Merge pull request #11 from luissian/develop

Refactorization of Analyze schema
BU-ISCIII · Jan 5, 2024 · d212ab4 · d212ab4
2 parents 5a43cc0 + a25365c
commit d212ab4
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Showing 22 changed files with 1,528 additions and 1,593 deletions.
diff --git a/.gitignore b/.gitignore
@@ -90,6 +90,7 @@ venv/
 ENV/
 env.bak/
 venv.bak/
+virtualenv/
 
 # Spyder project settings
 .spyderproject

diff --git a/MANIFEST.in b/MANIFEST.in
@@ -0,0 +1,3 @@
+include LICENSE
+include README.md
+include requirements.txt
diff --git a/analyze_schema.py b/analyze_schema.py
diff --git a/create_schema.py b/create_schema.py
diff --git a/distance_matrix.py b/distance_matrix.py
diff --git a/environment.yml b/environment.yml
@@ -7,10 +7,11 @@ dependencies:
   - conda-forge::python>=3.6
   - conda-forge::biopython==1.72
   - conda-forge::pandas==1.2.4
-  - conda-forge::progressbar==2.5
   - conda-forge::openpyxl==3.0.7
   - conda-forge::plotly==5.0.0
   - conda-forge::numpy==1.20.3
+  - conda-forge::rich==13.7.0
+  - conda-forge::python-kaleido
   - bioconda::prokka>=1.14
   - bioconda::blast>=2.9
   - bioconda::mash>=2