight.js +*/ + +/* Kimbie Comment */ +.hljs-comment, +.hljs-quote { + color: #d6baad; +} + +/* Kimbie Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-meta { + color: #dc3958; +} + +/* Kimbie Orange */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params, +.hljs-deletion, +.hljs-link { + color: #f79a32; +} + +/* Kimbie Yellow */ +.hljs-title, +.hljs-section, +.hljs-attribute { + color: #f06431; +} + +/* Kimbie Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #889b4a; +} + +/* Kimbie Purple */ +.hljs-keyword, +.hljs-selector-tag, +.hljs-function { + color: #98676a; +} + +.hljs { + display: block; + overflow-x: auto; + background: #221a0f; + color: #d3af86; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/kimbie.light.css b/static/iSkyLIMS_wetlab/css/styles/kimbie.light.css new file mode 100644 index 0000000..04ff6ed --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/kimbie.light.css @@ -0,0 +1,74 @@ +/* + Name: Kimbie (light) + Author: Jan T. Sott + License: Creative Commons Attribution-ShareAlike 4.0 Unported License + URL: https://github.com/idleberg/Kimbie-highlight.js +*/ + +/* Kimbie Comment */ +.hljs-comment, +.hljs-quote { + color: #a57a4c; +} + +/* Kimbie Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-meta { + color: #dc3958; +} + +/* Kimbie Orange */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params, +.hljs-deletion, +.hljs-link { + color: #f79a32; +} + +/* Kimbie Yellow */ +.hljs-title, +.hljs-section, +.hljs-attribute { + color: #f06431; +} + +/* Kimbie Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #889b4a; +} + +/* Kimbie Purple */ +.hljs-keyword, +.hljs-selector-tag, +.hljs-function { + color: #98676a; +} + +.hljs { + display: block; + overflow-x: auto; + background: #fbebd4; + color: #84613d; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/lightfair.css b/static/iSkyLIMS_wetlab/css/styles/lightfair.css new file mode 100644 index 0000000..a247c8e --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/lightfair.css @@ -0,0 +1,87 @@ +/* + +Lightfair style (c) Tristian Kelly + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; +} + +.hljs-name { + color:#01a3a3; +} + +.hljs-tag,.hljs-meta { + color:#778899; +} + +.hljs, +.hljs-subst { + color: #444 +} + +.hljs-comment { + color: #888888 +} + +.hljs-keyword, +.hljs-attribute, +.hljs-selector-tag, +.hljs-meta-keyword, +.hljs-doctag, +.hljs-name { + font-weight: bold +} + +.hljs-type, +.hljs-string, +.hljs-number, +.hljs-selector-id, +.hljs-selector-class, +.hljs-quote, +.hljs-template-tag, +.hljs-deletion { + color: #4286f4 +} + +.hljs-title, +.hljs-section { + color: #4286f4; + font-weight: bold +} + +.hljs-regexp, +.hljs-symbol, +.hljs-variable, +.hljs-template-variable, +.hljs-link, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #BC6060 +} + +.hljs-literal { + color: #62bcbc +} + +.hljs-built_in, +.hljs-bullet, +.hljs-code, +.hljs-addition { + color: #25c6c6 +} + +.hljs-meta-string { + color: #4d99bf +} + +.hljs-emphasis { + font-style: italic +} + +.hljs-strong { + font-weight: bold +} diff --git a/static/iSkyLIMS_wetlab/css/styles/magula.css b/static/iSkyLIMS_wetlab/css/styles/magula.css new file mode 100644 index 0000000..44dee5e --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/magula.css @@ -0,0 +1,70 @@ +/* +Description: Magula style for highligh.js +Author: Ruslan Keba +Website: http://rukeba.com/ +Version: 1.0 +Date: 2009-01-03 +Music: Aphex Twin / Xtal +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background-color: #f4f4f4; +} + +.hljs, +.hljs-subst { + color: black; +} + +.hljs-string, +.hljs-title, +.hljs-symbol, +.hljs-bullet, +.hljs-attribute, +.hljs-addition, +.hljs-variable, +.hljs-template-tag, +.hljs-template-variable { + color: #050; +} + +.hljs-comment, +.hljs-quote { + color: #777; +} + +.hljs-number, +.hljs-regexp, +.hljs-literal, +.hljs-type, +.hljs-link { + color: #800; +} + +.hljs-deletion, +.hljs-meta { + color: #00e; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-doctag, +.hljs-title, +.hljs-section, +.hljs-built_in, +.hljs-tag, +.hljs-name { + font-weight: bold; + color: navy; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/mono-blue.css b/static/iSkyLIMS_wetlab/css/styles/mono-blue.css new file mode 100644 index 0000000..884c97c --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/mono-blue.css @@ -0,0 +1,59 @@ +/* + Five-color theme from a single blue hue. +*/ +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #eaeef3; +} + +.hljs { + color: #00193a; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-title, +.hljs-section, +.hljs-doctag, +.hljs-name, +.hljs-strong { + font-weight: bold; +} + +.hljs-comment { + color: #738191; +} + +.hljs-string, +.hljs-title, +.hljs-section, +.hljs-built_in, +.hljs-literal, +.hljs-type, +.hljs-addition, +.hljs-tag, +.hljs-quote, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #0048ab; +} + +.hljs-meta, +.hljs-subst, +.hljs-symbol, +.hljs-regexp, +.hljs-attribute, +.hljs-deletion, +.hljs-variable, +.hljs-template-variable, +.hljs-link, +.hljs-bullet { + color: #4c81c9; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/monokai-sublime.css b/static/iSkyLIMS_wetlab/css/styles/monokai-sublime.css new file mode 100644 index 0000000..2864170 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/monokai-sublime.css @@ -0,0 +1,83 @@ +/* + +Monokai Sublime style. Derived from Monokai by noformnocontent http://nn.mit-license.org/ + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #23241f; +} + +.hljs, +.hljs-tag, +.hljs-subst { + color: #f8f8f2; +} + +.hljs-strong, +.hljs-emphasis { + color: #a8a8a2; +} + +.hljs-bullet, +.hljs-quote, +.hljs-number, +.hljs-regexp, +.hljs-literal, +.hljs-link { + color: #ae81ff; +} + +.hljs-code, +.hljs-title, +.hljs-section, +.hljs-selector-class { + color: #a6e22e; +} + +.hljs-strong { + font-weight: bold; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-name, +.hljs-attr { + color: #f92672; +} + +.hljs-symbol, +.hljs-attribute { + color: #66d9ef; +} + +.hljs-params, +.hljs-class .hljs-title { + color: #f8f8f2; +} + +.hljs-string, +.hljs-type, +.hljs-built_in, +.hljs-builtin-name, +.hljs-selector-id, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-addition, +.hljs-variable, +.hljs-template-variable { + color: #e6db74; +} + +.hljs-comment, +.hljs-deletion, +.hljs-meta { + color: #75715e; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/monokai.css b/static/iSkyLIMS_wetlab/css/styles/monokai.css new file mode 100644 index 0000000..775d53f --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/monokai.css @@ -0,0 +1,70 @@ +/* +Monokai style - ported by Luigi Maselli - http://grigio.org +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #272822; color: #ddd; +} + +.hljs-tag, +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-strong, +.hljs-name { + color: #f92672; +} + +.hljs-code { + color: #66d9ef; +} + +.hljs-class .hljs-title { + color: white; +} + +.hljs-attribute, +.hljs-symbol, +.hljs-regexp, +.hljs-link { + color: #bf79db; +} + +.hljs-string, +.hljs-bullet, +.hljs-subst, +.hljs-title, +.hljs-section, +.hljs-emphasis, +.hljs-type, +.hljs-built_in, +.hljs-builtin-name, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-addition, +.hljs-variable, +.hljs-template-tag, +.hljs-template-variable { + color: #a6e22e; +} + +.hljs-comment, +.hljs-quote, +.hljs-deletion, +.hljs-meta { + color: #75715e; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-doctag, +.hljs-title, +.hljs-section, +.hljs-type, +.hljs-selector-id { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/nord.css b/static/iSkyLIMS_wetlab/css/styles/nord.css new file mode 100644 index 0000000..4240384 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/nord.css @@ -0,0 +1,309 @@ +/* + * Copyright (c) 2017-present Arctic Ice Studio + * Copyright (c) 2017-present Sven Greb + * + * Project: Nord highlight.js + * Version: 0.1.0 + * Repository: https://github.com/arcticicestudio/nord-highlightjs + * License: MIT + * References: + * https://github.com/arcticicestudio/nord + */ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #2E3440; +} + +.hljs, +.hljs-subst { + color: #D8DEE9; +} + +.hljs-selector-tag { + color: #81A1C1; +} + +.hljs-selector-id { + color: #8FBCBB; + font-weight: bold; +} + +.hljs-selector-class { + color: #8FBCBB; +} + +.hljs-selector-attr { + color: #8FBCBB; +} + +.hljs-selector-pseudo { + color: #88C0D0; +} + +.hljs-addition { + background-color: rgba(163, 190, 140, 0.5); +} + +.hljs-deletion { + background-color: rgba(191, 97, 106, 0.5); +} + +.hljs-built_in, +.hljs-type { + color: #8FBCBB; +} + +.hljs-class { + color: #8FBCBB; +} + +.hljs-function { + color: #88C0D0; +} + +.hljs-function > .hljs-title { + color: #88C0D0; +} + +.hljs-keyword, +.hljs-literal, +.hljs-symbol { + color: #81A1C1; +} + +.hljs-number { + color: #B48EAD; +} + +.hljs-regexp { + color: #EBCB8B; +} + +.hljs-string { + color: #A3BE8C; +} + +.hljs-title { + color: #8FBCBB; +} + +.hljs-params { + color: #D8DEE9; +} + +.hljs-bullet { + color: #81A1C1; +} + +.hljs-code { + color: #8FBCBB; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-formula { + color: #8FBCBB; +} + +.hljs-strong { + font-weight: bold; +} + +.hljs-link:hover { + text-decoration: underline; +} + +.hljs-quote { + color: #4C566A; +} + +.hljs-comment { + color: #4C566A; +} + +.hljs-doctag { + color: #8FBCBB; +} + +.hljs-meta, +.hljs-meta-keyword { + color: #5E81AC; +} + +.hljs-meta-string { + color: #A3BE8C; +} + +.hljs-attr { + color: #8FBCBB; +} + +.hljs-attribute { + color: #D8DEE9; +} + +.hljs-builtin-name { + color: #81A1C1; +} + +.hljs-name { + color: #81A1C1; +} + +.hljs-section { + color: #88C0D0; +} + +.hljs-tag { + color: #81A1C1; +} + +.hljs-variable { + color: #D8DEE9; +} + +.hljs-template-variable { + color: #D8DEE9; +} + +.hljs-template-tag { + color: #5E81AC; +} + +.abnf .hljs-attribute { + color: #88C0D0; +} + +.abnf .hljs-symbol { + color: #EBCB8B; +} + +.apache .hljs-attribute { + color: #88C0D0; +} + +.apache .hljs-section { + color: #81A1C1; +} + +.arduino .hljs-built_in { + color: #88C0D0; +} + +.aspectj .hljs-meta { + color: #D08770; +} + +.aspectj > .hljs-title { + color: #88C0D0; +} + +.bnf .hljs-attribute { + color: #8FBCBB; +} + +.clojure .hljs-name { + color: #88C0D0; +} + +.clojure .hljs-symbol { + color: #EBCB8B; +} + +.coq .hljs-built_in { + color: #88C0D0; +} + +.cpp .hljs-meta-string { + color: #8FBCBB; +} + +.css .hljs-built_in { + color: #88C0D0; +} + +.css .hljs-keyword { + color: #D08770; +} + +.diff .hljs-meta { + color: #8FBCBB; +} + +.ebnf .hljs-attribute { + color: #8FBCBB; +} + +.glsl .hljs-built_in { + color: #88C0D0; +} + +.groovy .hljs-meta:not(:first-child) { + color: #D08770; +} + +.haxe .hljs-meta { + color: #D08770; +} + +.java .hljs-meta { + color: #D08770; +} + +.ldif .hljs-attribute { + color: #8FBCBB; +} + +.lisp .hljs-name { + color: #88C0D0; +} + +.lua .hljs-built_in { + color: #88C0D0; +} + +.moonscript .hljs-built_in { + color: #88C0D0; +} + +.nginx .hljs-attribute { + color: #88C0D0; +} + +.nginx .hljs-section { + color: #5E81AC; +} + +.pf .hljs-built_in { + color: #88C0D0; +} + +.processing .hljs-built_in { + color: #88C0D0; +} + +.scss .hljs-keyword { + color: #81A1C1; +} + +.stylus .hljs-keyword { + color: #81A1C1; +} + +.swift .hljs-meta { + color: #D08770; +} + +.vim .hljs-built_in { + color: #88C0D0; + font-style: italic; +} + +.yaml .hljs-meta { + color: #D08770; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/obsidian.css b/static/iSkyLIMS_wetlab/css/styles/obsidian.css new file mode 100644 index 0000000..356630f --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/obsidian.css @@ -0,0 +1,88 @@ +/** + * Obsidian style + * ported by Alexander Marenin (http://github.com/ioncreature) + */ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #282b2e; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-selector-id { + color: #93c763; +} + +.hljs-number { + color: #ffcd22; +} + +.hljs { + color: #e0e2e4; +} + +.hljs-attribute { + color: #668bb0; +} + +.hljs-code, +.hljs-class .hljs-title, +.hljs-section { + color: white; +} + +.hljs-regexp, +.hljs-link { + color: #d39745; +} + +.hljs-meta { + color: #557182; +} + +.hljs-tag, +.hljs-name, +.hljs-bullet, +.hljs-subst, +.hljs-emphasis, +.hljs-type, +.hljs-built_in, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-addition, +.hljs-variable, +.hljs-template-tag, +.hljs-template-variable { + color: #8cbbad; +} + +.hljs-string, +.hljs-symbol { + color: #ec7600; +} + +.hljs-comment, +.hljs-quote, +.hljs-deletion { + color: #818e96; +} + +.hljs-selector-class { + color: #A082BD +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-doctag, +.hljs-title, +.hljs-section, +.hljs-type, +.hljs-name, +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/ocean.css b/static/iSkyLIMS_wetlab/css/styles/ocean.css new file mode 100644 index 0000000..5901581 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/ocean.css @@ -0,0 +1,74 @@ +/* Ocean Dark Theme */ +/* https://github.com/gavsiu */ +/* Original theme - https://github.com/chriskempson/base16 */ + +/* Ocean Comment */ +.hljs-comment, +.hljs-quote { + color: #65737e; +} + +/* Ocean Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-deletion { + color: #bf616a; +} + +/* Ocean Orange */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params, +.hljs-meta, +.hljs-link { + color: #d08770; +} + +/* Ocean Yellow */ +.hljs-attribute { + color: #ebcb8b; +} + +/* Ocean Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #a3be8c; +} + +/* Ocean Blue */ +.hljs-title, +.hljs-section { + color: #8fa1b3; +} + +/* Ocean Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #b48ead; +} + +.hljs { + display: block; + overflow-x: auto; + background: #2b303b; + color: #c0c5ce; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/paraiso-dark.css b/static/iSkyLIMS_wetlab/css/styles/paraiso-dark.css new file mode 100644 index 0000000..e729240 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/paraiso-dark.css @@ -0,0 +1,72 @@ +/* + Paraíso (dark) + Created by Jan T. Sott (http://github.com/idleberg) + Inspired by the art of Rubens LP (http://www.rubenslp.com.br) +*/ + +/* Paraíso Comment */ +.hljs-comment, +.hljs-quote { + color: #8d8687; +} + +/* Paraíso Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-link, +.hljs-meta { + color: #ef6155; +} + +/* Paraíso Orange */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params, +.hljs-deletion { + color: #f99b15; +} + +/* Paraíso Yellow */ +.hljs-title, +.hljs-section, +.hljs-attribute { + color: #fec418; +} + +/* Paraíso Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #48b685; +} + +/* Paraíso Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #815ba4; +} + +.hljs { + display: block; + overflow-x: auto; + background: #2f1e2e; + color: #a39e9b; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/paraiso-light.css b/static/iSkyLIMS_wetlab/css/styles/paraiso-light.css new file mode 100644 index 0000000..944857c --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/paraiso-light.css @@ -0,0 +1,72 @@ +/* + Paraíso (light) + Created by Jan T. Sott (http://github.com/idleberg) + Inspired by the art of Rubens LP (http://www.rubenslp.com.br) +*/ + +/* Paraíso Comment */ +.hljs-comment, +.hljs-quote { + color: #776e71; +} + +/* Paraíso Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-link, +.hljs-meta { + color: #ef6155; +} + +/* Paraíso Orange */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params, +.hljs-deletion { + color: #f99b15; +} + +/* Paraíso Yellow */ +.hljs-title, +.hljs-section, +.hljs-attribute { + color: #fec418; +} + +/* Paraíso Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #48b685; +} + +/* Paraíso Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #815ba4; +} + +.hljs { + display: block; + overflow-x: auto; + background: #e7e9db; + color: #4f424c; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/pojoaque.css b/static/iSkyLIMS_wetlab/css/styles/pojoaque.css new file mode 100644 index 0000000..2e07847 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/pojoaque.css @@ -0,0 +1,83 @@ +/* + +Pojoaque Style by Jason Tate +http://web-cms-designs.com/ftopict-10-pojoaque-style-for-highlight-js-code-highlighter.html +Based on Solarized Style from http://ethanschoonover.com/solarized + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + color: #dccf8f; + background: url(./pojoaque.jpg) repeat scroll left top #181914; +} + +.hljs-comment, +.hljs-quote { + color: #586e75; + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-addition { + color: #b64926; +} + +.hljs-number, +.hljs-string, +.hljs-doctag, +.hljs-regexp { + color: #468966; +} + +.hljs-title, +.hljs-section, +.hljs-built_in, +.hljs-name { + color: #ffb03b; +} + +.hljs-variable, +.hljs-template-variable, +.hljs-class .hljs-title, +.hljs-type, +.hljs-tag { + color: #b58900; +} + +.hljs-attribute { + color: #b89859; +} + +.hljs-symbol, +.hljs-bullet, +.hljs-link, +.hljs-subst, +.hljs-meta { + color: #cb4b16; +} + +.hljs-deletion { + color: #dc322f; +} + +.hljs-selector-id, +.hljs-selector-class { + color: #d3a60c; +} + +.hljs-formula { + background: #073642; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/pojoaque.jpg b/static/iSkyLIMS_wetlab/css/styles/pojoaque.jpg new file mode 100644 index 0000000000000000000000000000000000000000..9c07d4ab40b6d77e90ff69f0012bcd33b21d31c3 GIT binary patch literal 1186 zcmZXSe^8Tk9LK-kXFs3)f@f?)Cddzw3v4wdZyXQ;4x3=;Ja*N#%n9ik!UGmt9H3k0 zJST|5jOc(ID$FQt3C?jQZBws#kXolO1lg9Pba9BB=Q+UEBX!nY@6Uhl&+ofe$Q$y5 z@ci`~)&qzDP(lOiQ5p?p z(`j^e7!yUAVHk%K#^GQXn?s0=VLYCI$HRoe=xCuZ>A6A3@sxEP#XqNFpIb=0)KQ#Nss_tD17;m4@$JKL;LR|K|QF3f%!L5+s(9Ft8SQ zG|~pGpEGFW5Z|OA)-O@mNHy-g@7m8JTf?kl@vUKBGmw)Y*9sDRNr3PN!IKefWaydTe1D zjzpyzPnD3}hBNaS4aFX7=0&~I*Hu7#4au@qVBglH#-m;QFOx_`=j z{EqRY#Eh*yoWP^pa4H>8GH{rO?!_+xwL0(k4yL^D%^nBkJ*UI;Lx;ped8d|f*S_s@ z3~ilcRC(&NT#9Gn#UD;o^EYSMXDMf%XcUi3>;WXXD-QX3P9wMyP7eA&RS{)h5{??W3^Rq=goFJ>?lA~J- zdYe>!xvYLW*fPT0RK7wsJRg^?x#W1*GP9_f`6t>QD_X>0d!owyN>nO2?U5}|3?hX_UZYT@^>S!9eB~bZ9U`q;`U)@L670o1g z`Hd}h<_WRvUc|n*%v4Hbb-4tJD40iyF^q%g*&!6>hkYDvi-{Uc4yTM zzcthN4Z{ka!+F_KzYV#yWi;c^X^q6g`pD8cp?$Kl?hCz0s^a|mH%P!CF%*<6k^~i` zT5Mi-t5-frUcHkk^Qh}+N)Kz1&Bi95`oNc|quI>tUi~BY>xcF9(%tv2i{G6kE9*q~ qCoAGl20`)w0rdgp9H%Q=M5|p`hOhFz6$I%Y&ncY8>c?7PXyh+SL&XXJ literal 0 HcmV?d00001 diff --git a/static/iSkyLIMS_wetlab/css/styles/purebasic.css b/static/iSkyLIMS_wetlab/css/styles/purebasic.css new file mode 100644 index 0000000..5ce9b9e --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/purebasic.css @@ -0,0 +1,96 @@ +/* + +PureBASIC native IDE style ( version 1.0 - April 2016 ) + +by Tristano Ajmone + +Public Domain + +NOTE_1: PureBASIC code syntax highlighting only applies the following classes: + .hljs-comment + .hljs-function + .hljs-keywords + .hljs-string + .hljs-symbol + + Other classes are added here for the benefit of styling other languages with the look and feel of PureBASIC native IDE style. + If you need to customize a stylesheet for PureBASIC only, remove all non-relevant classes -- PureBASIC-related classes are followed by + a "--- used for PureBASIC ... ---" comment on same line. + +NOTE_2: Color names provided in comments were derived using "Name that Color" online tool: + http://chir.ag/projects/name-that-color +*/ + +.hljs { /* Common set of rules required by highlight.js (don'r remove!) */ + display: block; + overflow-x: auto; + padding: 0.5em; + background: #FFFFDF; /* Half and Half (approx.) */ +/* --- Uncomment to add PureBASIC native IDE styled font! + font-family: Consolas; +*/ +} + +.hljs, /* --- used for PureBASIC base color --- */ +.hljs-type, /* --- used for PureBASIC Procedures return type --- */ +.hljs-function, /* --- used for wrapping PureBASIC Procedures definitions --- */ +.hljs-name, +.hljs-number, +.hljs-attr, +.hljs-params, +.hljs-subst { + color: #000000; /* Black */ +} + +.hljs-comment, /* --- used for PureBASIC Comments --- */ +.hljs-regexp, +.hljs-section, +.hljs-selector-pseudo, +.hljs-addition { + color: #00AAAA; /* Persian Green (approx.) */ +} + +.hljs-title, /* --- used for PureBASIC Procedures Names --- */ +.hljs-tag, +.hljs-variable, +.hljs-code { + color: #006666; /* Blue Stone (approx.) */ +} + +.hljs-keyword, /* --- used for PureBASIC Keywords --- */ +.hljs-class, +.hljs-meta-keyword, +.hljs-selector-class, +.hljs-built_in, +.hljs-builtin-name { + color: #006666; /* Blue Stone (approx.) */ + font-weight: bold; +} + +.hljs-string, /* --- used for PureBASIC Strings --- */ +.hljs-selector-attr { + color: #0080FF; /* Azure Radiance (approx.) */ +} + +.hljs-symbol, /* --- used for PureBASIC Constants --- */ +.hljs-link, +.hljs-deletion, +.hljs-attribute { + color: #924B72; /* Cannon Pink (approx.) */ +} + +.hljs-meta, +.hljs-literal, +.hljs-selector-id { + color: #924B72; /* Cannon Pink (approx.) */ + font-weight: bold; +} + +.hljs-strong, +.hljs-name { + font-weight: bold; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/qtcreator_dark.css b/static/iSkyLIMS_wetlab/css/styles/qtcreator_dark.css new file mode 100644 index 0000000..7aa56a3 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/qtcreator_dark.css @@ -0,0 +1,83 @@ +/* + +Qt Creator dark color scheme + +*/ + + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #000000; +} + +.hljs, +.hljs-subst, +.hljs-tag, +.hljs-title { + color: #aaaaaa; +} + +.hljs-strong, +.hljs-emphasis { + color: #a8a8a2; +} + +.hljs-bullet, +.hljs-quote, +.hljs-number, +.hljs-regexp, +.hljs-literal { + color: #ff55ff; +} + +.hljs-code +.hljs-selector-class { + color: #aaaaff; +} + +.hljs-emphasis, +.hljs-stronge, +.hljs-type { + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-function, +.hljs-section, +.hljs-symbol, +.hljs-name { + color: #ffff55; +} + +.hljs-attribute { + color: #ff5555; +} + +.hljs-variable, +.hljs-params, +.hljs-class .hljs-title { + color: #8888ff; +} + +.hljs-string, +.hljs-selector-id, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-type, +.hljs-built_in, +.hljs-builtin-name, +.hljs-template-tag, +.hljs-template-variable, +.hljs-addition, +.hljs-link { + color: #ff55ff; +} + +.hljs-comment, +.hljs-meta, +.hljs-deletion { + color: #55ffff; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/qtcreator_light.css b/static/iSkyLIMS_wetlab/css/styles/qtcreator_light.css new file mode 100644 index 0000000..1efa2c6 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/qtcreator_light.css @@ -0,0 +1,83 @@ +/* + +Qt Creator light color scheme + +*/ + + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #ffffff; +} + +.hljs, +.hljs-subst, +.hljs-tag, +.hljs-title { + color: #000000; +} + +.hljs-strong, +.hljs-emphasis { + color: #000000; +} + +.hljs-bullet, +.hljs-quote, +.hljs-number, +.hljs-regexp, +.hljs-literal { + color: #000080; +} + +.hljs-code +.hljs-selector-class { + color: #800080; +} + +.hljs-emphasis, +.hljs-stronge, +.hljs-type { + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-function, +.hljs-section, +.hljs-symbol, +.hljs-name { + color: #808000; +} + +.hljs-attribute { + color: #800000; +} + +.hljs-variable, +.hljs-params, +.hljs-class .hljs-title { + color: #0055AF; +} + +.hljs-string, +.hljs-selector-id, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-type, +.hljs-built_in, +.hljs-builtin-name, +.hljs-template-tag, +.hljs-template-variable, +.hljs-addition, +.hljs-link { + color: #008000; +} + +.hljs-comment, +.hljs-meta, +.hljs-deletion { + color: #008000; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/railscasts.css b/static/iSkyLIMS_wetlab/css/styles/railscasts.css new file mode 100644 index 0000000..008cdc5 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/railscasts.css @@ -0,0 +1,106 @@ +/* + +Railscasts-like style (c) Visoft, Inc. (Damien White) + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #232323; + color: #e6e1dc; +} + +.hljs-comment, +.hljs-quote { + color: #bc9458; + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag { + color: #c26230; +} + +.hljs-string, +.hljs-number, +.hljs-regexp, +.hljs-variable, +.hljs-template-variable { + color: #a5c261; +} + +.hljs-subst { + color: #519f50; +} + +.hljs-tag, +.hljs-name { + color: #e8bf6a; +} + +.hljs-type { + color: #da4939; +} + + +.hljs-symbol, +.hljs-bullet, +.hljs-built_in, +.hljs-builtin-name, +.hljs-attr, +.hljs-link { + color: #6d9cbe; +} + +.hljs-params { + color: #d0d0ff; +} + +.hljs-attribute { + color: #cda869; +} + +.hljs-meta { + color: #9b859d; +} + +.hljs-title, +.hljs-section { + color: #ffc66d; +} + +.hljs-addition { + background-color: #144212; + color: #e6e1dc; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #600; + color: #e6e1dc; + display: inline-block; + width: 100%; +} + +.hljs-selector-class { + color: #9b703f; +} + +.hljs-selector-id { + color: #8b98ab; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} + +.hljs-link { + text-decoration: underline; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/rainbow.css b/static/iSkyLIMS_wetlab/css/styles/rainbow.css new file mode 100644 index 0000000..905eb8e --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/rainbow.css @@ -0,0 +1,85 @@ +/* + +Style with support for rainbow parens + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #474949; + color: #d1d9e1; +} + + +.hljs-comment, +.hljs-quote { + color: #969896; + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-type, +.hljs-addition { + color: #cc99cc; +} + +.hljs-number, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #f99157; +} + +.hljs-string, +.hljs-doctag, +.hljs-regexp { + color: #8abeb7; +} + +.hljs-title, +.hljs-name, +.hljs-section, +.hljs-built_in { + color: #b5bd68; +} + +.hljs-variable, +.hljs-template-variable, +.hljs-selector-id, +.hljs-class .hljs-title { + color: #ffcc66; +} + +.hljs-section, +.hljs-name, +.hljs-strong { + font-weight: bold; +} + +.hljs-symbol, +.hljs-bullet, +.hljs-subst, +.hljs-meta, +.hljs-link { + color: #f99157; +} + +.hljs-deletion { + color: #dc322f; +} + +.hljs-formula { + background: #eee8d5; +} + +.hljs-attr, +.hljs-attribute { + color: #81a2be; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/routeros.css b/static/iSkyLIMS_wetlab/css/styles/routeros.css new file mode 100644 index 0000000..ebe2399 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/routeros.css @@ -0,0 +1,108 @@ +/* + + highlight.js style for Microtik RouterOS script + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #F0F0F0; +} + +/* Base color: saturation 0; */ + +.hljs, +.hljs-subst { + color: #444; +} + +.hljs-comment { + color: #888888; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-meta-keyword, +.hljs-doctag, +.hljs-name { + font-weight: bold; +} + +.hljs-attribute { + color: #0E9A00; +} + +.hljs-function { + color: #99069A; +} + +.hljs-builtin-name { + color: #99069A; +} + +/* User color: hue: 0 */ + +.hljs-type, +.hljs-string, +.hljs-number, +.hljs-selector-id, +.hljs-selector-class, +.hljs-quote, +.hljs-template-tag, +.hljs-deletion { + color: #880000; +} + +.hljs-title, +.hljs-section { + color: #880000; + font-weight: bold; +} + +.hljs-regexp, +.hljs-symbol, +.hljs-variable, +.hljs-template-variable, +.hljs-link, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #BC6060; +} + + +/* Language color: hue: 90; */ + +.hljs-literal { + color: #78A960; +} + +.hljs-built_in, +.hljs-bullet, +.hljs-code, +.hljs-addition { + color: #0C9A9A; +} + + +/* Meta color: hue: 200 */ + +.hljs-meta { + color: #1f7199; +} + +.hljs-meta-string { + color: #4d99bf; +} + + +/* Misc effects */ + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/school-book.css b/static/iSkyLIMS_wetlab/css/styles/school-book.css new file mode 100644 index 0000000..964b51d --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/school-book.css @@ -0,0 +1,72 @@ +/* + +School Book style from goldblog.com.ua (c) Zaripov Yura + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 15px 0.5em 0.5em 30px; + font-size: 11px; + line-height:16px; +} + +pre{ + background:#f6f6ae url(./school-book.png); + border-top: solid 2px #d2e8b9; + border-bottom: solid 1px #d2e8b9; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal { + color:#005599; + font-weight:bold; +} + +.hljs, +.hljs-subst { + color: #3e5915; +} + +.hljs-string, +.hljs-title, +.hljs-section, +.hljs-type, +.hljs-symbol, +.hljs-bullet, +.hljs-attribute, +.hljs-built_in, +.hljs-builtin-name, +.hljs-addition, +.hljs-variable, +.hljs-template-tag, 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a/static/iSkyLIMS_wetlab/css/styles/shades-of-purple.css b/static/iSkyLIMS_wetlab/css/styles/shades-of-purple.css new file mode 100644 index 0000000..c0e899e --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/shades-of-purple.css @@ -0,0 +1,97 @@ +/** + * Shades of Purple Theme — for Highlightjs. + * + * @author (c) Ahmad Awais + * @link GitHub Repo → https://github.com/ahmadawais/Shades-of-Purple-HighlightJS + * @version 1.5.0 + */ + +.hljs { + display: block; + overflow-x: auto; + /* Custom font is optional */ + /* font-family: 'Operator Mono', 'Fira Code', 'Menlo', 'Monaco', 'Courier New', 'monospace'; */ + line-height: 1.45; + padding: 2rem; + background: #2d2b57; + font-weight: normal; +} + +.hljs-title { + color: #fad000; + font-weight: normal; +} + +.hljs-name { + color: #a1feff; +} + +.hljs-tag { + color: #ffffff; +} + +.hljs-attr { + color: #f8d000; + font-style: italic; +} + +.hljs-built_in, +.hljs-selector-tag, +.hljs-section { + color: #fb9e00; +} + +.hljs-keyword { + color: #fb9e00; +} + +.hljs, +.hljs-subst { + color: #e3dfff; +} + +.hljs-string, +.hljs-attribute, +.hljs-symbol, +.hljs-bullet, +.hljs-addition, +.hljs-code, +.hljs-regexp, +.hljs-selector-class, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-template-tag, +.hljs-quote, +.hljs-deletion { + color: #4cd213; +} + +.hljs-meta, +.hljs-meta-string { + color: #fb9e00; +} + +.hljs-comment { + color: #ac65ff; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-literal, +.hljs-name, +.hljs-strong { + font-weight: normal; +} + +.hljs-literal, +.hljs-number { + color: #fa658d; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/solarized-dark.css b/static/iSkyLIMS_wetlab/css/styles/solarized-dark.css new file mode 100644 index 0000000..b4c0da1 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/solarized-dark.css @@ -0,0 +1,84 @@ +/* + +Orginal Style from ethanschoonover.com/solarized (c) Jeremy Hull + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #002b36; + color: #839496; +} + +.hljs-comment, +.hljs-quote { + color: #586e75; +} + +/* Solarized Green */ +.hljs-keyword, +.hljs-selector-tag, +.hljs-addition { + color: #859900; +} + +/* Solarized Cyan */ +.hljs-number, +.hljs-string, +.hljs-meta .hljs-meta-string, +.hljs-literal, +.hljs-doctag, +.hljs-regexp { + color: #2aa198; +} + +/* Solarized Blue */ +.hljs-title, +.hljs-section, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #268bd2; +} + +/* Solarized Yellow */ +.hljs-attribute, +.hljs-attr, +.hljs-variable, +.hljs-template-variable, +.hljs-class .hljs-title, +.hljs-type { + color: #b58900; +} + +/* Solarized Orange */ +.hljs-symbol, +.hljs-bullet, +.hljs-subst, +.hljs-meta, +.hljs-meta .hljs-keyword, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-link { + color: #cb4b16; +} + +/* Solarized Red */ +.hljs-built_in, +.hljs-deletion { + color: #dc322f; +} + +.hljs-formula { + background: #073642; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/solarized-light.css b/static/iSkyLIMS_wetlab/css/styles/solarized-light.css new file mode 100644 index 0000000..fdcfcc7 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/solarized-light.css @@ -0,0 +1,84 @@ +/* + +Orginal Style from ethanschoonover.com/solarized (c) Jeremy Hull + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #fdf6e3; + color: #657b83; +} + +.hljs-comment, +.hljs-quote { + color: #93a1a1; +} + +/* Solarized Green */ +.hljs-keyword, +.hljs-selector-tag, +.hljs-addition { + color: #859900; +} + +/* Solarized Cyan */ +.hljs-number, +.hljs-string, +.hljs-meta .hljs-meta-string, +.hljs-literal, +.hljs-doctag, +.hljs-regexp { + color: #2aa198; +} + +/* Solarized Blue */ +.hljs-title, +.hljs-section, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class { + color: #268bd2; +} + +/* Solarized Yellow */ +.hljs-attribute, +.hljs-attr, +.hljs-variable, +.hljs-template-variable, +.hljs-class .hljs-title, +.hljs-type { + color: #b58900; +} + +/* Solarized Orange */ +.hljs-symbol, +.hljs-bullet, +.hljs-subst, +.hljs-meta, +.hljs-meta .hljs-keyword, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-link { + color: #cb4b16; +} + +/* Solarized Red */ +.hljs-built_in, +.hljs-deletion { + color: #dc322f; +} + +.hljs-formula { + background: #eee8d5; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/sunburst.css b/static/iSkyLIMS_wetlab/css/styles/sunburst.css new file mode 100644 index 0000000..f56dd5e --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/sunburst.css @@ -0,0 +1,102 @@ +/* + +Sunburst-like style (c) Vasily Polovnyov + +*/ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #000; + color: #f8f8f8; +} + +.hljs-comment, +.hljs-quote { + color: #aeaeae; + font-style: italic; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-type { + color: #e28964; +} + +.hljs-string { + color: #65b042; +} + +.hljs-subst { + color: #daefa3; +} + +.hljs-regexp, +.hljs-link { + color: #e9c062; +} + +.hljs-title, +.hljs-section, +.hljs-tag, +.hljs-name { + color: #89bdff; +} + +.hljs-class .hljs-title, +.hljs-doctag { + text-decoration: underline; +} + +.hljs-symbol, +.hljs-bullet, +.hljs-number { + color: #3387cc; +} + +.hljs-params, +.hljs-variable, +.hljs-template-variable { + color: #3e87e3; +} + +.hljs-attribute { + color: #cda869; +} + +.hljs-meta { + color: #8996a8; +} + +.hljs-formula { + background-color: #0e2231; + color: #f8f8f8; + font-style: italic; +} + +.hljs-addition { + background-color: #253b22; + color: #f8f8f8; +} + +.hljs-deletion { + background-color: #420e09; + color: #f8f8f8; +} + +.hljs-selector-class { + color: #9b703f; +} + +.hljs-selector-id { + color: #8b98ab; +} + +.hljs-emphasis { + font-style: italic; +} + 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Tomorrow Yellow */ +.hljs-attribute { + color: #ffeead; +} + +/* Tomorrow Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #d1f1a9; +} + +/* Tomorrow Blue */ +.hljs-title, +.hljs-section { + color: #bbdaff; +} + +/* Tomorrow Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #ebbbff; +} + +.hljs { + display: block; + overflow-x: auto; + background: #002451; + color: white; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/tomorrow-night-bright.css b/static/iSkyLIMS_wetlab/css/styles/tomorrow-night-bright.css new file mode 100644 index 0000000..e05af8a --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/tomorrow-night-bright.css @@ -0,0 +1,74 @@ +/* Tomorrow Night Bright Theme */ +/* Original theme - https://github.com/chriskempson/tomorrow-theme */ +/* http://jmblog.github.com/color-themes-for-google-code-highlightjs */ + +/* Tomorrow Comment */ +.hljs-comment, +.hljs-quote { + color: #969896; +} + +/* Tomorrow Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-deletion { + color: #d54e53; +} + +/* Tomorrow Orange */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params, +.hljs-meta, +.hljs-link { + color: #e78c45; +} + +/* Tomorrow Yellow */ +.hljs-attribute { + color: #e7c547; +} + +/* Tomorrow Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #b9ca4a; +} + +/* Tomorrow Blue */ +.hljs-title, +.hljs-section { + color: #7aa6da; +} + +/* Tomorrow Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #c397d8; +} + +.hljs { + display: block; + overflow-x: auto; + background: black; + color: #eaeaea; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git 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+.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #99cc99; +} + +/* Tomorrow Blue */ +.hljs-title, +.hljs-section { + color: #6699cc; +} + +/* Tomorrow Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #cc99cc; +} + +.hljs { + display: block; + overflow-x: auto; + background: #2d2d2d; + color: #cccccc; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/tomorrow-night.css b/static/iSkyLIMS_wetlab/css/styles/tomorrow-night.css new file mode 100644 index 0000000..ddd270a --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/tomorrow-night.css @@ -0,0 +1,75 @@ +/* Tomorrow Night Theme */ +/* http://jmblog.github.com/color-themes-for-google-code-highlightjs */ +/* Original theme - https://github.com/chriskempson/tomorrow-theme */ +/* http://jmblog.github.com/color-themes-for-google-code-highlightjs */ + +/* Tomorrow Comment */ +.hljs-comment, +.hljs-quote { + color: #969896; +} + +/* Tomorrow Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-deletion { + color: #cc6666; +} + +/* Tomorrow Orange */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params, +.hljs-meta, +.hljs-link { + color: #de935f; +} + +/* Tomorrow Yellow */ +.hljs-attribute { + color: #f0c674; +} + +/* Tomorrow Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #b5bd68; +} + +/* Tomorrow Blue */ +.hljs-title, +.hljs-section { + color: #81a2be; +} + +/* Tomorrow Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #b294bb; +} + +.hljs { + display: block; + overflow-x: auto; + background: #1d1f21; + color: #c5c8c6; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/tomorrow.css b/static/iSkyLIMS_wetlab/css/styles/tomorrow.css new file mode 100644 index 0000000..026a62f --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/tomorrow.css @@ -0,0 +1,72 @@ +/* http://jmblog.github.com/color-themes-for-google-code-highlightjs */ + +/* Tomorrow Comment */ +.hljs-comment, +.hljs-quote { + color: #8e908c; +} + +/* Tomorrow Red */ +.hljs-variable, +.hljs-template-variable, +.hljs-tag, +.hljs-name, +.hljs-selector-id, +.hljs-selector-class, +.hljs-regexp, +.hljs-deletion { + color: #c82829; +} + +/* Tomorrow Orange */ +.hljs-number, +.hljs-built_in, +.hljs-builtin-name, +.hljs-literal, +.hljs-type, +.hljs-params, +.hljs-meta, +.hljs-link { + color: #f5871f; +} + +/* Tomorrow Yellow */ +.hljs-attribute { + color: #eab700; +} + +/* Tomorrow Green */ +.hljs-string, +.hljs-symbol, +.hljs-bullet, +.hljs-addition { + color: #718c00; +} + +/* Tomorrow Blue */ +.hljs-title, +.hljs-section { + color: #4271ae; +} + +/* Tomorrow Purple */ +.hljs-keyword, +.hljs-selector-tag { + color: #8959a8; +} + +.hljs { + display: block; + overflow-x: auto; + background: white; + color: #4d4d4c; + padding: 0.5em; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/vs.css b/static/iSkyLIMS_wetlab/css/styles/vs.css new file mode 100644 index 0000000..c5d07d3 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/vs.css @@ -0,0 +1,68 @@ +/* + +Visual Studio-like style based on original C# coloring by Jason Diamond + +*/ +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: white; + color: black; +} + +.hljs-comment, +.hljs-quote, +.hljs-variable { + color: #008000; +} + +.hljs-keyword, +.hljs-selector-tag, +.hljs-built_in, +.hljs-name, +.hljs-tag { + color: #00f; +} + +.hljs-string, +.hljs-title, +.hljs-section, +.hljs-attribute, +.hljs-literal, +.hljs-template-tag, +.hljs-template-variable, +.hljs-type, +.hljs-addition { + color: #a31515; +} + +.hljs-deletion, +.hljs-selector-attr, +.hljs-selector-pseudo, +.hljs-meta { + color: #2b91af; +} + +.hljs-doctag { + color: #808080; +} + +.hljs-attr { + color: #f00; +} + +.hljs-symbol, +.hljs-bullet, +.hljs-link { + color: #00b0e8; +} + + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/vs2015.css b/static/iSkyLIMS_wetlab/css/styles/vs2015.css new file mode 100644 index 0000000..d1d9be3 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/vs2015.css @@ -0,0 +1,115 @@ +/* + * Visual Studio 2015 dark style + * Author: Nicolas LLOBERA + */ + +.hljs { + display: block; + overflow-x: auto; + padding: 0.5em; + background: #1E1E1E; + color: #DCDCDC; +} + +.hljs-keyword, +.hljs-literal, +.hljs-symbol, +.hljs-name { + color: #569CD6; +} +.hljs-link { + color: #569CD6; + text-decoration: underline; +} + +.hljs-built_in, +.hljs-type { + color: #4EC9B0; +} + +.hljs-number, +.hljs-class { + color: #B8D7A3; +} + +.hljs-string, +.hljs-meta-string { + color: #D69D85; +} + +.hljs-regexp, +.hljs-template-tag { + color: #9A5334; +} + +.hljs-subst, +.hljs-function, +.hljs-title, +.hljs-params, +.hljs-formula { + color: #DCDCDC; +} + +.hljs-comment, +.hljs-quote { + color: #57A64A; + font-style: italic; +} + +.hljs-doctag { + color: #608B4E; +} + +.hljs-meta, +.hljs-meta-keyword, +.hljs-tag { + color: #9B9B9B; +} + +.hljs-variable, +.hljs-template-variable { + color: #BD63C5; +} + +.hljs-attr, +.hljs-attribute, +.hljs-builtin-name { + color: #9CDCFE; +} + +.hljs-section { + color: gold; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} + +/*.hljs-code { + font-family:'Monospace'; +}*/ + +.hljs-bullet, +.hljs-selector-tag, +.hljs-selector-id, +.hljs-selector-class, +.hljs-selector-attr, +.hljs-selector-pseudo { + color: #D7BA7D; +} + +.hljs-addition { + background-color: #144212; + display: inline-block; + width: 100%; +} + +.hljs-deletion { + background-color: #600; + display: inline-block; + width: 100%; +} diff --git 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+.hljs-built_in, +.hljs-builtin-name, +.hljs-params { + color: #5c2699; +} + +.hljs-attr { + color: #836C28; +} + +.hljs-subst { + color: #000; +} + +.hljs-formula { + background-color: #eee; + font-style: italic; +} + +.hljs-addition { + background-color: #baeeba; +} + +.hljs-deletion { + background-color: #ffc8bd; +} + +.hljs-selector-id, +.hljs-selector-class { + color: #9b703f; +} + +.hljs-doctag, +.hljs-strong { + font-weight: bold; +} + +.hljs-emphasis { + font-style: italic; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/xt256.css b/static/iSkyLIMS_wetlab/css/styles/xt256.css new file mode 100644 index 0000000..3e35ad2 --- /dev/null +++ b/static/iSkyLIMS_wetlab/css/styles/xt256.css @@ -0,0 +1,92 @@ + +/* + xt256.css + + Contact: initbar [at] protonmail [dot] ch + : github.com/initbar +*/ + +.hljs { + display: block; + overflow-x: auto; + color: #eaeaea; + background: #000; + padding: 0.5em; +} + +.hljs-subst { + color: #eaeaea; +} + +.hljs-emphasis { + font-style: italic; +} + +.hljs-strong { + font-weight: bold; +} + +.hljs-builtin-name, +.hljs-type { + color: #eaeaea; +} + +.hljs-params { + color: #da0000; +} + +.hljs-literal, +.hljs-number, +.hljs-name { + color: #ff0000; + font-weight: bolder; +} + +.hljs-comment { + color: #969896; +} + +.hljs-selector-id, +.hljs-quote { + color: #00ffff; +} + +.hljs-template-variable, +.hljs-variable, +.hljs-title { + color: #00ffff; + font-weight: bold; +} + +.hljs-selector-class, +.hljs-keyword, +.hljs-symbol { + color: #fff000; +} + +.hljs-string, +.hljs-bullet { + color: #00ff00; +} + +.hljs-tag, +.hljs-section { + color: #000fff; +} + +.hljs-selector-tag { + color: #000fff; + font-weight: bold; +} + +.hljs-attribute, +.hljs-built_in, +.hljs-regexp, +.hljs-link { + color: #ff00ff; +} + +.hljs-meta { + color: #fff; + font-weight: bolder; +} diff --git a/static/iSkyLIMS_wetlab/css/styles/zenburn.css b/static/iSkyLIMS_wetlab/css/styles/zenburn.css new file mode 100644 index 0000000..07be502 --- /dev/null +++ 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+
+
+

