diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index d8bb01c..24cea8c 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -22,12 +22,13 @@ jobs: - name: Verify Conda environment run: conda env list - - name: Run your script + - name: Activate env and install taranis run: | source $CONDA/etc/profile.d/conda.sh conda activate taranis_env - - name: testung analyze schema - run: poetry install + + - name: testing analyze schema + run: taranis analyze-schema -i test/MLST_listeria -o analyze_schema_test --cpus 1 --output-allele-annot --remove-no-cds --remove-duplicated --remove-subset \ No newline at end of file