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environment.yml
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environment.yml
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name: nf_DSL2
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=1_gnu
- alsa-lib=1.2.3=h516909a_0
- arrow=1.1.1=py38h06a4308_0
- attrs=21.2.0=pyhd3eb1b0_0
- bedtools=2.30.0=h7d7f7ad_1
- binaryornot=0.4.4=pyhd3eb1b0_1
- bowtie2=2.4.4=py38h72fc82f_0
- brotlipy=0.7.0=py38h27cfd23_1003
- bz2file=0.98=py38h06a4308_1
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.17.1=h27cfd23_0
- ca-certificates=2021.7.5=h06a4308_1
- cairo=1.16.0=hf32fb01_1
- cattrs=1.7.1=pyhd3eb1b0_0
- certifi=2021.5.30=py38h06a4308_0
- cffi=1.14.6=py38h400218f_0
- chardet=4.0.0=py38h06a4308_1003
- charset-normalizer=2.0.0=pyhd8ed1ab_0
- click=8.0.1=pyhd3eb1b0_0
- conda=4.10.3=py38h06a4308_0
- conda-package-handling=1.7.3=py38h27cfd23_1
- cookiecutter=1.7.3=pyh6c4a22f_0
- coreutils=8.32=h7b6447c_0
- cryptography=3.4.7=py38hd23ed53_0
- curl=7.78.0=h1ccaba5_0
- expat=2.4.1=h2531618_2
- fastqc=0.11.9=hdfd78af_1
- fastqsplitter=1.2.0=py38h4a8c8d9_2
- font-ttf-dejavu-sans-mono=2.37=h6964260_0
- fontconfig=2.13.1=hba837de_1005
- freetype=2.10.4=h5ab3b9f_0
- gettext=0.21.0=hf68c758_0
- giflib=5.2.1=h7b6447c_0
- git=2.32.0=pl5321hc30692c_0
- gitdb=4.0.7=pyhd3eb1b0_0
- gitpython=3.1.18=pyhd3eb1b0_1
- glib=2.68.3=h9c3ff4c_0
- glib-tools=2.68.3=h9c3ff4c_0
- graphite2=1.3.14=h23475e2_0
- harfbuzz=2.8.2=h83ec7ef_0
- htslib=1.13=h9093b5e_0
- icu=68.1=h2531618_0
- idna=3.2=pyhd3eb1b0_0
- importlib-metadata=4.6.4=py38h578d9bd_0
- importlib_metadata=4.6.4=hd8ed1ab_0
- isa-l=2.30.0=ha770c72_4
- itsdangerous=2.0.1=pyhd3eb1b0_0
- jinja2=2.11.3=pyhd3eb1b0_0
- jinja2-time=0.2.0=py_2
- jpeg=9d=h36c2ea0_0
- jsonschema=3.2.0=py38_1
- krb5=1.19.2=hac12032_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libarchive=3.5.1=h3f442fb_1
- libcurl=7.78.0=h0b77cf5_0
- libdeflate=1.7=h27cfd23_5
- libedit=3.1.20210216=h27cfd23_1
- libev=4.33=h7b6447c_0
- libffi=3.3=he6710b0_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.3.0=h5101ec6_17
- libglib=2.68.3=h3e27bee_0
- libgomp=9.3.0=h5101ec6_17
- libiconv=1.16=h516909a_0
- libnghttp2=1.43.0=h812cca2_0
- libpng=1.6.37=hbc83047_0
- libsolv=0.7.19=h780b84a_5
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libtiff=4.2.0=h85742a9_0
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.0=h27cfd23_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h72842e0_0
- lz4-c=1.9.3=h295c915_1
- lzo=2.10=h7b6447c_2
- mamba=0.15.2=py38h2aa5da1_0
- markupsafe=1.1.1=py38h7b6447c_0
- mysql-connector-c=6.1.11=h597af5e_1
- ncurses=6.2=he6710b0_1
- nextflow=21.04.0=h4a94de4_0
- openjdk=11.0.9.1=h5cc2fde_1
- openssl=1.1.1k=h27cfd23_0
- pcre=8.45=h295c915_0
- pcre2=10.37=h032f7d1_0
- perl=5.32.1=0_h7f98852_perl5
- pigz=2.6=h27cfd23_0
- pip=21.2.2=py38h06a4308_0
- pixman=0.40.0=h7b6447c_0
- poyo=0.5.0=pyhd3eb1b0_0
- pthread-stubs=0.4=h36c2ea0_1001
- pycosat=0.6.3=py38h7b6447c_1
- pycparser=2.20=py_2
- pyopenssl=20.0.1=pyhd3eb1b0_1
- pyrsistent=0.17.3=py38h7b6447c_0
- pysocks=1.7.1=py38h06a4308_0
- python=3.8.6=hffdb5ce_5_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-isal=0.11.0=py38h497a2fe_0
- python-slugify=5.0.2=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pyyaml=5.4.1=py38h27cfd23_1
- readline=8.1=h27cfd23_0
- reproc=14.2.1=h36c2ea0_0
- reproc-cpp=14.2.1=h58526e2_0
- requests=2.26.0=pyhd8ed1ab_0
- requests-cache=0.7.4=pyhd8ed1ab_0
- ruamel_yaml=0.15.100=py38h27cfd23_0
- samtools=1.13=h8c37831_0
- setuptools=52.0.0=py38h06a4308_0
- six=1.16.0=pyhd3eb1b0_0
- smmap=4.0.0=pyhd3eb1b0_0
- sqlite=3.36.0=hc218d9a_0
- tabulate=0.8.9=py38h06a4308_0
- tbb=2020.3=hfd86e86_0
- text-unidecode=1.3=py_0
- tk=8.6.10=hbc83047_0
- tqdm=4.62.0=pyhd3eb1b0_1
- typing-extensions=3.10.0.0=hd3eb1b0_0
- typing_extensions=3.10.0.0=pyh06a4308_0
- ucsc-bedgraphtobigwig=377=h0b8a92a_2
- unidecode=1.2.0=pyhd3eb1b0_0
- url-normalize=1.4.3=pyhd8ed1ab_0
- urllib3=1.26.6=pyhd3eb1b0_1
- wheel=0.37.0=pyhd3eb1b0_0
- whichcraft=0.6.1=pyhd3eb1b0_0
- xopen=1.1.0=py38h578d9bd_3
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h27cfd23_1007
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h7b6447c_0
- zipp=3.5.0=pyhd3eb1b0_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.9=haebb681_0
- pip:
- colorama==0.4.4
- coloredlogs==14.0
- colormath==3.0.0
- commonmark==0.9.1
- cycler==0.10.0
- decorator==4.4.2
- future==0.18.2
- humanfriendly==9.0
- iniconfig==1.1.1
- kiwisolver==1.3.1
- lzstring==1.0.4
- markdown==3.3.3
- matplotlib==3.3.3
- multiqc==1.9
- networkx==2.5
- numpy==1.19.4
- packaging==20.9
- pillow==8.0.1
- pluggy==0.13.1
- prompt-toolkit==3.0.18
- py==1.10.0
- pygments==2.7.3
- pyparsing==2.4.7
- pytest==6.2.4
- pytest-workflow==1.5.0
- questionary==1.9.0
- regex==2020.11.13
- rich==10.3.0
- simplejson==3.17.2
- spectra==0.0.11
- toml==0.10.2
- wcwidth==0.2.5
prefix: /home/mazdax/miniconda3/envs/nf_DSL2