From ef0f2b77f109c06b6b4bdda7acf9dd49d5b3bdcd Mon Sep 17 00:00:00 2001
From: luissian <chapado.l@gmail.com>
Date: Thu, 25 Jan 2024 17:36:14 +0100
Subject: [PATCH] update installation taranis for testing

---
 .github/workflows/tests.yml | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index d8bb01c..24cea8c 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -22,12 +22,13 @@ jobs:
       - name: Verify Conda environment
         run: conda env list
 
-      - name: Run your script
+      - name: Activate env and install taranis
         run: |
           source $CONDA/etc/profile.d/conda.sh
           conda activate taranis_env
-      - name: testung analyze schema
-        run:
           poetry install
+
+      - name: testing analyze schema
+        run:
           taranis analyze-schema -i  test/MLST_listeria -o analyze_schema_test  --cpus 1 --output-allele-annot --remove-no-cds --remove-duplicated --remove-subset
           
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