Wetlab configuration testing results

+
+
+
+ +
+
+
+

Wetlab configuration settings + {% if test_results.config_file %} + + {% else %} + + {% endif %} +

+
+
+
+ {% if test_results.config_file %} + + 

+{% for line in test_results.config_file %}
+    {{ line }}
+{% endfor %}
+
+ {% else %} +

Unable to fetch the configuration file

+ {% endif %} +
+
+
+
+
+
+ + +
+
+
+

Wetlab folders/files permisions + {% if test_results.attr_files %} + + {% else %} + + {% endif %} +

+
+
+
+ {% if test_results.attr_files %} + {% for line in test_results.attr_files %} +

{{ line }}

+ {% endfor %} + {% else %} +

Unable to fetch the permision files

+ {% endif %} +
+
+
+ +
+
+
+ +
+
+
+

Database access + {% if test_results.database_access %} + + {% else %} + + {% endif %} +

+
+
+
+ {% if test_results.database_access %} +

Success to connect to database

+ {% else %} +

Unable to connect to database

+ {% endif %} +
+
+
+ +
+
+
+ +
+
+
+

Samba connection + {% if test_results.samba_connection %} + + {% else %} + + {% endif %} +

+
+
+
+ {% if test_results.samba_connection %} +

Success to connect via Samba

+ {% else %} +

Unable to connect via Samba

+ {% endif %} +
+
+
+ +
+
+
+ + + {% if test_results.basic_checks_ok or runNextSeq_results.basic_checks_ok or runMiSeq_results.basic_checks_ok %} +
+
+
+

Execute the test Run

+
+
+

Once the basic check test has been pass, you can execute the testing for NexSeq run

+
+ {% csrf_token %} + +
+ +
+
+
+
+
+

Once the basic check test has been pass, you can execute the testing for MiSeq run

