Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error with dhcp-structural-pipeline:fetal in docker #17

Open
Thea-Eddie-Amy opened this issue Feb 20, 2021 · 0 comments
Open

Error with dhcp-structural-pipeline:fetal in docker #17

Thea-Eddie-Amy opened this issue Feb 20, 2021 · 0 comments

Comments

@Thea-Eddie-Amy
Copy link

Hi,
I was trying to use the dhcp-structural-pipeline:fetal (in docker) to segment fetal brain. I ran the command as follows:
xuxinyi@DESKTOP-LFK9GOB:/mnt/c/Users/lenovoM425/Desktop/segment-fetal$ docker run dhcp-segmentation-pipeline:fetal 25w1wpp.nii.gz 25 25w1wpp.nii.gz does not exist! xuxinyi@DESKTOP-LFK9GOB:/mnt/c/Users/lenovoM425/Desktop/segment-fetal$ docker run dhcp-segmentation-pipeline:fetal $PWD/25w1wpp.nii.gz 25 /mnt/c/Users/lenovoM425/Desktop/segment-fetal/25w1wpp.nii.gz does not exist! xuxinyi@DESKTOP-LFK9GOB:/mnt/c/Users/lenovoM425/Desktop/segment-fetal$ docker run -v $PWD/data:/data dhcp-segmentation-p ipeline:fetal data/25w1wpp.nii.gz 25 data/25w1wpp.nii.gz does not exist!

25w1wpp.nii.gz is both in the $PWD and the $PWD/data, however each way gets the error "file does not exist!".
Please help! Thanks!

image
image
image

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant