Building issues #479
Comments
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This is a build issue, not an installation issue. |
Have edited the title to reflect this. Thanks |
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@analkumar2 can you try the windows_build (https://github.com/subhacom/moose-core/tree/windows_build) branch please. We are considering switching to this for better build-automation. |
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Trying to install it again on a fresh system. Will update once done
…On Fri, 23 Aug, 2024, 10:46 am subhacom, ***@***.***> wrote:
@analkumar2 <https://github.com/analkumar2> can you try the windows_build
(https://github.com/subhacom/moose-core/tree/windows_build) branch
please. We are considering switching to this for better build-automation.
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<#479 (comment)>,
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Dear Subhasis,
Currently, the error I get while importing moose in python3.10 on native
windows is - ModuleNotFoundError: No module named 'moose._moose'
I'll figure out what I am doing wrong tomorrow. Thank you,
…On Fri, Aug 23, 2024 at 6:34 PM Anal Kumar ***@***.***> wrote:
Trying to install it again on a fresh system. Will update once done
On Fri, 23 Aug, 2024, 10:46 am subhacom, ***@***.***> wrote:
> @analkumar2 <https://github.com/analkumar2> can you try the
> windows_build (https://github.com/subhacom/moose-core/tree/windows_build)
> branch please. We are considering switching to this for better
> build-automation.
>
> —
> Reply to this email directly, view it on GitHub
> <#479 (comment)>,
> or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/ABZZVNPVSZSBQ6VOCNKLTOLZS3ARFAVCNFSM6AAAAABIXIGRQSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMBWGMYDQMZZGU>
> .
> You are receiving this because you were mentioned.Message ID:
> ***@***.***>
>
--
Anal Kumar
Research Scholar, Ph.D.
National Centre for Biological Sciences
Bengaluru
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Dear Subhasis,
The current version is not installing. When I try using python3 -m pip
install . it throws the following error:
…___________________________________________________________________
LINK : fatal error LNK1104: cannot open file 'python312.lib'
ninja: build stopped: subcommand failed.
INFO: autodetecting backend as ninja
INFO: calculating backend command to run:
C:\Users\analk\micromamba\envs\moose\Library\bin\ninja.EXE -j4
[end of output]
note: This error originates from a subprocess, and is likely not a
problem with pip.
error: metadata-generation-failed
______________________________________________________________________
When I try the meson method and add _build_install to PYTHONPATH, it fails
at the importing stage with the error message:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"C:\Users\analk\moose-core\_build_install\Lib\site-packages\moose\__init__.py",
line 21, in <module>
import moose._moose as _moose
ModuleNotFoundError: No module named 'moose._moose'
Thank you,
On Fri, Aug 23, 2024 at 11:24 PM Anal Kumar ***@***.***> wrote:
Dear Subhasis,
Currently, the error I get while importing moose in python3.10 on native
windows is - ModuleNotFoundError: No module named 'moose._moose'
I'll figure out what I am doing wrong tomorrow. Thank you,
On Fri, Aug 23, 2024 at 6:34 PM Anal Kumar ***@***.***> wrote:
> Trying to install it again on a fresh system. Will update once done
>
> On Fri, 23 Aug, 2024, 10:46 am subhacom, ***@***.***>
> wrote:
>
>> @analkumar2 <https://github.com/analkumar2> can you try the
>> windows_build (https://github.com/subhacom/moose-core/tree/windows_build)
>> branch please. We are considering switching to this for better
>> build-automation.
>>
>> —
>> Reply to this email directly, view it on GitHub
>> <#479 (comment)>,
>> or unsubscribe
>> <https://github.com/notifications/unsubscribe-auth/ABZZVNPVSZSBQ6VOCNKLTOLZS3ARFAVCNFSM6AAAAABIXIGRQSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMBWGMYDQMZZGU>
>> .
>> You are receiving this because you were mentioned.Message ID:
>> ***@***.***>
>>
>
--
Anal Kumar
Research Scholar, Ph.D.
National Centre for Biological Sciences
Bengaluru
--
Anal Kumar
Research Scholar, Ph.D.
National Centre for Biological Sciences
Bengaluru
|
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Dear Subhasis,
The current version is working perfectly. I had multiple versions of python
installed and I made the mistake of installing it in one version and
importing moose in another. I checked a few rdesigneur tutorials and they
were working as expected.
I used python -m pip install . to install moose.
Thank you,
…On Mon, Aug 26, 2024 at 3:45 PM Anal Kumar ***@***.***> wrote:
Dear Subhasis,
The current version is not installing. When I try using python3 -m pip
install . it throws the following error:
___________________________________________________________________
LINK : fatal error LNK1104: cannot open file 'python312.lib'
ninja: build stopped: subcommand failed.
INFO: autodetecting backend as ninja
INFO: calculating backend command to run:
C:\Users\analk\micromamba\envs\moose\Library\bin\ninja.EXE -j4
[end of output]
note: This error originates from a subprocess, and is likely not a
problem with pip.
error: metadata-generation-failed
______________________________________________________________________
When I try the meson method and add _build_install to PYTHONPATH, it fails
at the importing stage with the error message:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"C:\Users\analk\moose-core\_build_install\Lib\site-packages\moose\__init__.py",
line 21, in <module>
import moose._moose as _moose
ModuleNotFoundError: No module named 'moose._moose'
Thank you,
On Fri, Aug 23, 2024 at 11:24 PM Anal Kumar ***@***.***> wrote:
> Dear Subhasis,
> Currently, the error I get while importing moose in python3.10 on native
> windows is - ModuleNotFoundError: No module named 'moose._moose'
> I'll figure out what I am doing wrong tomorrow. Thank you,
>
> On Fri, Aug 23, 2024 at 6:34 PM Anal Kumar ***@***.***> wrote:
>
>> Trying to install it again on a fresh system. Will update once done
>>
>> On Fri, 23 Aug, 2024, 10:46 am subhacom, ***@***.***>
>> wrote:
>>
>>> @analkumar2 <https://github.com/analkumar2> can you try the
>>> windows_build (
>>> https://github.com/subhacom/moose-core/tree/windows_build) branch
>>> please. We are considering switching to this for better build-automation.
>>>
>>> —
>>> Reply to this email directly, view it on GitHub
>>> <#479 (comment)>,
>>> or unsubscribe
>>> <https://github.com/notifications/unsubscribe-auth/ABZZVNPVSZSBQ6VOCNKLTOLZS3ARFAVCNFSM6AAAAABIXIGRQSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMBWGMYDQMZZGU>
>>> .
>>> You are receiving this because you were mentioned.Message ID:
>>> ***@***.***>
>>>
>>
>
> --
> Anal Kumar
> Research Scholar, Ph.D.
> National Centre for Biological Sciences
> Bengaluru
>
--
Anal Kumar
Research Scholar, Ph.D.
National Centre for Biological Sciences
Bengaluru
--
Anal Kumar
Research Scholar, Ph.D.
National Centre for Biological Sciences
Bengaluru
|
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Can you please check the squid demo? Just running |
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Dear Subhasis,
It is not working in my system either. Some qt4 issues.
…On Tue, 27 Aug, 2024, 11:38 am subhacom, ***@***.***> wrote:
Can you please check the squid demo? Just running squid.py in that folder
should plot spikes from default current injection. Somehow that is not
working on my MS Windows system, though it works on Ubuntu via WSL.
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<#479 (comment)>,
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Dear Subhasis,
I faced another issue. The ion channel fields are not being filled properly
when using rdesigneur. For example, *ex3.0_squid_currentPulse.py
<http://ex3.0_squid_currentPulse.py>* is giving different output in windows
and linux.
When I do moose.showfield('model/elec/soma/Na'), it gives the following
nonsensical values:
[/model[0]/elec[0]/soma[0]/Na]
Ek =0.0
Gbar =0.0
Gk =0.0009424777960769378
Ik =0.0
X =7.271749017293009e+228
Xpower =0.0009424777960769378
Y =6.013470016999068e-154
Ypower =6.013470016999068e-154
Z =0.0
Zpower =0.0
className =ZombieHHChannel
dt =0.0
fieldIndex =0
idValue =466
index =0
instant =0
modulation =0.0
name =Na
numData =1
numField =1
path =/model[0]/elec[0]/soma[0]/Na[0]
tick =-2
useConcentration =0
Thank you,
…On Tue, Aug 27, 2024 at 12:36 PM Anal Kumar ***@***.***> wrote:
Dear Subhasis,
It is not working in my system either. Some qt4 issues.
On Tue, 27 Aug, 2024, 11:38 am subhacom, ***@***.***> wrote:
> Can you please check the squid demo? Just running squid.py in that
> folder should plot spikes from default current injection. Somehow that is
> not working on my MS Windows system, though it works on Ubuntu via WSL.
>
> —
> Reply to this email directly, view it on GitHub
> <#479 (comment)>,
> or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/ABZZVNIDMOFAAA3U5T77BRTZTQJWJAVCNFSM6AAAAABIXIGRQSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMJRGY2DQOJSGE>
> .
> You are receiving this because you were mentioned.Message ID:
> ***@***.***>
>
--
Anal Kumar
Research Scholar, Ph.D.
National Centre for Biological Sciences
Bengaluru
|
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Yes, I already posted it: #483 |
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Fixed in #485 |
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A build on a fresh Ubuntu 22.04.4 with Python 3.10.12 required some extra steps that could be included in the setup.py or the cmake files.
export pybind11_DIR=$(python3 -c "import pybind11; print(pybind11.get_cmake_dir())")
The text was updated successfully, but these errors were encountered: