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Releases: Bioconductor/BiocManager

CRAN Release v1.30.15

12 May 20:00
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CHANGES IN VERSION 1.30.15

BUG FIXES

o `.skip_if_misconfigured` function should work with
  `_R_CHECK_DEPENDS_ONLY=true`
o Switch to `interactive()` only examples for `available()`

CRAN Release v1.30.14

12 May 20:01
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CHANGES IN VERSION 1.30.14

BUG FIXES

o `install` now passes the `force` argument to `install_github`
  (#101, @lgeistlinger)
o Treat warnings as warnings internally in `install.packages()`
  (#100, @biobenkj)
o Check version validity `.onAttach` rather than `.onLoad`

CRAN Release v1.30.13

12 May 20:00
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CHANGES IN VERSION 1.30.13


NEW FEATURES

o Downloading the same version of a remote package already installed will
  be avoided unless the user supplies `force=TRUE` to `install`.

USER VISIBLE CHANGES

o Devel users on a newer version of R will not get an error when the minor
  version of R is +1 of the recommended

BUG FIXES

o Added a warning and informative message when a package is 'not available'
  (#85, @LTLA).
o `BIOCONDUCTOR_CONFIG_FILE` now included in the documentation for
  `install` (#93, @glin).

Do Not Use

CRAN Release v1.30.12

31 Mar 15:16
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CHANGES IN VERSION 1.30.12

NEW FEATURES

o 'BIOCONDUCTOR_CONFIG_FILE' option allows users to provide an offline
  and local configuration file (config.yaml) for version validation.

o Bioconductor 'BioCbooks' repository now available in Bioconductor
  versions >= "3.12"

USER VISIBLE CHANGES

o Enable use of historical snapshots ('MRAN' or 'RSPM' via
  `options(BiocManager.snapshots=)`) to install CRAN packages for
  out-of-date Bioconductor versions.

o Respect `options(repos = c(CRAN = "..."))`. See
  https://github.com/Bioconductor/BiocManager/issues/69

BUG FIXES

o Increase timeout from 1 to 5 minutes (300 seconds) to make
  download of large packages more robust.

CRAN Release v1.30.10

18 Nov 14:07
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CHANGES IN VERSION 1.30.10

MINOR CHANGES

o Restore startup message with recommended version

o Update mis-configuration skip in tests

CRAN Release v1.30.9

22 Oct 22:38
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CHANGES IN VERISON 1.30.9

MINOR CHANGES

o Use `packageStartupMessage()` in .onLoad

o Tests are robust to missing Suggests: BiocVersion

CRAN Release v1.30.8

15 Oct 22:55
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CHANGES IN VERSION 1.30.8

MINOR CHANGES

o Tests are skipped if is there is a misconfiguration or the CRAN
  builder has no internet access.

CRAN Release v1.30.7

07 Oct 15:37
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CHANGES IN VERSION 1.30.7

NEW FEATURES

* Support R-4.0

MINOR CHANGES

* Conform to CRAN policy to fail with messages rather than
  warnings or errors when internet access fails; internet access
  failures continue to generate warnings or errors during regular
  use.

CHANGES IN VERSION 1.30.6

MINOR CHANGES

* Improve unit tests under Bioconductor versions 3.8, 3.9, 3.10.

* Improve error message when non-interactive version update fails.

BUG FIXES

* BiocManager loads when off-line.

CRAN Release v1.30.5

07 Oct 15:35
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CHANGES IN VERSION 1.30.5


NEW FEATURES

  • Allow users to specify checkBuilt when invoking valid() or
    install(). Set default FALSE.

MINOR CHANGES

  • Allow use of BiocInstaller for R < 3.5, pointing to biocLite()
    when appropriate.
  • Improve performance of version checking (#42 @HenrikBengtsson).
  • Document off-line installation best practices.
  • Warn about out-of-date packages on load (in addition to on
    attach) (#29)

CRAN Release v1.30.4

12 Nov 18:46
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CHANGES IN VERSION 1.30.4


NEW FEATURES

  • Provide an 'http' fallback when 'https' fails for accessing the version
    map hosted on Bioconductor.org

MINOR CHANGES

  • Conform tests to devel and release R versions
  • Add tests for the 'http' fallback scenarios

BUG FIXES

  • Fixed issue with multiple error version messages for Bioc version 3.9
    'devel' and 'future'
  • Return a warning message instead of an error when unable to validate
    a given version