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Reproduction:
from morphio import Morphology from neurom import load_morphology from neurom.check import morphology_checks # morphology_id: https://bbp.epfl.ch/neurosciencegraph/data/neuronmorphologies/ec4d9eae-5e0a-4409-a45d-ec5ec6dc3223 # morphology_self: https://bbp.epfl.ch/nexus/v1/resources/bbp-external/seu/_/https:%2F%2Fbbp.epfl.ch%2Fneurosciencegraph%2Fdata%2Fneuronmorphologies%2Fec4d9eae-5e0a-4409-a45d-ec5ec6dc3223 swc_path = ".../18455_00141.swc" morphology = load_morphology(Morphology(swc_path), process_subtrees=True) for neurite in morphology.neurites: r = neurite.root_node.points print(len(r)) # OUTPUT # 104 # 9 # 467 # 58 # 6 # 25 # 23 # 1 # 1 # 3 # 132 fail = morphology_checks.has_no_narrow_start(morphology, frac=0.9)
Should all neurites' root node have at least 2 points?
The text was updated successfully, but these errors were encountered:
Sorry for the long delay, other things have had priority.
Yes, that is an invariant in MorphIO, it seems it's been broken. I have a fix here: BlueBrain/MorphIO#516 You can get the artifcats here: https://github.com/BlueBrain/MorphIO/actions/runs/12069198211
I would be interested to know if it modifies any other morphometrics.
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Reproduction:
Should all neurites' root node have at least 2 points?
The text was updated successfully, but these errors were encountered: