run_pytests.yaml

name: paquo ci

on:
  push:
    branches:
      - main
    tags: v[0-9]+.[0-9]+.[0-9]+
  pull_request: {}

env:
  QUPATH_VERSION: 0.5.0

jobs:
  # RUN PYTEST ON PAQUO SOURCE
  tests:
    name: pytest ${{ matrix.os }}::py${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}
    strategy:
      max-parallel: 8
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ["3.12"]
        include:
          # we'll test the python support on ubuntu
          - os: ubuntu-latest
            python-version: '3.11'
          - os: ubuntu-latest
            python-version: '3.12'
          - os: ubuntu-latest
            python-version: '3.9'
          - os: ubuntu-latest
            python-version: '3.8'
    steps:
    - uses: actions/checkout@v3
      with:
        fetch-depth: 0
    - name: Setup Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install paquo
      run: |
        python -m pip install --upgrade pip
        pip install -e .[dev]
    - name: Restore qupath cache
      uses: actions/cache@v3
      env:
        CACHE_NUMBER: 0
      with:
        path: ./qupath/download
        key: ${{ runner.os }}-qupath-v${{ env.CACHE_NUMBER }}
    - name: Install qupath and set PAQUO_QUPATH_DIR
      shell: bash
      run: |
        python -c "import os; os.makedirs('qupath/download', exist_ok=True)"
        python -c "import os; os.makedirs('qupath/apps', exist_ok=True)"
        python -m paquo get_qupath --install-path ./qupath/apps --download-path ./qupath/download ${{ env.QUPATH_VERSION }} | grep -v "^#" | sed "s/^/PAQUO_QUPATH_DIR=/" >> $GITHUB_ENV
    - name: Test with pytest
      run: |
        pytest --cov=./paquo --cov-report=xml
    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v3
      with:
        name: paquo

  # RUN MYPY STATIC TYPE ANALYSIS ON PAQUO SOURCE
  typing:
    name: mypy type analysis
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.8
      - name: Install dependencies
        shell: bash
        run: |
          python -m pip install --upgrade pip
          pip install -e .[dev]
          pip install ome_types || true
      - name: Run mypy
        run: |
          mypy paquo

  # DEPLOY PAQUO TO TEST.PYPI ON SUCCESS
  testdeploy:
    needs: [tests, typing]
    name: deploy to test.pypi
    runs-on: ubuntu-latest
    if: github.event_name == 'push' && github.ref == 'refs/heads/main'
    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.8
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
      - name: Install pep517
        run: >-
          python -m
          pip install
          pep517
          --user
      # we'll have to remove local_scheme for pushes to test.pypi pep440
      - name: Get version without local_scheme
        id: non_local_version
        run: |
          python setup.py --version | awk -F+ '{print "::set-output name=version::"$1}'
      - name: Build a binary wheel and a source tarball
        env:
          SETUPTOOLS_SCM_PRETEND_VERSION: ${{ steps.non_local_version.outputs.version }}
        run: >-
          python -m
          pep517.build
          --source
          --binary
          --out-dir dist/
          .
      # push all versions on master to test.pypi.org
      - name: Publish package to TestPyPI
        continue-on-error: true
        uses: pypa/gh-action-pypi-publish@master
        with:
          user: __token__
          password: ${{ secrets.test_pypi_password }}
          repository_url: https://test.pypi.org/legacy/

  # DEPLOY PAQUO TO PYPI ON SUCCESS
  deploy:
    needs: [tests, typing]
    name: deploy to pypi
    runs-on: ubuntu-latest
    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.8
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
      - name: Install pep517
        run: >-
          python -m
          pip install
          pep517
          --user
      - name: Build a binary wheel and a source tarball
        run: >-
          python -m
          pep517.build
          --source
          --binary
          --out-dir dist/
          .
      # push all tagged versions to pypi.org
      - name: Publish package to PyPI
        uses: pypa/gh-action-pypi-publish@master
        with:
          user: __token__
          password: ${{ secrets.pypi_password }}