scHiCcompare

[hamy12398]

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• Repository: https://github.com/dozmorovlab/scHiCcompare

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[bioc-issue-bot]

Hi @hamy12398

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: scHiCcompare
Title: Differential Analysis of Single-cell Hi-C Data
Version: 0.99.0
Authors@R: c(
    person(given = "My", family = "Nguyen",
 email = "[email protected]",
 role = c("aut"),
 comment = c(ORCID = "0009-0003-1118-7085")),
    person(given = "Mikhail",
 family = "Dozmorov",
 role = c("aut", "cre"),
 email = "[email protected]",
 comment = c(ORCID = "0000-0002-0086-8358")))
Description: This package provides functions for differential chromatin interaction analysis 
    between two single-cell Hi-C data groups. It includes tools for imputation, normalization, 
    and differential analysis of chromatin interactions. The package implements pooling techniques 
    for imputation and offers methods to normalize and test for differential interactions across 
    single-cell Hi-C datasets.
Imports: 
    DT,
    data.table,
    dplyr,
    ggplot2,
    gtools,
    HiCcompare,
    lattice,
    mclust,
    mice,
    miceadds,
    rstatix,
    tidyr,
    gridExtra
Suggests: knitr,
    rmarkdown,
    testthat,
    BiocStyle
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.2
Depends: R (>= 4.2.0)
VignetteBuilder: knitr
biocViews: Software, SingleCell, HiC, Sequencing, Normalization
BugReports: https://github.com/dozmorovlab/ScHiCcompare/issues
URL: https://github.com/dozmorovlab/ScHiCcompare

[bioc-issue-bot]

Your package has been added to git.bioconductor.org to continue the
pre-review process. A build report will be posted shortly. Please
fix any ERROR and WARNING in the build report before a reviewer is
assigned or provide a justification on why you feel the ERROR or
WARNING should be granted an exception.

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[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

On one or more platforms, the build results were: "ERROR".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
Linux (Ubuntu 24.04.1 LTS): scHiCcompare_0.99.0.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/scHiCcompare to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

[lshep]

Please fix the ERROR and do a valid version bump to get a new build report before a reviewer will be assigned

[bioc-issue-bot]

Received a valid push on git.bioconductor.org; starting a build for commit id: ecbec6d826f3b4d4896cb4f87bae3155887e4a6c

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

On one or more platforms, the build results were: "TIMEOUT, skipped".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
ERROR before build products produced.

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/scHiCcompare to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.