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Missing GTF file path #7

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ag1805x opened this issue Mar 22, 2021 · 1 comment
Open

Missing GTF file path #7

ag1805x opened this issue Mar 22, 2021 · 1 comment

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@ag1805x
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ag1805x commented Mar 22, 2021

The make_hg38_tran.sh file for UCSC hg38 genome_tran Hisat2 index (https://genome-idx.s3.amazonaws.com/hisat/hg38_tran.tar.gz) does not contain the path from which GTF file has been obtained.

UCSC_HG38_GTF_BASE is undefined.

Though the desired GTF file is included with the index, the source is not clear.
@BenLangmead
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Could someone in your group comment, @DaehwanKimLab?

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@BenLangmead @ag1805x