+
+ {% csrf_token %} + +
+ +
+
+
+
+
+
+ {% endif %} + +{% elif runNextSeq_results %} +
+
+
+

Results execution for NextSeq test Run + {% if runNextSeq_results.completed_ok %} + + {% else %} + + {% endif %} +

+
+

Check below for the test performed for every state of the Run

+
+
+
+
+ +
+
+
+

Specific Test Cases for NextSeq Run

+
+
+
+

2. - Test Executed to create NextSeq Run + {% if runNextSeq_results.create_run_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runNextSeq_results.CreateRun %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+ + {%if runNextSeq_results.Recorded %} +
+

1. - Test Executed on Recorded state + {% if runNextSeq_results.recorded_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runNextSeq_results.Recorded %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+ {% endif %} +
+ +
+ {%if runNextSeq_results.Sample_Sent %} +
+

2. - Test Executed on Sample Sent state + {% if runNextSeq_results.sample_sent_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runNextSeq_results.Sample_Sent %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+ {%endif %} + {% if unNextSeq_results.Processing_Run %} +
+

3. - Test Executed on Processing Run + {% if runNextSeq_results.processing_run_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runNextSeq_results.Processing_Run %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+ {% endif %} +
+
+
+
+
+ + +
+
+

Common Test Cases for Runs

+
+
+
+

4. - Test Executed on Processed Run state + {% if runNextSeq_results.processed_run_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runNextSeq_results.Processed_Run %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+ +
+

5. - Test Executed on Processing Bcl2fastq state + {% if runNextSeq_results.processing_bcl2fastq_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runNextSeq_results.Processing_Bcl2fastq %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+
+ +
+
+

6. - Test Executed on Processed Bcl2fastq + {% if runNextSeq_results.processed_bcl2fast2_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runNextSeq_results.Processed_Bcl2fastq %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+
+
+
+
+ + + + + {% if log_trace %} +
+
+
+

Log file for MiSeq test

+
+ +
+ {% if log_trace %} + {% for line in log_trace %} +

{{ line }}

+ {% endfor %} + {% else %} +

Unable to fetch the log file

+ {% endif %} +
+
+
+
+
+ + {% endif %} + +
+
+
+

Test Options

+
+

Click on the "Re-Run NextSeq test" button . if you want to repeat the test

+
+ {% csrf_token %} + +
+ + + +
+
+
+
+
+ + + + + + + + + + + + + +{% elif runMiSeq_results %} +
+
+
+

Results execution for MiSeq test Run + {% if runMiSeq_results.completed_ok %} + + {% else %} + + {% endif %} +

+
+

Check below for the test performed for every state of the Run

+
+
+
+
+ +
+
+
+

Specific Test Cases for MiSeq Runs

+
+
+
+

1. - Test Executed on Recorded state + {% if runMiSeq_results.recorded_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runMiSeq_results.Recorded %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+
+ +
+
+

2. - Test Executed on Sample Sent state + {% if runMiSeq_results.sample_sent_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runMiSeq_results.Sample_Sent %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+ +
+

3. - Test Executed on Processing Run + {% if runMiSeq_results.processing_run_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runMiSeq_results.Processing_Run %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+
+
+
+
+
+ + +
+
+

Common Test Cases for Runs

+
+
+
+

4. - Test Executed on Processed Run state + {% if runMiSeq_results.processed_run_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runMiSeq_results.Processed_Run %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+ +
+

5. - Test Executed on Processing Bcl2fastq state + {% if runMiSeq_results.processing_bcl2fastq_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runMiSeq_results.Processing_Bcl2fastq %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+
+ +
+
+

6. - Test Executed on Processed Bcl2fastq + {% if runMiSeq_results.processed_bcl2fast2_ok %} + + {% else %} + + {% endif %} +

+
+ {% for test_case, result in runMiSeq_results.Processed_Bcl2fastq %} +

{{ test_case }} + {% if result == 'OK' %} + + {% else %} + + {% endif %} +

+ {% endfor %} +
+
+
+
+
+
+ + + + + {% if log_trace %} +
+
+
+

Log file for MiSeq test

+
+ +
+ {% if log_trace %} + {% for line in log_trace %} +

{{ line }}

+ {% endfor %} + {% else %} +

Unable to fetch the log file

+ {% endif %} +
+
+
+
+
+ + {% endif %} + +
+
+
+

Test Options

+
+

Click on the "Re-Run MiSeq test" button . if you want to repeat the test

+
+ {% csrf_token %} + +
+ + + +
+
+
+
+
+ + + +{% else %} + + +
+
+
+

Page for starting wetlab configuration testing

+
+
+ {% csrf_token %} + +
+

This is the test page to check the configuration settings defined in your installation.

+

The tests are divided into several parts to cover the run life, from recorded until the run is completed.

+
    +
  • Basic test cases. Where testing:
    • +
      +
    • Configuration files accesibility.
      • +
    • Samba connection to remote server
      • +
    • Database access
      • +
      +
    +
  • NextSeq run. Using a predefined NestSeq test run:
    • +
      +
    • Creation of the run in recorded state
      • +
    • Updating the run from recorded until completed
      • +
      + +
    +
  • NMiSeq run. Using a predefined MiSeq test run:
    • +
      +
    • Fetch the sample sheet to create the run in recorded state
      • +
    • Updating the run from recorded until completed
      • +
    +
+

Click on the "SUBMIT" button to start the testing

+
+ + +
+
+
+
+
+{% endif %} +{% endblock %} diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/logging_test_config.ini b/tests/logging_test_config.ini new file mode 100644 index 0000000..dd73e30 --- /dev/null +++ b/tests/logging_test_config.ini @@ -0,0 +1,20 @@ +[loggers] +keys=root + +[handlers] +keys=logfile + +[formatters] +keys=logfileformatter + +[logger_root] +level=DEBUG +handlers=logfile + +[formatter_logfileformatter] +format=%(asctime)s %(funcName)-12s %(levelname)-8s %(lineno)s %(message)s + +[handler_logfile] +class=handlers.RotatingFileHandler +args=('/srv/iSkyLIMS/logs/test_wetlab.log','a',500000,5) +formatter=logfileformatter diff --git a/urls.py b/urls.py index 651a4ee..d1ea66a 100644 --- a/urls.py +++ b/urls.py @@ -10,35 +10,34 @@ urlpatterns = [ path('',views.index, name = 'index'), + path('AddLibraryKit/',views.add_library_kit, name='add_library_kit'), + path('AddIndexLibrary', views.add_index_library, name = 'add_index_library'), + path('AnnualReport/',views.annual_report, name='annual_report'), + path('change_project_libKit=',views.change_project_libKit, name ='change_project_libKit'), + path('change_run_libKit=',views.change_run_libKit, name ='change_run_libKit'), + path('ChangeRunName=',views.change_run_name, name='change_run_name'), path('createNextSeqRun/', views.create_nextseq_run, name='create_nextseq_run'), + path('configurationTest/', views.configuration_test, name='configuration_test'), + path('DisplayIndexLibrary=/', views.display_index_library, name= 'display_index_library'), + path('displayProject=/', views.display_project, name='display_project'), + path('displayRun=/', views.display_run, name='display_run'), + path('displaySample=/', views.display_sample, name= 'display_sample'), path('latest_run/',views.latest_run, name='latest_run'), path('incompletedRuns', views.incompleted_runs, name = 'incompleted_runs'), - path('searchRun/', views.search_run, name='search_run'), - path('displayRun=/', views.display_run, name='display_run'), + path('MonthlyReport/', views.monthly_report, name='montly_report'), + path('QuarterReport/', views.quarter_report, name='quarter_report'), + path('register_wetlab/',views.register_wetlab, name='register_wetlab'), + path('searchIndexLibrary', views.search_index_library, name='search_index_library'), path('searchProject/', views.search_project, name ='search_project'), + path('searchRun/', views.search_run, name='search_run'), path('searchSample/', views.search_sample, name = 'search_sample'), - path('displayProject=/', views.display_project, name='display_project'), - path('displaySample=/', views.display_sample, name= 'display_sample'), path('StatsExperiment/', views.stats_experiment, name ='stats_experiment'), + path('StatsLibrary/', views.stats_per_library , name ='stats_per_library'), path('StatsPerResearcher/',views.stats_per_researcher, name='stats_per_researcher'), path('StatsPerTime/', views.stats_per_time, name ='stats_per_time'), - path('StatsLibrary/', views.stats_per_library , name ='stats_per_library'), - path('AnnualReport/',views.annual_report, name='annual_report'), - path('MonthlyReport/', views.monthly_report, name='montly_report'), - path('QuarterReport/', views.quarter_report, name='quarter_report'), path('updateTables/',views.update_tables, name='update_tables'), path('updateTablesDate/',views.update_tables_date, name='update_tables_date'), - path('register_wetlab/',views.register_wetlab, name='register_wetlab'), - path('change_project_libKit=',views.change_project_libKit, name ='change_project_libKit'), - path('change_run_libKit=',views.change_run_libKit, name ='change_run_libKit'), - path('ChangeRunName=',views.change_run_name, name='change_run_name'), - path('AddLibraryKit/',views.add_library_kit, name='add_library_kit'), - path('AddIndexLibrary', views.add_index_library, name = 'add_index_library'), - path('DisplayIndexLibrary=/', views.display_index_library, name= 'display_index_library'), - path('searchIndexLibrary', views.search_index_library, name='search_index_library'), - - - + ] #+ static(settings.STATIC_URL, document_root=settings.STATIC_ROOT) diff --git a/utils/common_run_functions.py b/utils/common_run_functions.py index 2453952..bfd2bad 100644 --- a/utils/common_run_functions.py +++ b/utils/common_run_functions.py @@ -969,7 +969,7 @@ def manage_run_in_processed_run (conn, run_object_name): def manage_run_in_processing_bcl2fastq (conn, run_object_name): ''' Description: - The function will check if report floder exists. Then the bcl2fastq + The function will check if report folder exists. Then the bcl2fastq conversion is completed If exists the run state will move to Processed Bcl2fastq Input: diff --git a/utils/generic_functions.py b/utils/generic_functions.py index 398034a..bf3da4b 100644 --- a/utils/generic_functions.py +++ b/utils/generic_functions.py @@ -252,6 +252,26 @@ def get_experiment_name_from_file (l_run_parameter) : return experiment_name +def get_log_file_name(config_log_file) : + ''' + Description: + The function will get the log file name from the configuration + file and it will return the fullpath log file name + Input: + config_log_file # configuration log file + Variables: + log_file_name # name of found log file name + Return: + log_file_name + ''' + log_file_name = '' + with open(config_log_file) as fh : + for line in fh : + if '.log' in line : + log_file_name = line.split('\'')[1] + return log_file_name + + def get_run_platform_from_file (l_run_parameter) : ''' Description: @@ -416,7 +436,7 @@ def need_to_wait_more (experiment_name, waiting_time): logger.debug ('End function need_to_wait_sample_sheet') return True -def open_log(): +def open_log(config_file): ''' Description: The function will create the log object to write all logging information @@ -428,7 +448,6 @@ def open_log(): Return: logger object ''' - config_file = os.path.join(settings.BASE_DIR,'iSkyLIMS_wetlab', wetlab_config.LOGGING_CONFIG_FILE ) fileConfig(config_file) logger = logging.getLogger(__name__) return logger @@ -449,8 +468,10 @@ def open_samba_connection(): use_ntlm_v2=wetlab_config.SAMBA_NTLM_USED,domain=wetlab_config.SAMBA_DOMAIN, is_direct_tcp=wetlab_config.IS_DIRECT_TCP ) try: - conn.connect(socket.gethostbyname(wetlab_config.SAMBA_HOST_NAME), int(wetlab_config.SAMBA_PORT_SERVER)) - #conn.connect(wetlab_config.SAMBA_IP_SERVER, int(wetlab_config.SAMBA_PORT_SERVER)) + if wetlab_config.SAMBA_HOST_NAME : + conn.connect(socket.gethostbyname(wetlab_config.SAMBA_HOST_NAME), int(wetlab_config.SAMBA_PORT_SERVER)) + else: + conn.connect(wetlab_config.SAMBA_IP_SERVER, int(wetlab_config.SAMBA_PORT_SERVER)) except: string_message = 'Unable to connect to remote server' logging_errors (string_message, True, True) diff --git a/utils/miseq_run_functions.py b/utils/miseq_run_functions.py index 6b1f7a6..83eaf35 100644 --- a/utils/miseq_run_functions.py +++ b/utils/miseq_run_functions.py @@ -87,7 +87,7 @@ def get_latest_miseq_log(conn, log_folder) : file_content ''' logger = logging.getLogger(__name__) - logger.debug ('Starting function for fetching remote file') + logger.debug ('Starting function get_latest_miseq_log') remote_file_list = conn.listPath( wetlab_config.SAMBA_SHARED_FOLDER_NAME, log_folder) max_cycle = -1 for sfh in remote_file_list: @@ -104,12 +104,14 @@ def get_latest_miseq_log(conn, log_folder) : temporary_log = os.path.join(wetlab_config.RUN_TEMP_DIRECTORY,'miseq_cycle.log') s_latest_log = os.path.join(log_folder,latest_log) + #with open(temporary_log ,'wb') as log_fp : temporary_log = fetch_remote_file (conn, log_folder, s_latest_log, temporary_log) with open (temporary_log, 'r') as fh : log_file_content = fh.read() os.remove(temporary_log) + logger.debug ('End function get_latest_miseq_log') return max_cycle, log_file_content @@ -443,7 +445,7 @@ def validate_sample_sheet (sample_sheet): logger.debug('End the function validate sample_sheet with error') return False if Projects.objects.filter(projectName__exact = project).exists(): - string_message = 'project name %s , already been used ' + project + string_message = 'project name "' + project + '" already been used ' logging_errors(string_message, False, False) logger.debug('Exiting the function validate sample_sheet with error') return False @@ -572,7 +574,7 @@ def handle_miseq_run (conn, new_run, l_run_parameter, experiment_name) : Input: conn # samba connection object new_run # folder remote directory for miseq run - l_run-parameter # local path for the run parameter file + l_run_parameter # local path for the run parameter file experiment_name # name used on miseq run Functions: get_projects_in_run # located at utils.sample_sheet_utils diff --git a/utils/testing_wetlab_configuration.py b/utils/testing_wetlab_configuration.py new file mode 100644 index 0000000..ca6871d --- /dev/null +++ b/utils/testing_wetlab_configuration.py @@ -0,0 +1,561 @@ +from django.contrib.auth.models import User +from django.conf import settings +import pwd, stat, os, grp, shutil +import logging + +#from pathlib import Path +from iSkyLIMS_wetlab.models import * +from iSkyLIMS_wetlab.wetlab_config import * +from iSkyLIMS_wetlab.utils.generic_functions import * +from iSkyLIMS_wetlab.utils.update_run_state import handle_miseq_run +from iSkyLIMS_wetlab.utils.miseq_run_functions import * +from iSkyLIMS_wetlab.utils.common_run_functions import manage_run_in_processed_run, manage_run_in_processing_bcl2fastq, manage_run_in_processed_bcl2fastq +from iSkyLIMS_wetlab.utils.sample_sheet_utils import * + +def get_config_file (config_file): + c_file = [] + try: + with open (config_file ,'r') as fh: + for line in fh: + if 'PASSWORD' in line: + hide_passwd = line.split('=') + hide_passwd[1] = 'XXXXXXXXXXXXXXXXX' + line = ' = '.join(hide_passwd) + line = line.replace('\n', '') + c_file.append(line) + except: + return + return c_file + +def get_files_attribute (directory): + attr_files = [] + ''' + #try: + for entry in os.scandir(directory): + attr_files.append([oct(os.stat(entry).st_mode)[-3:], + pwd.getpwuid(entry.stat().st_uid).pw_name, + grp.getgrgid(entry.stat().st_gid).gr_name, + entry.name]) + import pdb; pdb.set_trace() + ''' + try: + for (dirpath, dirnames, filenames) in os.walk(directory, topdown=True): + for d in dirnames: + for entry in os.scandir(directory): + attr_files.append([oct(os.stat(entry).st_mode)[-3:], + pwd.getpwuid(entry.stat().st_uid).pw_name, + grp.getgrgid(entry.stat().st_gid).gr_name, + os.path.join(dirpath, entry.name)]) + except: + return + return attr_files + +def check_access_database (): + try: + runs = RunProcess.objects.all() + return True + except: + return + +def check_samba_connection() : + try: + open_samba_connection() + return True + except : + return + + + +def run_exists_in_db (run_name): + + if RunProcess.objects.filter(runName__exact = run_name).exists() : + return True + else: + return False + +def delete_graphic_folder_if_exists(run_name): + run_object = RunProcess.objects.get(runName__exact = run_name) + if RunningParameters.objects.filter(runName_id = RunProcess.objects.get(runName__exact = run_name)).exists() : + #import pdb; pdb.set_trace() + folder_graphic = RunningParameters.objects.get(runName_id = RunProcess.objects.get(runName__exact = run_name)).get_run_folder() + if os.path.isdir(os.path.join(settings.MEDIA_ROOT,'wetlab', 'images_plot', folder_graphic)) : + shutil.rmtree(os.path.join(settings.MEDIA_ROOT,'wetlab', 'images_plot', folder_graphic)) + return True + +def delete_run_in_db (run_name): + + if RunProcess.objects.filter(runName__exact = run_name).exists() : + delete_run = RunProcess.objects.get(runName = run_name) + sample_sheet_file = delete_run.get_sample_file() + if sample_sheet_file != '' : + full_path_sample_sheet_file = os.path.join(settings.MEDIA_ROOT, sample_sheet_file) + os.remove(full_path_sample_sheet_file) + delete_run.delete() + return True + +def delete_test_run (run_name) : + if run_exists_in_db(run_name): + delete_graphic_folder_if_exists(run_name) + delete_run_in_db(run_name) + return True + +def folder_run_exists (conn, folder_run_name): + + try: + run_folder_list = conn.listPath( wetlab_config.SAMBA_SHARED_FOLDER_NAME, run_data_root_folder) + except : + raise + + return conn + +def create_project (p_name, run_name, bs_file): + #import pdb; pdb.set_trace() + n_project = Projects( runprocess_id = RunProcess.objects.get(runName__exact = run_name), + LibraryKit_id = LibraryKit.objects.get(libraryName__exact = 'Nextera XT Index Kit v2 Set B'), + projectName = p_name , libraryKit='Nextera XT V2 ', baseSpaceFile = bs_file, + user_id = User.objects.get(username__exact = 'Test_user1')) + n_project.save() + + + return True + +def create_run_test_nextseq_in_recorded (run_folder, experiment_name ) : + recorded_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function create_run_test_nextseq') + # if run exist, then delete if before created it again + if RunProcess.objects.filter(runName__exact = experiment_name).exists() : + run_name = RunProcess.objects.get(runName__exact = experiment_name) + sample_sheet = run_name.get_sample_file() + temp_folder_sample_sheet = run_name.get_run_id() + try: + os.remove(os.path.join(wetlab_config.RUN_SAMPLE_SHEET_DIRECTORY, sample_sheet)) + except: + logger.info('unable to delete sample sheet') + try: + shutil.rmtree(os.path.join(settings.MEDIA_ROOT, wetlab_config.RUN_TEMP_DIRECTORY_RECORDED, temp_folder_sample_sheet)) + except: + logger.info('unable to delete tmp forlder with the smample sheet') + + delete_test_run(experiment_name) + + conn = open_samba_connection() + + l_sample = os.path.join(wetlab_config.RUN_TEMP_DIRECTORY,wetlab_config.SAMPLE_SHEET) + s_sample= os.path.join(run_folder, wetlab_config.SAMPLE_SHEET) + + try: + l_sample = fetch_remote_file (conn, run_folder, s_sample, l_sample) + logger.info('Sucessfully fetch of Sample Sheet file') + except Exception as ex: + string_message = 'Unable to fetch the Sample Sheet file' + logging_errors(string_message, False, True) + recorded_results.append((str(ex) , 'NOK')) + return recorded_results, 'NOK' + projects = get_projects_in_run(l_sample) + recorded_results.append(('Successful creation Run in database', 'OK')) + + center_requested_by = Center.objects.get(pk = 2) + run_process = RunProcess(runName=experiment_name,sampleSheet= '', + state = RunStates.objects.get(runStateName__exact = 'Recorded'), + index_library = 'Nextera XT', centerRequestedBy = center_requested_by) + run_process.save() + + run_process_id = run_process.get_run_id() + dir_to_store_sample_sheet = os.path.join(settings.MEDIA_ROOT, wetlab_config.RUN_TEMP_DIRECTORY_RECORDED, run_process_id) + os.makedirs(dir_to_store_sample_sheet) + shutil.copyfile(l_sample, os.path.join(dir_to_store_sample_sheet, 'samplesheet.csv')) + + recorded_results.append(('Successful copy of Sample Sheet to temporary folder', 'OK')) + + new_sample_sheet_name = store_sample_sheet_in_run (l_sample, experiment_name ) + recorded_results.append(('Successful update of Sample Sheet in database', 'OK')) + + new_sample_sheet_file = os.path.join (settings.MEDIA_ROOT, wetlab_config.RUN_SAMPLE_SHEET_DIRECTORY, new_sample_sheet_name) + bs_file = run_process.get_sample_file() + # create projects in DDBB + for project in projects : + create_project(project, experiment_name, bs_file) + recorded_results.append(('Successful projects creation in database', 'OK')) + + return recorded_results, 'OK' + + +def run_nextseq_test_rec_to_sample_sent (run_folder, experiment_name) : + + # check if test folder exists + run_data_root_folder = os.path.join('/', wetlab_config.SAMBA_APPLICATION_FOLDER_NAME , run_folder) + try: + run_folder_list = conn.listPath( wetlab_config.SAMBA_SHARED_FOLDER_NAME, run_data_root_folder) + recorded_results.append(('Check if test Run folder exists ', 'OK')) + logger.info('Test Run folder exists on remote server') + except Exception as ex : + string_message = 'Test run folder does not exists ' + logging_errors(string_message, False, True) + recorded_results.append((str(ex) , 'NOK')) + logger.debug ('End function create_run_test_nextseq_in_recorded with error') + return recorded_results, 'NOK' + + # Fetch RunParameter.xml file from remote server + l_run_parameter = os.path.join(wetlab_config.RUN_TEMP_DIRECTORY, wetlab_config.RUN_PARAMETER_NEXTSEQ) + s_run_parameter = os.path.join(wetlab_config.SAMBA_APPLICATION_FOLDER_NAME, run_folder, wetlab_config.RUN_PARAMETER_NEXTSEQ) + try: + l_run_parameter = fetch_remote_file (conn, run_folder, s_run_parameter, l_run_parameter) + logger.info('Sucessfully fetch of RunParameter file') + + recorded_results.append(('Successful RunParameter.xml file ', 'OK')) + except: + string_message = 'Unable to fetch the RunParameter.xml file ' + logging_errors(string_message, False, True) + recorded_results.append(('Successful RunParameter.xml file ', 'NOK')) + logger.debug ('End function create_run_test_nextseq_in_recorded with error') + return recorded_results, 'NOK' + # Test MiSeq run on recorded state + try: + update_nextseq_in_recorded_state = handle_nextseq_recorded_run (conn, run_folder, l_run_parameter, experiment_name) + + except ValueError as e : + recorded_results.append((str(e) , 'NOK')) + logger.debug ('End function create_run_test_nextseq_in_recorded with error') + return recorded_results, 'NOK' + except Exception as ex : + recorded_results.append((str(ex) , 'NOK')) + logger.debug ('End function create_run_test_nextseq_in_recorded with error') + return recorded_results, 'NOK' + + if update_nextseq_in_recorded_state == run_folder : + if 'Sample Sent' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): + recorded_results.append(('NextSeq Run is in Sample Sent state', 'OK')) + logger.debug ('End function create_run_test_nextseq_in_recorded') + return recorded_results, 'OK' + else : + recorded_results.append(('NextSeq Run is wrong state', 'NOK')) + logger.debug ('End function create_run_test_nextseq_in_recorded with error') + return recorded_results, 'NOK' + else: + recorded_results.append(('NextSeq function returns an invalid run ', 'NOK')) + logger.debug ('End function create_run_test_nextseq_in_recorded with error') + return recorded_results, 'NOK' + + return recorded_results, 'OK' + + + +def run_nextseq_test_sample_sent_to_Processing_Run (experiment_name) : + sample_sent_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function run_nextseq_test_sample_sent_to_Processing_Run') + run_name = RunProcess.objects.get(runName__exact = experiment_name) + conn = open_samba_connection() + + try: + update_in_sample_sent = manage_nextseq_in_samplesent (conn, run_name) + + except Exception as ex : + sample_sent_results.append(('MiSeq Run is in Processing Run state', 'NOK')) + logger.debug ('End function run_nextseq_test_sample_sent_to_Processing_Run with error') + return sample_sent_results, 'NOK' + + if update_in_sample_sent == experiment_name: + if 'Processing Run' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): + sample_sent_results.append(('Check log files from the sequencer', 'OK')) + sample_sent_results.append(('MiSeq Run is in Processing Run state', 'OK')) + logger.debug ('End function run_nextseq_test_sample_sent_to_Processing_Run') + return sample_sent_results, 'OK' + else : + sample_sent_results.append(('MiSeq Run is wrong state', 'NOK')) + logger.debug ('End function run_nextseq_test_sample_sent_to_Processing_Run with error') + return sample_sent_results, 'NOK' + else: + sample_sent_results.append(('MiSeq function returns an invalid run', 'NOK')) + logger.debug ('End function run_nextseq_test_sample_sent_to_Processing_Run with error') + return sample_sent_results, 'NOK' + + +def run_nextseq_test_Processing_Run_to_Processed_Run (experiment_name): + processing_run_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function run_nextseq_test_Processing_Run_to_Processed_Run') + run_name = RunProcess.objects.get(runName__exact = experiment_name) + conn = open_samba_connection() + + try: + update_in_procesing_run = manage_nextseq_in_processing_run (conn, run_name) + + except Exception as ex : + processing_run_results.append(('NextSeq Run is in Processing Run state', 'NOK')) + logger.debug ('End function run_nextseq_test_Processing_Run_to_Processed_Run with error') + return processing_run_results, 'NOK' + + if update_in_procesing_run == experiment_name: + if 'Processed Run' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): + processing_run_results.append(('Successful completion on Sequencer for MiSeq Run', 'OK')) + processing_run_results.append(('NextSeq Run is in Processed Run state', 'OK')) + logger.debug ('End function run_nextseq_test_Processing_Run_to_Processed_Run') + return processing_run_results, 'OK' + else : + processing_run_results.append(('NextSeq Run is wrong state', 'NOK')) + logger.debug ('End function run_nextseq_test_Processing_Run_to_Processed_Run with error') + return processing_run_results, 'NOK' + else: + processing_run_results.append(('NextSeq function returns an invalid run', 'NOK')) + logger.debug ('End function run_nextseq_test_Processing_Run_to_Processed_Run with error') + return processing_run_results, 'NOK' + + + + + + + + + + + + + + + + + + + + +def run_miseq_test_rec_to_sample_sent (new_run, experiment_name) : + recorded_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function run_miseq_test_rec_to_sample_sent') + working_path = settings.MEDIA_ROOT + os.chdir(working_path) + #import pdb; pdb.set_trace() + + try: + conn = open_samba_connection() + recorded_results.append(('Connection to remote server ', 'OK')) + logger.info('Success connection to remote server') + except Exception as ex : + string_message = 'Unable to connect to remote server ' + logging_errors(string_message, False, True) + recorded_results.append((str(ex) , 'NOK')) + return recorded_results, 'NOK' + + # check if test folder exists + run_data_root_folder = os.path.join('/', wetlab_config.SAMBA_APPLICATION_FOLDER_NAME , new_run) + try: + run_folder_list = conn.listPath( wetlab_config.SAMBA_SHARED_FOLDER_NAME, run_data_root_folder) + recorded_results.append(('Check if test Run folder exists ', 'OK')) + logger.info('Test Run folder exists on remote server') + except Exception as ex : + string_message = 'Test run folder does not exists ' + logging_errors(string_message, False, True) + recorded_results.append((str(ex) , 'NOK')) + return recorded_results, 'NOK' + + # Check user is defined in database + if not User.objects.filter(username__exact = 'test_user1').exists(): + user = User.objects.create_user(username='test_user1', + email='test_user1@iSkyLIMS.com', + password='test_user1') + + # Fetch RunParameter.xml file from remote server + l_run_parameter = os.path.join(wetlab_config.RUN_TEMP_DIRECTORY, wetlab_config.RUN_PARAMETER_NEXTSEQ) + s_run_parameter = os.path.join(wetlab_config.SAMBA_APPLICATION_FOLDER_NAME, new_run,wetlab_config.RUN_PARAMETER_NEXTSEQ) + try: + l_run_parameter = fetch_remote_file (conn, new_run, s_run_parameter, l_run_parameter) + logger.info('Sucessfully fetch of RunParameter file') + + recorded_results.append(('Successful RunParameter.xml file ', 'OK')) + except: + string_message = 'Unable to fetch the RunParameter.xml file ' + logging_errors(string_message, False, True) + recorded_results.append(('Successful RunParameter.xml file ', 'NOK')) + return recorded_results, 'NOK' + # Test MiSeq run on recorded state + try: + update_miseq_in_recorded_state = handle_miseq_run (conn, new_run, l_run_parameter, experiment_name) + + recorded_results.append(('Valid Sample Sheet ', 'OK')) + recorded_results.append(('Stored Sample Sheet ', 'OK')) + recorded_results.append(('Updated library name ', 'OK')) + recorded_results.append(('Stored Projects ', 'OK')) + except ValueError as e : + recorded_results.append((str(e) , 'NOK')) + logger.debug ('End function run_miseq_test_rec_to_sample_sent with error') + return recorded_results, 'NOK' + except Exception as ex : + recorded_results.append((str(ex) , 'NOK')) + logger.debug ('End function run_miseq_test_rec_to_sample_sent with error') + return recorded_results, 'NOK' + + if update_miseq_in_recorded_state == new_run : + if 'Sample Sent' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): + recorded_results.append(('MiSeq Run is in Sample Sent state', 'OK')) + logger.debug ('End function run_miseq_test_rec_to_sample_sent') + return recorded_results, 'OK' + else : + recorded_results.append(('MiSeq Run is wrong state', 'NOK')) + logger.debug ('End function run_miseq_test_rec_to_sample_sent with error') + return recorded_results, 'NOK' + else: + recorded_results.append(('MiSeq function returns an invalid run ', 'NOK')) + logger.debug ('End function run_miseq_test_rec_to_sample_sent with error') + return recorded_results, 'NOK' + + +def run_miseq_test_sample_sent_to_Processing_Run (experiment_name): + sample_sent_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function run_miseq_test_sample_sent_to_Processing_Run') + run_name = RunProcess.objects.get(runName__exact = experiment_name) + conn = open_samba_connection() + + try: + update_in_sample_sent = manage_miseq_in_samplesent (conn, run_name) + + except Exception as ex : + sample_sent_results.append(('MiSeq Run is in Processing Run state', 'NOK')) + logger.debug ('End function run_miseq_test_sample_sent_to_Processing_Run with error') + return sample_sent_results, 'NOK' + + if update_in_sample_sent == experiment_name: + if 'Processing Run' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): + sample_sent_results.append(('Check log files from the sequencer', 'OK')) + sample_sent_results.append(('MiSeq Run is in Processing Run state', 'OK')) + logger.debug ('End function run_miseq_test_sample_sent_to_Processing_Run') + return sample_sent_results, 'OK' + else : + sample_sent_results.append(('MiSeq Run is wrong state', 'NOK')) + logger.debug ('End function run_miseq_test_sample_sent_to_Processing_Run with error') + return sample_sent_results, 'NOK' + else: + sample_sent_results.append(('MiSeq function returns an invalid run', 'NOK')) + logger.debug ('End function run_miseq_test_sample_sent_to_Processing_Run with error') + return sample_sent_results, 'NOK' + +def run_miseq_test_Processing_Run_to_Processed_Run (experiment_name): + processing_run_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function run_miseq_test_Processing_Run_to_Processed_Run') + run_name = RunProcess.objects.get(runName__exact = experiment_name) + conn = open_samba_connection() + + try: + update_in_procesing_run = manage_miseq_in_processing_run (conn, run_name) + + except Exception as ex : + processing_run_results.append(('MiSeq Run is in Processing Run state', 'NOK')) + logger.debug ('End function run_miseq_test_Processing_Run_to_Processed_Run with error') + return processing_run_results, 'NOK' + + if update_in_procesing_run == experiment_name: + if 'Processed Run' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): + processing_run_results.append(('Successful completion on Sequencer for MiSeq Run', 'OK')) + processing_run_results.append(('MiSeq Run is in Processed Run state', 'OK')) + logger.debug ('End function run_miseq_test_Processing_Run_to_Processed_Run') + return processing_run_results, 'OK' + else : + processing_run_results.append(('MiSeq Run is wrong state', 'NOK')) + logger.debug ('End function run_miseq_test_Processing_Run_to_Processed_Run with error') + return processing_run_results, 'NOK' + else: + processing_run_results.append(('MiSeq function returns an invalid run', 'NOK')) + logger.debug ('End function run_miseq_test_Processing_Run_to_Processed_Run with error') + return processing_run_results, 'NOK' + +def run_test_Processed_Run_to_Processing_Bcl2fastq (experiment_name): + processed_run_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function run_test_Processed_Run_to_Processing_Bcl2fastq') + run_name = RunProcess.objects.get(runName__exact = experiment_name) + conn = open_samba_connection() + + try: + update_in_processing_run = manage_run_in_processed_run (conn, run_name) + + except Exception as ex : + processed_run_results.append(('Run in Processed Run state', 'NOK')) + logger.debug ('End function run_test_Processed_Run_to_Processing_Bcl2fastq with error') + return processed_run_results, 'NOK' + + if update_in_processing_run == experiment_name: + if 'Processing Bcl2fastq' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): + processed_run_results.append(('Successful completion on Sequencer for MiSeq Run', 'OK')) + processed_run_results.append(('Run is in Processing Bcl2fastq state', 'OK')) + logger.debug ('End function run_test_Processed_Run_to_Processing_Bcl2fastq') + return processed_run_results, 'OK' + else : + processed_run_results.append(('Run is wrong state', 'NOK')) + logger.debug ('End function run_test_Processed_Run_to_Processing_Bcl2fastq with error') + return processed_run_results, 'NOK' + else: + processed_run_results.append(('Function returns an invalid run', 'NOK')) + logger.debug ('End function run_test_Processed_Run_to_Processing_Bcl2fastq with error') + return processed_run_results, 'NOK' + +def run_test_Processing_Bcl2fastq_to_Processed_Bcl2fastq (experiment_name): + processing_bcl2fastq_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function run_test_Processing_Bcl2fastq_to_Processed_Bcl2fastq') + run_name = RunProcess.objects.get(runName__exact = experiment_name) + conn = open_samba_connection() + + try: + update_in_procesing_bclfastq = manage_run_in_processing_bcl2fastq (conn, run_name) + + except Exception as ex : + processing_bcl2fastq_results.append(('Run is in Processing Run state', 'NOK')) + logger.debug ('End function run_test_Processing_Bcl2fastq_to_Processed_Bcl2fastq with error') + return processing_bcl2fastq_results, 'NOK' + + if update_in_procesing_bclfastq == experiment_name: + if 'Processed Bcl2fastq' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): + processing_bcl2fastq_results.append(('Successful completion of Bcl2fastq conversion', 'OK')) + processing_bcl2fastq_results.append(('Bcl2fastq conversion date updated', 'OK')) + processing_bcl2fastq_results.append(('Run is in Processed Bcl2fastq state', 'OK')) + logger.debug ('End function run_test_Processing_Bcl2fastq_to_Processed_Bcl2fastq') + return processing_bcl2fastq_results, 'OK' + else : + processing_bcl2fastq_results.append(('Run is wrong state', 'NOK')) + logger.debug ('End function run_test_Processing_Bcl2fastq_to_Processed_Bcl2fastq with error') + return processing_bcl2fastq_results, 'NOK' + else: + processing_bcl2fastq_results.append(('Function returns an invalid run', 'NOK')) + logger.debug ('End function run_test_Processing_Bcl2fastq_to_Processed_Bcl2fastq with error') + return processing_bcl2fastq_results, 'NOK' + + +def run_test_Processed_Bcl2fastq_to_Completed (experiment_name): + processed_bcl2fastq_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function run_test_Processed_Bcl2fastq_to_Completed') + run_name = RunProcess.objects.get(runName__exact = experiment_name) + conn = open_samba_connection() + + try: + update_in_processed_bclfastq = manage_run_in_processed_bcl2fastq (conn, run_name) + + except Exception as ex : + processed_bcl2fastq_results.append(('Run in Processed Bcl2fastq state', 'NOK')) + logger.debug ('End function run_test_Processed_Bcl2fastq_to_Completed with error') + return processed_bcl2fastq_results, 'NOK' + + if update_in_processed_bclfastq == experiment_name: + if 'Completed' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): + processed_bcl2fastq_results.append(('Successful demultiplexing files', 'OK')) + processed_bcl2fastq_results.append(('Updated database with demultiplexion data', 'OK')) + processed_bcl2fastq_results.append(('Projects in the run successfuly updated', 'OK')) + processed_bcl2fastq_results.append(('Stored graphics ', 'OK')) + processed_bcl2fastq_results.append(('Run is in Processing Completed state', 'OK')) + logger.debug ('End function run_test_Processed_Bcl2fastq_to_Completed') + return processed_bcl2fastq_results, 'OK' + else : + processed_bcl2fastq_results.append(('Run is wrong state', 'NOK')) + logger.debug ('End function run_test_Processed_Bcl2fastq_to_Completed with error') + return processed_bcl2fastq_results, 'NOK' + else: + processed_bcl2fastq_results.append(('Function returns an invalid run', 'NOK')) + logger.debug ('End function run_test_Processed_Bcl2fastq_to_Completed with error') + return processed_bcl2fastq_results, 'NOK' + + + diff --git a/views.py b/views.py index f069800..1817d60 100644 --- a/views.py +++ b/views.py @@ -26,6 +26,7 @@ from .utils.generic_functions import * from .utils.library_kits import * from .utils.fetching_information import * +from .utils.testing_wetlab_configuration import * #from .utils.samplesheet_checks import * #from .utils.parsing_run_info import get_machine_lanes #from .utils.wetlab_misc_utilities import normalized_data @@ -2908,3 +2909,258 @@ def update_tables_date (request): return render(request, 'iSkyLIMS_wetlab/info_page.html', {'content':['The dates for the Runs have been updated']}) else: return render(request, 'iSkyLIMS_wetlab/error_page.html', {'content':['There is no tables which requiered to update with date information']}) + + +@login_required +def configuration_test (request): + # check user privileges + if request.user.is_authenticated: + #import pdb; pdb.set_trace() + if not request.user.is_staff or not request.user.is_superuser: + return render (request,'iSkyLIMS_wetlab/error_page.html', {'content':['You do have the enough privileges to see this page ','Contact with your administrator .']}) + else: + #redirect to login webpage + return redirect ('/accounts/login') + if request.method=='POST' and request.POST['action'] == 'basicTest': + test_results = {} + wetlab_config = os.path.join(settings.BASE_DIR, 'iSkyLIMS_wetlab', 'wetlab_config.py') + test_results['config_file'] = get_config_file(wetlab_config) + test_results['attr_files'] = get_files_attribute(os.path.join(settings.MEDIA_ROOT, 'wetlab')) + test_results['database_access'] = check_access_database() + test_results['samba_connection'] = check_samba_connection() + + #if test_results['config_file'] and test_results['attr_files'] and test_results['database_access'] and test_results['samba_connection']: + if test_results['config_file'] and test_results['attr_files'] and test_results['database_access']: + test_results['basic_checks_ok'] = 'OK' + #import pdb; pdb.set_trace() + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'test_results': test_results}) + ############################## + ###### NextSeq Test ########## + ############################## + elif request.method=='POST' and request.POST['action'] == 'runNextSeq': + if 'Delete' in request.POST : + delete_test_run ('NextSeq_Test_0001') + return render(request,'iSkyLIMS_wetlab/ConfigurationTest.html') + + + + runNextSeq_results = {} + log_trace = [] + working_path = settings.MEDIA_ROOT + os.chdir(working_path) + config_file = os.path.join(settings.BASE_DIR,'iSkyLIMS_wetlab', 'tests', 'logging_test_config.ini' ) + log_file = get_log_file_name(config_file) + if os.path.isfile (log_file): + os.remove(log_file) + logger=open_log(config_file) + + logger.info('###########---Start Testing NextSeq Run -----############') + # create run in Recorded state for testing + test_run_remote_folder = 'NextSeq_Test' + experiment_name = 'NextSeq_Test_0001' + runNextSeq_results['CreateRun'] , result_ok = create_run_test_nextseq_in_recorded(test_run_remote_folder, experiment_name ) + + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runNextSeq_results': runNextSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + + # Start testing on recorded state + runNextSeq_results['Recorded'] , result_ok = run_nextseq_test_rec_to_sample_sent(test_run_remote_folder, experiment_name) + + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + #import pdb; pdb.set_trace() + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runMiSeq_results['recorded_ok'] = 'OK' + + # Processing Run + runNextSeq_results['Sample_Sent'] , result_ok = run_nextseq_test_sample_sent_to_Processing_Run (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runNextSeq_results['sample_sent_ok'] = 'OK' + + # Processing Run + runNextSeq_results['Processing_Run'] , result_ok = run_nextseq_test_Processing_Run_to_Processed_Run (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runNextSeq_results['processing_run_ok'] = 'OK' + + # Processed Run + runNextSeq_results['Processed_Run'] , result_ok = run_test_Processed_Run_to_Processing_Bcl2fastq (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runNextSeq_results['processed_run_ok'] = 'OK' + + # Processing Bcl2fastq + runNextSeq_results['Processing_Bcl2fastq'] , result_ok = run_test_Processing_Bcl2fastq_to_Processed_Bcl2fastq (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runNextSeq_results['processing_bcl2fastq_ok'] = 'OK' + + # Processed Bcl2fastq + runNextSeq_results['Processed_Bcl2fastq'] , result_ok = run_test_Processed_Bcl2fastq_to_Completed (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runNextSeq_results['processed_bcl2fast2_ok'] = 'OK' + runNextSeq_results['completed_ok'] = 'ok' + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + + + + + + + elif request.method=='POST' and request.POST['action'] == 'runMiSeq': + if 'Delete' in request.POST : + delete_test_run ('MiSeq_Test_0001') + return render(request,'iSkyLIMS_wetlab/ConfigurationTest.html') + + runMiSeq_results = {} + log_trace = [] + config_file = os.path.join(settings.BASE_DIR,'iSkyLIMS_wetlab', 'tests', 'logging_test_config.ini' ) + log_file = get_log_file_name(config_file) + if os.path.isfile (log_file): + os.remove(log_file) + logger=open_log(config_file) + + logger.info('###########---Start Testing MiSeq Run -----############') + if run_exists_in_db('MiSeq_Test_0001'): + delete_graphic_folder_if_exists ('MiSeq_Test_0001') + delete_run_in_db('MiSeq_Test_0001') + logger.info('Deleting miSEq test run from previous test') + + test_run_remote_folder = 'MiSeq_Test' + experiment_name = 'MiSeq_Test_0001' + # Start testing on recorded state + runMiSeq_results['Recorded'] , result_ok = run_miseq_test_rec_to_sample_sent(test_run_remote_folder, experiment_name) + + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + #import pdb; pdb.set_trace() + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runMiSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runMiSeq_results['recorded_ok'] = 'OK' + + # Processing Run + runMiSeq_results['Sample_Sent'] , result_ok = run_miseq_test_sample_sent_to_Processing_Run (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runMiSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runMiSeq_results['sample_sent_ok'] = 'OK' + + # Processing Run + runMiSeq_results['Processing_Run'] , result_ok = run_miseq_test_Processing_Run_to_Processed_Run (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runMiSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runMiSeq_results['processing_run_ok'] = 'OK' + + # Processed Run + runMiSeq_results['Processed_Run'] , result_ok = run_test_Processed_Run_to_Processing_Bcl2fastq (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runMiSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runMiSeq_results['processed_run_ok'] = 'OK' + + # Processing Bcl2fastq + runMiSeq_results['Processing_Bcl2fastq'] , result_ok = run_test_Processing_Bcl2fastq_to_Processed_Bcl2fastq (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runMiSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runMiSeq_results['processing_bcl2fastq_ok'] = 'OK' + + # Processed Bcl2fastq + runMiSeq_results['Processed_Bcl2fastq'] , result_ok = run_test_Processed_Bcl2fastq_to_Completed (experiment_name) + if result_ok == 'NOK' : + with open (log_file, 'r') as fh : + for line in fh : + line = line.replace('\n', '') + log_trace.append(line) + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runMiSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + else: + runMiSeq_results['processed_bcl2fast2_ok'] = 'OK' + runMiSeq_results['completed_ok'] = 'ok' + + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runMiSeq_results, + 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) + + + else: + return render(request,'iSkyLIMS_wetlab/ConfigurationTest.html') From 38014d78659d5802873d024275e1d3231c5d1093 Mon Sep 17 00:00:00 2001 From: luissian Date: Sun, 19 May 2019 23:41:50 +0200 Subject: [PATCH 03/12] Fixed bug to call set_state_in_all_projects. This function notlonger exists. --- .../iSkyLIMS_wetlab/ConfigurationTest.html | 27 +++++++++++-------- utils/nextseq_run_functions.py | 7 ++--- utils/testing_wetlab_configuration.py | 15 ++++++++--- views.py | 19 ++++++------- 4 files changed, 39 insertions(+), 29 deletions(-) diff --git a/templates/iSkyLIMS_wetlab/ConfigurationTest.html b/templates/iSkyLIMS_wetlab/ConfigurationTest.html index da695a7..d4fce7a 100644 --- a/templates/iSkyLIMS_wetlab/ConfigurationTest.html +++ b/templates/iSkyLIMS_wetlab/ConfigurationTest.html @@ -157,7 +157,7 @@

Unable to connect via Samba

- {% if test_results.basic_checks_ok or runNextSeq_results.basic_checks_ok or runMiSeq_results.basic_checks_ok %} + {% if test_results.basic_checks_ok %}
@@ -214,7 +214,7 @@

Unable to connect via Samba

-

2. - Test Executed to create NextSeq Run +

1. - Test Executed to create NextSeq Run {% if runNextSeq_results.create_run_ok %} {% else %} @@ -236,7 +236,7 @@

Unable to connect via Samba

{%if runNextSeq_results.Recorded %}
-

1. - Test Executed on Recorded state +

2. - Test Executed on Recorded state {% if runNextSeq_results.recorded_ok %} {% else %} @@ -261,7 +261,7 @@

Unable to connect via Samba

{%if runNextSeq_results.Sample_Sent %}
-

2. - Test Executed on Sample Sent state +

3. - Test Executed on Sample Sent state {% if runNextSeq_results.sample_sent_ok %} {% else %} @@ -281,9 +281,9 @@

Unable to connect via Samba

{%endif %} - {% if unNextSeq_results.Processing_Run %} + {% if runNextSeq_results.Processing_Run %}
-

3. - Test Executed on Processing Run +

4. - Test Executed on Processing Run {% if runNextSeq_results.processing_run_ok %} {% else %} @@ -312,11 +312,13 @@

Unable to connect via Samba

+

Common Test Cases for Runs

+ {% if runNextSeq_results.Processed_Run %}
-

4. - Test Executed on Processed Run state +

5. - Test Executed on Processed Run state {% if runNextSeq_results.processed_run_ok %} {% else %} @@ -335,9 +337,10 @@

Unable to connect via Samba

{% endfor %}

- + {% endif %} + {% if runNextSeq_results.Processing_Bcl2Fastq %}
-

5. - Test Executed on Processing Bcl2fastq state +

6. - Test Executed on Processing Bcl2fastq state {% if runNextSeq_results.processing_bcl2fastq_ok %} {% else %} @@ -357,10 +360,11 @@

Unable to connect via Samba

- + {% endif %}
+ {% if runNextSeq_results.Processed_Bcl2fastq %}
-

6. - Test Executed on Processed Bcl2fastq +

7. - Test Executed on Processed Bcl2fastq {% if runNextSeq_results.processed_bcl2fast2_ok %} {% else %} @@ -379,6 +383,7 @@

Unable to connect via Samba

{% endfor %}

+ {% endif %}
diff --git a/utils/nextseq_run_functions.py b/utils/nextseq_run_functions.py index 9e6af66..a97d759 100644 --- a/utils/nextseq_run_functions.py +++ b/utils/nextseq_run_functions.py @@ -170,18 +170,17 @@ def manage_nextseq_in_samplesent(conn, run_object_name) : logger.info ('Deleting local copy of completion status') # cleaning up the completion in local temporary file os.remove(l_run_completion) - if not completion_status : string_message = 'Run status was ' + status_run logging_errors (string_message, False, False) # Set run to cancelled state run_object_name.set_run_state('Cancelled') - set_state_in_all_projects(experiment_name, 'Cancelled') logger.debug ('End function for handling NextSeq run Cancelled') raise ValueError ('Run was CANCELLED') else: + import pdb; pdb.set_trace() run_updated = run_object_name.set_run_state('Processing Run') - set_state_in_all_projects(experiment_name, 'Processing Run') + import pdb; pdb.set_trace() logger.info('Run %s is now on Processing Run state', experiment_name) return experiment_name @@ -201,7 +200,6 @@ def manage_nextseq_in_processing_run(conn, run_object_name) : Functions: check_completion_success # located in this file get_attributes_remote_file # Located at utils.generic_functions - set_state_in_all_projects # Located at utils.generic_functions Variable: l_run_completion # completion file name in the local temporary folder run_object_name # RunProcess object @@ -247,7 +245,6 @@ def manage_nextseq_in_processing_run(conn, run_object_name) : raise ValueError ('Run was CANCELLED') else: run_updated = run_object_name.set_run_state('Processed Run') - set_state_in_all_projects(experiment_name, 'Processed Run') logger.info('Run %s is now on Processed Run state', experiment_name) return experiment_name diff --git a/utils/testing_wetlab_configuration.py b/utils/testing_wetlab_configuration.py index ca6871d..0850693 100644 --- a/utils/testing_wetlab_configuration.py +++ b/utils/testing_wetlab_configuration.py @@ -9,6 +9,7 @@ from iSkyLIMS_wetlab.utils.generic_functions import * from iSkyLIMS_wetlab.utils.update_run_state import handle_miseq_run from iSkyLIMS_wetlab.utils.miseq_run_functions import * +from iSkyLIMS_wetlab.utils.nextseq_run_functions import * from iSkyLIMS_wetlab.utils.common_run_functions import manage_run_in_processed_run, manage_run_in_processing_bcl2fastq, manage_run_in_processed_bcl2fastq from iSkyLIMS_wetlab.utils.sample_sheet_utils import * @@ -182,8 +183,13 @@ def create_run_test_nextseq_in_recorded (run_folder, experiment_name ) : def run_nextseq_test_rec_to_sample_sent (run_folder, experiment_name) : + recorded_results = [] + logger = logging.getLogger(__name__) + logger.debug ('Starting function run_nextseq_test_rec_to_sample_sent') + conn = open_samba_connection() # check if test folder exists + run_data_root_folder = os.path.join('/', wetlab_config.SAMBA_APPLICATION_FOLDER_NAME , run_folder) try: run_folder_list = conn.listPath( wetlab_config.SAMBA_SHARED_FOLDER_NAME, run_data_root_folder) @@ -193,7 +199,7 @@ def run_nextseq_test_rec_to_sample_sent (run_folder, experiment_name) : string_message = 'Test run folder does not exists ' logging_errors(string_message, False, True) recorded_results.append((str(ex) , 'NOK')) - logger.debug ('End function create_run_test_nextseq_in_recorded with error') + logger.debug ('End function run_nextseq_test_rec_to_sample_sent with error') return recorded_results, 'NOK' # Fetch RunParameter.xml file from remote server @@ -223,7 +229,7 @@ def run_nextseq_test_rec_to_sample_sent (run_folder, experiment_name) : logger.debug ('End function create_run_test_nextseq_in_recorded with error') return recorded_results, 'NOK' - if update_nextseq_in_recorded_state == run_folder : + if experiment_name == update_nextseq_in_recorded_state.get_run_name(): if 'Sample Sent' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): recorded_results.append(('NextSeq Run is in Sample Sent state', 'OK')) logger.debug ('End function create_run_test_nextseq_in_recorded') @@ -255,7 +261,8 @@ def run_nextseq_test_sample_sent_to_Processing_Run (experiment_name) : sample_sent_results.append(('MiSeq Run is in Processing Run state', 'NOK')) logger.debug ('End function run_nextseq_test_sample_sent_to_Processing_Run with error') return sample_sent_results, 'NOK' - + + import pdb; pdb.set_trace() if update_in_sample_sent == experiment_name: if 'Processing Run' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): sample_sent_results.append(('Check log files from the sequencer', 'OK')) @@ -286,7 +293,7 @@ def run_nextseq_test_Processing_Run_to_Processed_Run (experiment_name): processing_run_results.append(('NextSeq Run is in Processing Run state', 'NOK')) logger.debug ('End function run_nextseq_test_Processing_Run_to_Processed_Run with error') return processing_run_results, 'NOK' - + import pdb; pdb.set_trace() if update_in_procesing_run == experiment_name: if 'Processed Run' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): processing_run_results.append(('Successful completion on Sequencer for MiSeq Run', 'OK')) diff --git a/views.py b/views.py index 1817d60..e0c13d6 100644 --- a/views.py +++ b/views.py @@ -2968,7 +2968,8 @@ def configuration_test (request): return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runNextSeq_results': runNextSeq_results, 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) - + else: + runNextSeq_results['create_run_ok'] = 'OK' # Start testing on recorded state runNextSeq_results['Recorded'] , result_ok = run_nextseq_test_rec_to_sample_sent(test_run_remote_folder, experiment_name) @@ -2978,10 +2979,10 @@ def configuration_test (request): line = line.replace('\n', '') log_trace.append(line) #import pdb; pdb.set_trace() - return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runNextSeq_results': runNextSeq_results, 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) else: - runMiSeq_results['recorded_ok'] = 'OK' + runNextSeq_results['recorded_ok'] = 'OK' # Processing Run runNextSeq_results['Sample_Sent'] , result_ok = run_nextseq_test_sample_sent_to_Processing_Run (experiment_name) @@ -2991,7 +2992,7 @@ def configuration_test (request): line = line.replace('\n', '') log_trace.append(line) - return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runNextSeq_results': runNextSeq_results, 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) else: runNextSeq_results['sample_sent_ok'] = 'OK' @@ -3004,7 +3005,7 @@ def configuration_test (request): line = line.replace('\n', '') log_trace.append(line) - return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runNextSeq_results': runNextSeq_results, 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) else: runNextSeq_results['processing_run_ok'] = 'OK' @@ -3017,7 +3018,7 @@ def configuration_test (request): line = line.replace('\n', '') log_trace.append(line) - return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runNextSeq_results': runNextSeq_results, 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) else: runNextSeq_results['processed_run_ok'] = 'OK' @@ -3030,7 +3031,7 @@ def configuration_test (request): line = line.replace('\n', '') log_trace.append(line) - return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runNextSeq_results': runNextSeq_results, 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) else: runNextSeq_results['processing_bcl2fastq_ok'] = 'OK' @@ -3043,13 +3044,13 @@ def configuration_test (request): line = line.replace('\n', '') log_trace.append(line) - return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runNextSeq_results': runNextSeq_results, 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) else: runNextSeq_results['processed_bcl2fast2_ok'] = 'OK' runNextSeq_results['completed_ok'] = 'ok' - return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runMiSeq_results': runNextSeq_results, + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'runNextSeq_results': runNextSeq_results, 'log_trace': log_trace, 'basic_checks_ok' : 'OK'}) From aa001a128d05d2a814df316d48cdc60c760bb415 Mon Sep 17 00:00:00 2001 From: luissian Date: Mon, 20 May 2019 00:05:23 +0200 Subject: [PATCH 04/12] Implemented Test for NextSeq --- templates/iSkyLIMS_wetlab/ConfigurationTest.html | 5 +++-- utils/nextseq_run_functions.py | 2 -- utils/testing_wetlab_configuration.py | 5 +++-- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/templates/iSkyLIMS_wetlab/ConfigurationTest.html b/templates/iSkyLIMS_wetlab/ConfigurationTest.html index d4fce7a..5ca34a0 100644 --- a/templates/iSkyLIMS_wetlab/ConfigurationTest.html +++ b/templates/iSkyLIMS_wetlab/ConfigurationTest.html @@ -338,7 +338,7 @@

Unable to connect via Samba

{% endif %} - {% if runNextSeq_results.Processing_Bcl2Fastq %} + {% if runNextSeq_results.Processing_Bcl2fastq %}

6. - Test Executed on Processing Bcl2fastq state {% if runNextSeq_results.processing_bcl2fastq_ok %} @@ -359,8 +359,9 @@

Unable to connect via Samba

{% endfor %}
-
{% endif %} +
+
{% if runNextSeq_results.Processed_Bcl2fastq %}
diff --git a/utils/nextseq_run_functions.py b/utils/nextseq_run_functions.py index a97d759..df4566f 100644 --- a/utils/nextseq_run_functions.py +++ b/utils/nextseq_run_functions.py @@ -178,9 +178,7 @@ def manage_nextseq_in_samplesent(conn, run_object_name) : logger.debug ('End function for handling NextSeq run Cancelled') raise ValueError ('Run was CANCELLED') else: - import pdb; pdb.set_trace() run_updated = run_object_name.set_run_state('Processing Run') - import pdb; pdb.set_trace() logger.info('Run %s is now on Processing Run state', experiment_name) return experiment_name diff --git a/utils/testing_wetlab_configuration.py b/utils/testing_wetlab_configuration.py index 0850693..d7b80cc 100644 --- a/utils/testing_wetlab_configuration.py +++ b/utils/testing_wetlab_configuration.py @@ -172,8 +172,9 @@ def create_run_test_nextseq_in_recorded (run_folder, experiment_name ) : new_sample_sheet_name = store_sample_sheet_in_run (l_sample, experiment_name ) recorded_results.append(('Successful update of Sample Sheet in database', 'OK')) - new_sample_sheet_file = os.path.join (settings.MEDIA_ROOT, wetlab_config.RUN_SAMPLE_SHEET_DIRECTORY, new_sample_sheet_name) - bs_file = run_process.get_sample_file() + #new_sample_sheet_file = os.path.join (settings.MEDIA_ROOT, wetlab_config.RUN_SAMPLE_SHEET_DIRECTORY, new_sample_sheet_name) + #import pdb; pdb.set_trace() + bs_file = new_sample_sheet_name # create projects in DDBB for project in projects : create_project(project, experiment_name, bs_file) From 17472c82f0f5015e5d41c7fe546e176930573cb2 Mon Sep 17 00:00:00 2001 From: luissian Date: Mon, 20 May 2019 18:45:04 +0200 Subject: [PATCH 05/12] Removed trace stops --- utils/testing_wetlab_configuration.py | 17 ++--------------- 1 file changed, 2 insertions(+), 15 deletions(-) diff --git a/utils/testing_wetlab_configuration.py b/utils/testing_wetlab_configuration.py index d7b80cc..dc389b6 100644 --- a/utils/testing_wetlab_configuration.py +++ b/utils/testing_wetlab_configuration.py @@ -30,15 +30,7 @@ def get_config_file (config_file): def get_files_attribute (directory): attr_files = [] - ''' - #try: - for entry in os.scandir(directory): - attr_files.append([oct(os.stat(entry).st_mode)[-3:], - pwd.getpwuid(entry.stat().st_uid).pw_name, - grp.getgrgid(entry.stat().st_gid).gr_name, - entry.name]) - import pdb; pdb.set_trace() - ''' + try: for (dirpath, dirnames, filenames) in os.walk(directory, topdown=True): for d in dirnames: @@ -77,7 +69,6 @@ def run_exists_in_db (run_name): def delete_graphic_folder_if_exists(run_name): run_object = RunProcess.objects.get(runName__exact = run_name) if RunningParameters.objects.filter(runName_id = RunProcess.objects.get(runName__exact = run_name)).exists() : - #import pdb; pdb.set_trace() folder_graphic = RunningParameters.objects.get(runName_id = RunProcess.objects.get(runName__exact = run_name)).get_run_folder() if os.path.isdir(os.path.join(settings.MEDIA_ROOT,'wetlab', 'images_plot', folder_graphic)) : shutil.rmtree(os.path.join(settings.MEDIA_ROOT,'wetlab', 'images_plot', folder_graphic)) @@ -110,7 +101,6 @@ def folder_run_exists (conn, folder_run_name): return conn def create_project (p_name, run_name, bs_file): - #import pdb; pdb.set_trace() n_project = Projects( runprocess_id = RunProcess.objects.get(runName__exact = run_name), LibraryKit_id = LibraryKit.objects.get(libraryName__exact = 'Nextera XT Index Kit v2 Set B'), projectName = p_name , libraryKit='Nextera XT V2 ', baseSpaceFile = bs_file, @@ -173,7 +163,6 @@ def create_run_test_nextseq_in_recorded (run_folder, experiment_name ) : recorded_results.append(('Successful update of Sample Sheet in database', 'OK')) #new_sample_sheet_file = os.path.join (settings.MEDIA_ROOT, wetlab_config.RUN_SAMPLE_SHEET_DIRECTORY, new_sample_sheet_name) - #import pdb; pdb.set_trace() bs_file = new_sample_sheet_name # create projects in DDBB for project in projects : @@ -263,7 +252,6 @@ def run_nextseq_test_sample_sent_to_Processing_Run (experiment_name) : logger.debug ('End function run_nextseq_test_sample_sent_to_Processing_Run with error') return sample_sent_results, 'NOK' - import pdb; pdb.set_trace() if update_in_sample_sent == experiment_name: if 'Processing Run' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): sample_sent_results.append(('Check log files from the sequencer', 'OK')) @@ -294,7 +282,6 @@ def run_nextseq_test_Processing_Run_to_Processed_Run (experiment_name): processing_run_results.append(('NextSeq Run is in Processing Run state', 'NOK')) logger.debug ('End function run_nextseq_test_Processing_Run_to_Processed_Run with error') return processing_run_results, 'NOK' - import pdb; pdb.set_trace() if update_in_procesing_run == experiment_name: if 'Processed Run' == RunProcess.objects.get(runName__exact = experiment_name).get_state(): processing_run_results.append(('Successful completion on Sequencer for MiSeq Run', 'OK')) @@ -335,7 +322,7 @@ def run_miseq_test_rec_to_sample_sent (new_run, experiment_name) : logger.debug ('Starting function run_miseq_test_rec_to_sample_sent') working_path = settings.MEDIA_ROOT os.chdir(working_path) - #import pdb; pdb.set_trace() + try: conn = open_samba_connection() From 5604545a9056c4734e1d30c6259651a51baf421c Mon Sep 17 00:00:00 2001 From: luissian Date: Mon, 20 May 2019 19:39:33 +0200 Subject: [PATCH 06/12] Improve the information when Samba Connection is not available --- .../iSkyLIMS_wetlab/ConfigurationTest.html | 23 +++++++++++++--- utils/testing_wetlab_configuration.py | 27 ++++++++++++++----- views.py | 9 ++++--- 3 files changed, 47 insertions(+), 12 deletions(-) diff --git a/templates/iSkyLIMS_wetlab/ConfigurationTest.html b/templates/iSkyLIMS_wetlab/ConfigurationTest.html index 5ca34a0..7d523fe 100644 --- a/templates/iSkyLIMS_wetlab/ConfigurationTest.html +++ b/templates/iSkyLIMS_wetlab/ConfigurationTest.html @@ -108,7 +108,7 @@

Unable to fetch the permision files

Database access - {% if test_results.database_access %} + {% if test_results.database_access == 'OK' %} {% else %} @@ -134,7 +134,7 @@

Unable to connect to database

Samba connection - {% if test_results.samba_connection %} + {% if test_results.samba_connection == 'OK' %} {% else %} @@ -157,7 +157,7 @@

Unable to connect via Samba

- {% if test_results.basic_checks_ok %} + {% if test_results.basic_checks_ok == 'OK' %}
@@ -187,6 +187,23 @@

Unable to connect via Samba

+ + {% else %} +
+
+
+

Basic test not passed

+
+

Some of the test cases were not passed. Check the configuration files to find out the error and re-run the test again.

+

You can not go further in the testing while the Basic test are not passed OK.

+
+ {% csrf_token %} + +
+ +
+
+ {% endif %} {% elif runNextSeq_results %} diff --git a/utils/testing_wetlab_configuration.py b/utils/testing_wetlab_configuration.py index dc389b6..9b3e9c7 100644 --- a/utils/testing_wetlab_configuration.py +++ b/utils/testing_wetlab_configuration.py @@ -46,17 +46,32 @@ def get_files_attribute (directory): def check_access_database (): try: runs = RunProcess.objects.all() - return True + return 'OK' except: - return + return 'NOK' def check_samba_connection() : + ''' + conn=SMBConnection(wetlab_config.SAMBA_USER_ID, wetlab_config.SAMBA_USER_PASSWORD, + wetlab_config.SAMBA_SHARED_FOLDER_NAME,wetlab_config.SAMBA_REMOTE_SERVER_NAME, + use_ntlm_v2=wetlab_config.SAMBA_NTLM_USED,domain=wetlab_config.SAMBA_DOMAIN, + is_direct_tcp=wetlab_config.IS_DIRECT_TCP ) + try: + if wetlab_config.SAMBA_HOST_NAME : + conn.connect(socket.gethostbyname(wetlab_config.SAMBA_HOST_NAME), int(wetlab_config.SAMBA_PORT_SERVER)) + else: + conn.connect(wetlab_config.SAMBA_IP_SERVER, int(wetlab_config.SAMBA_PORT_SERVER)) + except: + import pdb; pdb.set_trace() + return 'NOK' + ''' try: open_samba_connection() - return True - except : - return - + return 'OK' + except : + return 'NOK' + + def run_exists_in_db (run_name): diff --git a/views.py b/views.py index e0c13d6..af28561 100644 --- a/views.py +++ b/views.py @@ -2929,10 +2929,13 @@ def configuration_test (request): test_results['database_access'] = check_access_database() test_results['samba_connection'] = check_samba_connection() + test_results['basic_checks_ok'] = 'OK' #if test_results['config_file'] and test_results['attr_files'] and test_results['database_access'] and test_results['samba_connection']: - if test_results['config_file'] and test_results['attr_files'] and test_results['database_access']: - test_results['basic_checks_ok'] = 'OK' - #import pdb; pdb.set_trace() + for result in test_results : + if test_results[result] == 'NOK': + test_results['basic_checks_ok'] = 'NOK' + break + return render (request,'iSkyLIMS_wetlab/ConfigurationTest.html', {'test_results': test_results}) ############################## ###### NextSeq Test ########## From 9d6595eecce849702ae4e0d367edebbb9bda04bf Mon Sep 17 00:00:00 2001 From: luissian Date: Mon, 20 May 2019 21:17:05 +0200 Subject: [PATCH 07/12] Added iSkyLIMS settings in the test --- .../iSkyLIMS_wetlab/ConfigurationTest.html | 32 ++++++++++++++++++- utils/testing_wetlab_configuration.py | 24 ++++++++++++++ views.py | 1 + 3 files changed, 56 insertions(+), 1 deletion(-) diff --git a/templates/iSkyLIMS_wetlab/ConfigurationTest.html b/templates/iSkyLIMS_wetlab/ConfigurationTest.html index 7d523fe..19e86b5 100644 --- a/templates/iSkyLIMS_wetlab/ConfigurationTest.html +++ b/templates/iSkyLIMS_wetlab/ConfigurationTest.html @@ -45,6 +45,36 @@
+
+
+
+

iSkyLIMS configuration settings + {% if test_results.iSkyLIMS_settings %} + + {% else %} + + {% endif %} +

+
+
+
+ {% if test_results.iSkyLIMS_settings %} + + 

+{% for line in test_results.iSkyLIMS_settings %}
+    {{ line }}
+{% endfor %}
+
+ {% else %} +

Unable to fetch iSkyLIMS configuration file

+ {% endif %} +
+
+
+
+
+
+
@@ -66,7 +96,7 @@ {% endfor %} {% else %} -

Unable to fetch the configuration file

+

Unable to fetch the iSkyLIMS wetlab configuration file

{% endif %}
diff --git a/utils/testing_wetlab_configuration.py b/utils/testing_wetlab_configuration.py index 9b3e9c7..c5a489c 100644 --- a/utils/testing_wetlab_configuration.py +++ b/utils/testing_wetlab_configuration.py @@ -43,6 +43,30 @@ def get_files_attribute (directory): return return attr_files +def get_iSkyLIMS_settings(): + s_file = [] + settings_file = os.path.join(settings.BASE_DIR, 'iSkyLIMS' , 'settings.py') + try: + with open (settings_file ,'r') as fh: + for line in fh: + if 'PASSWORD' in line or 'SECRET_KEY' in line : + if not 'AUTH_PASSWORD_VALIDATORS' in line : + if '=' in line : + split_separator = '=' + else : + split_separator = ':' + hide_passwd = line.split(split_separator) + hide_passwd[1] = 'XXXXXXXXXXXXXXXXX' + line = ' = '.join(hide_passwd) + + line = line.replace('\n', '') + s_file.append(line) + except: + return + + return s_file + + def check_access_database (): try: runs = RunProcess.objects.all() diff --git a/views.py b/views.py index af28561..ee43310 100644 --- a/views.py +++ b/views.py @@ -2924,6 +2924,7 @@ def configuration_test (request): if request.method=='POST' and request.POST['action'] == 'basicTest': test_results = {} wetlab_config = os.path.join(settings.BASE_DIR, 'iSkyLIMS_wetlab', 'wetlab_config.py') + test_results['iSkyLIMS_settings'] = get_iSkyLIMS_settings() test_results['config_file'] = get_config_file(wetlab_config) test_results['attr_files'] = get_files_attribute(os.path.join(settings.MEDIA_ROOT, 'wetlab')) test_results['database_access'] = check_access_database() From 1c6219a6d874ecd2a306f00ac7ba82dc1a7d58ff Mon Sep 17 00:00:00 2001 From: luissian Date: Tue, 21 May 2019 10:47:03 +0200 Subject: [PATCH 08/12] Create test user for nextseq if user does not exists --- utils/testing_wetlab_configuration.py | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/utils/testing_wetlab_configuration.py b/utils/testing_wetlab_configuration.py index c5a489c..1afae76 100644 --- a/utils/testing_wetlab_configuration.py +++ b/utils/testing_wetlab_configuration.py @@ -153,6 +153,13 @@ def create_run_test_nextseq_in_recorded (run_folder, experiment_name ) : recorded_results = [] logger = logging.getLogger(__name__) logger.debug ('Starting function create_run_test_nextseq') + + # Check user is defined in database + if not User.objects.filter(username__exact = 'test_user1').exists(): + user = User.objects.create_user(username='test_user1', + email='test_user1@iSkyLIMS.com', + password='test_user1') + # if run exist, then delete if before created it again if RunProcess.objects.filter(runName__exact = experiment_name).exists() : run_name = RunProcess.objects.get(runName__exact = experiment_name) From b554e9951cef850614295b08e5af0de5a981e2e1 Mon Sep 17 00:00:00 2001 From: lchapado Date: Wed, 22 May 2019 13:41:07 +0200 Subject: [PATCH 09/12] Fix error if library doesnot exists --- utils/testing_wetlab_configuration.py | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/utils/testing_wetlab_configuration.py b/utils/testing_wetlab_configuration.py index 1afae76..4297a6f 100644 --- a/utils/testing_wetlab_configuration.py +++ b/utils/testing_wetlab_configuration.py @@ -140,6 +140,11 @@ def folder_run_exists (conn, folder_run_name): return conn def create_project (p_name, run_name, bs_file): + + if not LibraryKit.objects.filter(libraryName__exact = 'Nextera XT Index Kit v2 Set B').exists() : + new_lib_kit = LibraryKit(libraryName = 'Nextera XT Index Kit v2 Set B') + new_lib_kit.save() + n_project = Projects( runprocess_id = RunProcess.objects.get(runName__exact = run_name), LibraryKit_id = LibraryKit.objects.get(libraryName__exact = 'Nextera XT Index Kit v2 Set B'), projectName = p_name , libraryKit='Nextera XT V2 ', baseSpaceFile = bs_file, From 27a057dddf2ed83986f73add1e06fee7135002d7 Mon Sep 17 00:00:00 2001 From: luissian Date: Tue, 28 May 2019 23:29:40 +0200 Subject: [PATCH 10/12] Fixing bug when run does not have a valid machine name --- utils/miseq_run_functions.py | 21 ++++++++++++++++++--- 1 file changed, 18 insertions(+), 3 deletions(-) diff --git a/utils/miseq_run_functions.py b/utils/miseq_run_functions.py index 83eaf35..db542ed 100644 --- a/utils/miseq_run_functions.py +++ b/utils/miseq_run_functions.py @@ -261,6 +261,7 @@ def save_new_miseq_run ( experiment_name, run_date, instrument) : ''' logger = logging.getLogger(__name__) logger.debug('Executing the function save_new_miseq_run' ) + logger.info('Saving new Run %s into database', experiment_name) ## create a new entry on runProcess database if Center.objects.filter(centerAbbr__exact = wetlab_config.DEFAULT_CENTER).exists(): center_requested_by = Center.objects.get(centerAbbr__exact = wetlab_config.DEFAULT_CENTER) @@ -276,7 +277,9 @@ def save_new_miseq_run ( experiment_name, run_date, instrument) : logger.info('Updated the run date and sequencer used for the runProcess table ') else: string_message = instrument + ' has been not defined on machines ' - logging_errors(string_message, False, False) + logging_errors(string_message, False, True) + logger.debug('Exiting the function save_new_miseq_run with error' ) + raise ValueError ('Unable to find machine ') run_state = RunStates.objects.get(runStateName__exact = 'Recorded') run_process = RunProcess(runName=experiment_name,sampleSheet= '', @@ -490,6 +493,7 @@ def manage_miseq_in_processing_run (conn, run_name): logger = logging.getLogger(__name__) logger.debug ('Starting function manage_miseq_in_processing_run') experiment_name = run_name.get_run_name() + logger.info('Run %s in processing run', experiment_name) run_folder = RunningParameters.objects.get(runName_id = run_name).get_run_folder() log_folder = os.path.join(wetlab_config.SAMBA_APPLICATION_FOLDER_NAME, run_folder, wetlab_config.RUN_LOG_FOLDER) try: # waiting for sequencer run completion @@ -506,6 +510,7 @@ def manage_miseq_in_processing_run (conn, run_name): run_updated = run_name.set_run_state('Processed Run') run_name.run_finish_date = run_completion_date run_name.save() + logger.info('Run %s updated to processed run', experiment_name) logger.debug ('End function manage_miseq_in_processing_run %s' , experiment_name) return experiment_name except ValueError : @@ -614,6 +619,7 @@ def handle_miseq_run (conn, new_run, l_run_parameter, experiment_name) : ''' logger = logging.getLogger(__name__) logger.debug ('Starting function for handling miSeq run') + logger.info('Fetching info from Folder name %s', new_run) # Fetch run info from remote server l_run_info = os.path.join(wetlab_config.RUN_TEMP_DIRECTORY, wetlab_config.RUN_INFO) s_run_info = os.path.join(wetlab_config.SAMBA_APPLICATION_FOLDER_NAME, new_run,wetlab_config.RUN_INFO) @@ -632,8 +638,17 @@ def handle_miseq_run (conn, new_run, l_run_parameter, experiment_name) : running_parameters, run_date, instrument = miseq_parsing_run_information(l_run_info, l_run_parameter) if not RunProcess.objects.filter(runName__exact = experiment_name).exists(): # Save run data and set run to "Recorded" state - new_run_process = save_new_miseq_run (experiment_name, run_date, instrument) - logger.info ('New RunProcess %s was stored on database', experiment_name) + try: + new_run_process = save_new_miseq_run (experiment_name, run_date, instrument) + logger.info ('New RunProcess %s was stored on database', experiment_name) + except Exception as e : + logging_errors(string_message, True, False) + logger.info('Skiping the run %s , due to the error on saving new run ', new_run) + # deleting temporary copy of RunParameter and RunInfo files + os.remove(l_run_parameter) + os.remove(l_run_info) + logger.info('Deleted RunParameter and RunInfo files') + raise ValueError ('Error when saving new Run in DDBB') # returning to handle next run folder else : new_run_process = RunProcess.objects.get(runName__exact = experiment_name) # Update the running parameter table with the information From fb3199afc32da23a565b4a804679e933f51669c8 Mon Sep 17 00:00:00 2001 From: saramonzon Date: Wed, 29 May 2019 12:39:37 +0200 Subject: [PATCH 11/12] Fix bug when completion file not found for nextSeq run --- cron.py | 6 +++--- utils/nextseq_run_functions.py | 3 ++- utils/update_run_state.py | 14 +++++++------- 3 files changed, 12 insertions(+), 11 deletions(-) diff --git a/cron.py b/cron.py index 119f8ff..0972608 100644 --- a/cron.py +++ b/cron.py @@ -2,7 +2,7 @@ from django.conf import settings #from django.contrib.auth.models import User -from .wetlab_config import * +from iSkyLIMS_wetlab import wetlab_config from .utils.update_run_state import search_update_new_runs, search_not_completed_run from .utils.generic_functions import open_log @@ -51,7 +51,7 @@ def looking_for_new_runs (): logger=open_log(config_file) logger.info('###########---Start Crontab-----############') logger.info('Start searching for new/updating runs') - + new_runs_updated, run_with_error = search_update_new_runs () logger.info('------- Printing summary for search_update_new_runs -----') if len (new_runs_updated) > 0: @@ -126,7 +126,7 @@ def delete_invalid_run (): print ('deleted run' , run_found) all_runs = RunProcess.objects.all() sample_sheet_valid_files = [] - + for run in all_runs: sample_sheet_valid_files.append(os.path.basename(run.get_sample_file())) sample_sheet_folder = os.path.join(settings.MEDIA_ROOT, os.path.dirname(run.get_sample_file())) diff --git a/utils/nextseq_run_functions.py b/utils/nextseq_run_functions.py index df4566f..34e0d08 100644 --- a/utils/nextseq_run_functions.py +++ b/utils/nextseq_run_functions.py @@ -228,7 +228,8 @@ def manage_nextseq_in_processing_run(conn, run_object_name) : except Exception as e: logger.info ('Completion status file still is not present on the run folder') logger.debug ('End function for handling manage_nextseq_in_processing_run waiting Completion file') - raise ValueError ( 'Completion file not present') + #raise Exception ( 'Completion file not present') + return finally : logger.info ('Deleting local copy of completion status') # cleaning up the completion in local temporary file diff --git a/utils/update_run_state.py b/utils/update_run_state.py index 4b328b3..cc64dd0 100644 --- a/utils/update_run_state.py +++ b/utils/update_run_state.py @@ -370,16 +370,16 @@ def search_not_completed_run (): logger.debug('End runs in Sample Sent state') elif state == 'Processing Run': - updated_run['Processing run'] = [] - runs_with_error['Processing run'] = [] + updated_run[state] = [] + runs_with_error[state] = [] logger.debug('Start handling the runs in Processing Run state') for run_in_processing_run in runs_to_handle[state] : run_platform = run_in_processing_run.get_run_platform() try: if 'Next-Seq' in run_platform : - updated_run['Processing run'].append(manage_nextseq_in_processing_run(conn, run_in_processing_run)) + updated_run[state].append(manage_nextseq_in_processing_run(conn, run_in_processing_run)) elif 'Mi-Seq' in run_platform : - updated_run['Processing run'].append(manage_miseq_in_processing_run(conn, run_in_processing_run)) + updated_run[state].append(manage_miseq_in_processing_run(conn, run_in_processing_run)) else: string_message = 'Platform ' + run_platform +' is not supported ' logging_errors (string_message , False, False) @@ -391,12 +391,12 @@ def search_not_completed_run (): logger.debug('End runs in Processing Run state') elif state == 'Processed Run': - updated_run['Processed run'] = [] - runs_with_error['Processed run'] = [] + updated_run[state] = [] + runs_with_error[state] = [] logger.debug('Start handling the runs in Processed Run state') for run_in_processed_run in runs_to_handle[state]: try: - updated_run['Processed run'].append(manage_run_in_processed_run(conn, run_in_processed_run)) + updated_run[state].append(manage_run_in_processed_run(conn, run_in_processed_run)) except : runs_with_error[state].append(run_in_processed_run.get_run_name()) logger.info('Handling the exception to continue with the next item') From f8b72355e6348837c2930833c9f8984bbf2881d8 Mon Sep 17 00:00:00 2001 From: luissian Date: Wed, 19 Jun 2019 18:40:02 +0200 Subject: [PATCH 12/12] fixing bug --- views.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/views.py b/views.py index ee43310..dffd3be 100644 --- a/views.py +++ b/views.py @@ -2923,9 +2923,9 @@ def configuration_test (request): return redirect ('/accounts/login') if request.method=='POST' and request.POST['action'] == 'basicTest': test_results = {} - wetlab_config = os.path.join(settings.BASE_DIR, 'iSkyLIMS_wetlab', 'wetlab_config.py') + wetlab_config_file = os.path.join(settings.BASE_DIR, 'iSkyLIMS_wetlab', 'wetlab_config.py') test_results['iSkyLIMS_settings'] = get_iSkyLIMS_settings() - test_results['config_file'] = get_config_file(wetlab_config) + test_results['config_file'] = get_config_file(wetlab_config_file) test_results['attr_files'] = get_files_attribute(os.path.join(settings.MEDIA_ROOT, 'wetlab')) test_results['database_access'] = check_access_database() test_results['samba_connection'] = check_samba_connection()