Releases: Bioconductor/BiocManager
Releases · Bioconductor/BiocManager
CRAN Release v1.30.15
CHANGES IN VERSION 1.30.15
BUG FIXES
o `.skip_if_misconfigured` function should work with
`_R_CHECK_DEPENDS_ONLY=true`
o Switch to `interactive()` only examples for `available()`
CRAN Release v1.30.14
CHANGES IN VERSION 1.30.14
BUG FIXES
o `install` now passes the `force` argument to `install_github`
(#101, @lgeistlinger)
o Treat warnings as warnings internally in `install.packages()`
(#100, @biobenkj)
o Check version validity `.onAttach` rather than `.onLoad`
CRAN Release v1.30.13
CHANGES IN VERSION 1.30.13
NEW FEATURES
o Downloading the same version of a remote package already installed will
be avoided unless the user supplies `force=TRUE` to `install`.
USER VISIBLE CHANGES
o Devel users on a newer version of R will not get an error when the minor
version of R is +1 of the recommended
BUG FIXES
o Added a warning and informative message when a package is 'not available'
(#85, @LTLA).
o `BIOCONDUCTOR_CONFIG_FILE` now included in the documentation for
`install` (#93, @glin).
Do Not Use
CRAN Release v1.30.12
CHANGES IN VERSION 1.30.12
NEW FEATURES
o 'BIOCONDUCTOR_CONFIG_FILE' option allows users to provide an offline
and local configuration file (config.yaml) for version validation.
o Bioconductor 'BioCbooks' repository now available in Bioconductor
versions >= "3.12"
USER VISIBLE CHANGES
o Enable use of historical snapshots ('MRAN' or 'RSPM' via
`options(BiocManager.snapshots=)`) to install CRAN packages for
out-of-date Bioconductor versions.
o Respect `options(repos = c(CRAN = "..."))`. See
https://github.com/Bioconductor/BiocManager/issues/69
BUG FIXES
o Increase timeout from 1 to 5 minutes (300 seconds) to make
download of large packages more robust.
CRAN Release v1.30.10
CHANGES IN VERSION 1.30.10
MINOR CHANGES
o Restore startup message with recommended version
o Update mis-configuration skip in tests
CRAN Release v1.30.9
CHANGES IN VERISON 1.30.9
MINOR CHANGES
o Use `packageStartupMessage()` in .onLoad
o Tests are robust to missing Suggests: BiocVersion
CRAN Release v1.30.8
CHANGES IN VERSION 1.30.8
MINOR CHANGES
o Tests are skipped if is there is a misconfiguration or the CRAN
builder has no internet access.
CRAN Release v1.30.7
CHANGES IN VERSION 1.30.7
NEW FEATURES
* Support R-4.0
MINOR CHANGES
* Conform to CRAN policy to fail with messages rather than
warnings or errors when internet access fails; internet access
failures continue to generate warnings or errors during regular
use.
CHANGES IN VERSION 1.30.6
MINOR CHANGES
* Improve unit tests under Bioconductor versions 3.8, 3.9, 3.10.
* Improve error message when non-interactive version update fails.
BUG FIXES
* BiocManager loads when off-line.
CRAN Release v1.30.5
CHANGES IN VERSION 1.30.5
NEW FEATURES
- Allow users to specify
checkBuilt
when invokingvalid()
or
install()
. Set defaultFALSE
.
MINOR CHANGES
- Allow use of BiocInstaller for R < 3.5, pointing to biocLite()
when appropriate. - Improve performance of version checking (#42 @HenrikBengtsson).
- Document off-line installation best practices.
- Warn about out-of-date packages on load (in addition to on
attach) (#29)
CRAN Release v1.30.4
CHANGES IN VERSION 1.30.4
NEW FEATURES
- Provide an 'http' fallback when 'https' fails for accessing the version
map hosted on Bioconductor.org
MINOR CHANGES
- Conform tests to devel and release R versions
- Add tests for the 'http' fallback scenarios
BUG FIXES
- Fixed issue with multiple error version messages for Bioc version
3.9
'devel' and 'future' - Return a warning message instead of an error when unable to validate
a given version