diff --git a/doc/website/recent_news.ssi b/doc/website/recent_news.ssi
index e4fce9fa..609b0b0b 100644
--- a/doc/website/recent_news.ssi
+++ b/doc/website/recent_news.ssi
@@ -1,3 +1,12 @@
+
LevioSAM paper and indel-aware major allele references - June 4, 2021
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+ - The levioSAM paper is out in the journal Bioinformatics
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- LevioSAM is a tool that rapidly "lifts" alignments between reference genomes related through a VCF file.
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- LevioSAM makes it easy to align to one reference with Bowtie 2 (or other aligner), then immediately translate the alignments to a different coordinate system
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- As a demonstration, we are adding new major-allele versions of human references (GRCh38 and h19) that contain both major-allele SNVs and major-allele (small) indels. Because they include indels, these are more comprehensive than the SNV-only major-allele reference we released previously. LevioSAM provides the ability to translate the alignments back to the original (indel-less) references immediately after. These are in the "Indexes" sidebar on the right.
+
- Detailed instructions on using levioSAM+Bowtie2 in this context are available in the levioSAM repo README.md
+
+
Version 2.4.4 - May 23, 2021
- Fixed an issue that would sometimes cause deadlocks in
bowtie2
when running multithreaded
diff --git a/doc/website/rhsidebar.ssi b/doc/website/rhsidebar.ssi
index 70c7e9b4..cd4299ce 100644
--- a/doc/website/rhsidebar.ssi
+++ b/doc/website/rhsidebar.ssi
@@ -64,14 +64,28 @@
- H. sapiens, GRCh38 + major SNVs
+ H. sapiens, GRCh38 + major SNVs
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NCBI+1KG
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- How we built this, FASTA
+ | How we built this, FASTA
+ |
+
+
+
+
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+ H. sapiens, GRCh38 + major SNVs & indels
+ |
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+ NCBI+1KG
+ |
+
+
+ How we built this, Use with levioSAM, FASTA
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@@ -120,6 +134,34 @@
+
+
+
+ H. sapiens, hg19 + major SNVs
+ |
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+ UCSC+1KG
+ |
+
+
+ How we built this, FASTA
+ |
+
+
+
+
+
+ H. sapiens, hg19 + major SNVs & indels
+ |
+
+ UCSC+1KG
+ |
+
+
+ How we built this, Use with levioSAM, FASTA
+ |
+
+
H. sapiens, hg18
|