Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Biaxial plot of genes' expression per cell? #21

Open
innesbre opened this issue Nov 2, 2018 · 0 comments
Open

Biaxial plot of genes' expression per cell? #21

innesbre opened this issue Nov 2, 2018 · 0 comments
Assignees

Comments

@innesbre
Copy link
Member

innesbre commented Nov 2, 2018

Sonya's immunology buddies asked if genes could be viewed on a biaxial plot, a la FACS analysis. Given that each cell library is an incomplete (~10%) sample of that cell's transcriptome, this probably isn't the greatest idea, since most cells will pile up on one/both axes since the genes of interest will be missing. However, it could be done, and colour each cell by cluster, as well as including a meta-dot (with whiskers for IQR/SE/SD?) for cluster-wise average gene expression. This might be a way to move toward the "cell-type signature" idea of having multiple genes uniquely representing a cluster, rather than just single marker genes.

@innesbre innesbre self-assigned this Nov 2, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant