DESCRIPTION

Package: pwalign
Title: Perform pairwise sequence alignments
Description: The two main functions in the package are pairwiseAlignment() and
	stringDist(). The former solves (Needleman-Wunsch) global alignment,
	(Smith-Waterman) local alignment, and (ends-free) overlap alignment
	problems. The latter computes the Levenshtein edit distance or pairwise
	alignment score matrix for a set of strings.
biocViews: Alignment, SequenceMatching, Sequencing, Genetics
URL: https://bioconductor.org/packages/pwalign
BugReports: https://github.com/Bioconductor/pwalign/issues
Version: 1.3.1
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Patrick", "Aboyoun", role="aut"),
	person("Robert", "Gentleman", role="aut"),
	person("Hervé", "Pagès", role="cre",
	       email="hpages.on.github@gmail.com"))
Depends: BiocGenerics, S4Vectors, IRanges, Biostrings (>= 2.71.5)
Imports: methods, utils
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
Enhances: Rmpi
Suggests: RUnit
Collate: 00datacache.R
	utils.R
	InDel-class.R
	AlignedXStringSet-class.R
	PairwiseAlignments-class.R
	PairwiseAlignmentsSingleSubject-class.R
	PairwiseAlignments-io.R
	align-utils.R
	pid.R
	substitution_matrices.R
	pairwiseAlignment.R
	stringDist.R
	zzz.R