Merge Template update for nf-core/tools version 2.11.1 #138

Job	Run time
Run pipeline with test data (23.04.0)	21m 10s
Test workflow parameters (--consensus_caller ivar)	19m 51s
Run pipeline with test data (latest-everything)	20m 46s
Test Nanopore workflow (--gff false)	3m 4s
Test workflow parameters (--variant_caller bcftools --consensus_caller ivar)	19m 55s
Test Nanopore workflow (--input false)	3m 4s
Test workflow parameters (--skip_fastp --skip_pangolin)	20m 51s
Test Nanopore workflow (--min_barcode_reads 10000)	1m 57s
Test SISPA workflow (--gff false)	28s
Test workflow parameters (--skip_variants)	13m 32s
Test Nanopore workflow (--min_guppyplex_reads 10000)	3m 5s
Test SISPA workflow (--genome 'NC_045512.2')	44s
Test workflow parameters (--skip_cutadapt --skip_snpeff)	19m 33s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false)	3m 4s
Test workflow parameters (--skip_kraken2)	21m 5s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...	2m 48s
Test workflow parameters (--skip_assembly)	15m 45s
Test workflow parameters (--spades_mode corona)	20m 12s
Test workflow parameters (--spades_mode metaviral)	21m 22s
Test workflow parameters (--skip_plasmidid false --skip_asciigenome)	21m 21s
	4h 13m 37s

Provide feedback