DESCRIPTION

Package: imputomics
Type: Package
Title: The Most Robust Wrapper for Missing Values Imputation in ‘Omics’ Data
Version: 0.1.3
Authors@R: c(
          person("Michał", "Burdukiewicz", ,
               email = "michalburdukiewicz@gmail.com",
               comment = c(ORCID = "0000-0001-8926-582X"),
               role = c("aut", "cre")),
          person("Krystyna", "Grzesiak", 
               email = "krygrz11@gmail.com", 
               comment = c(ORCID = "0000-0003-2581-7722"),
               role = c("aut", "ctb")),
          person("Jarosław", "Chilimoniuk", 
               email = "jaroslaw.chilimoniuk@gmail.com", 
               comment = c(ORCID = "0000-0001-5467-018X"),
               role = c("aut", "ctb")),
          person("Jakub", "Kołodziejczyk", 
               email = "kolodziejczykjakub.mail@gmail.com",
               comment = c(ORCID = "0000-0002-7187-6988"),
               role = c("aut", "ctb")),
          person("Dominik", "Nowakowski", 
               email = "nowakowskisf@gmail.com", 
               comment = c(ORCID = "0000-0002-3515-4320"),
               role = c("aut", "ctb"))
        )
Description: Offers a range of methods for simulating and imputing missing values 
             in different types of omics data such as genomics, transcriptomics, 
             proteomics, and metabolomics. Provides tools for comparing and 
             evaluating the performance of imputation methods in the terms of 
             accuracy and computation time.
License: GPL-3
Encoding: UTF-8
VignetteBuilder: knitr
Depends: R (>= 4.2)
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE)
URL: https://biogenies.info/imputomics/,
    http://biogenies.info/imputomics/
BugReports: https://github.com/biogenies/imputomics/issues
Imports:
    Amelia,
    bcv,
    glmnet,
    pcaMethods (>= 1.92.0),
    GMSimpute,
    checkmate,
    graphics,
    shiny,
    ggplot2,
    dplyr,
    ggbeeswarm,
    patchwork,
    Hmisc,
    tidyr,
    imputation (>= 2.0.3),
    impute (>= 1.74.0),
    imputeLCMD,
    MAI (>= 1.3.0),
    MetabImpute (>= 0.1.0),
    methods,
    mice,
    missCompare,
    missForest,
    missMDA,
    NMF (>= 0.30.4.900),
    PEMM (>= 1.0),
    Rdpack,
    R.utils,
    SimDesign,
    softImpute,
    truncnorm,
    VIM,
    Biobase (>= 2.60.0),
    TimeProjection (>= 0.2.0),
    DreamAI (>= 0.1.0)
Suggests:
    abind,
    beeswarm,
    knitr,
    testthat,
    matrixStats,
    randomForest,
    spelling,
    openxlsx,
    rmarkdown,
    callr,
    shinythemes,
    shinyWidgets,
    shinycssloaders,
    DT,
    shinyhelper,
    colourpicker,
    ggvenn
Language: en-US
RdMacros: Rdpack
LazyData: true
Remotes: 
    bioc::Biobase,
    url::https://cran.r-project.org/src/contrib/Archive/PEMM/PEMM_1.0.tar.gz,
    bioc::impute,
    url::https://cran.r-project.org/src/contrib/Archive/TimeProjection/TimeProjection_0.2.0.tar.gz,
    github::jeffwong/imputation,
    github::WangLab-MSSM/DreamAI/Code,
    bioc::pcaMethods,
    github::KechrisLab/MAI,
    github::BeanLabASU/metabimpute,
    github::renozao/NMF@devel