BCalm

[visze]

Update the following URL to point to the GitHub repository of
the package you wish to submit to Bioconductor

• Repository: https://github.com/kircherlab/BCalm

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[bioc-issue-bot]

Hi @visze

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: BCalm
Version: 0.99.0
Title: Barcode Analysis using linear models
Description: Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).
Authors@R: c(
      person("Pia", "Keukeleire", role = c("cre", "aut"), email = "[email protected]"),
      person("Martin", "Kircher", role = "aut"))
Depends:
      R (>= 3.5),
      methods,
      BiocGenerics,
      SummarizedExperiment,
      limma,
      curl
Suggests:
      BiocStyle,
      knitr,
      rmarkdown,
      RUnit,
      testthat (>= 3.0.0),
      ggplot2,
      kableExtra
Imports:
      mpra,
      S4Vectors,
      scales,
      stats,
      graphics,
      statmod,
      tidyr,
      GenomeInfoDb,
      IRanges,
      GenomicRanges,
      Biobase,
      DelayedArray
Collate:
      mpra_set.R
      utils.R
      fit.R
      preprocess.R
      analyze.R
VignetteBuilder: knitr
License: MIT
URL: https://github.com/kircherlab/BCalm
BugReports: https://github.com/kircherlab/BCalm/issues
biocViews: Software, GeneRegulation, Sequencing, FunctionalGenomics
Config/testthat/edition: 3
LazyData: true

[lshep]

Please remove vignette/BCalm.html as this should be generated automatically with
R CMD build.

[bioc-issue-bot]

Your package has been added to git.bioconductor.org to continue the
pre-review process. A build report will be posted shortly. Please
fix any ERROR and WARNING in the build report before a reviewer is
assigned or provide a justification on why you feel the ERROR or
WARNING should be granted an exception.

IMPORTANT: Please read this documentation for setting
up remotes to push to git.bioconductor.org. All changes should be
pushed to git.bioconductor.org moving forward. It is required to push a
version bump to git.bioconductor.org to trigger a new build report.

Bioconductor utilized your github ssh-keys for git.bioconductor.org
access. To manage keys and future access you may want to active your
Bioconductor Git Credentials Account

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

On one or more platforms, the build results were: "ERROR".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
Linux (Ubuntu 24.04.1 LTS): BCalm_0.99.0.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/BCalm to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

[lshep]

All ERROR's must be corrected before a reviewer will be assigned.

[visze]

Thanks @lshep We are working on it fixing them!