Reproducible genomics workflows using Nextflow and nf-core Note that this is a tentative schedule and such, can be subjected to changes.
All times are indicated in CET (Central European Time, UTC+1). This time-zone converter tool may be useful should you are in a different time zone.
9.30 - 9.45
Welcome
9.45 - 10.30
Evan Floden: Introduction to Nextflow
10.30 - 11.20
Nextflow training
11.20 - 11.30
Break
11.30 - 12:30
Nextflow training
12.30 - 14.00
Lunch
14.00 - 14:30
Hackathon introduction
14.30 - 17.30
Hackathon
9.30 - 11.20
Nextflow training
11.20 - 11:30
Break
11.30 - 12.15
Phil Ewels: Introduction to nf-core
12.15 - 13.00
4 flash talks by selected participants
13.00 - 14.30
Lunch
14.30 - 17.30
Hackathon
9.30 - 11.20
Nextflow training
11.20 - 11:30
Break
11.30 - 12.30
Harshil Patel: Featured nf-core pipelines
12.30 - 13.00
3 flash talks by selected participants
13.00 - 14.30
Lunch
14.30 - 15.30
Phil Ewels: Running nf-core pipelines + Contributing to nf-core
15.30 - 17.30
Hackathon
9.30 - 11.20
Nextflow training
11.20 - 11:30
Break
11.30 - 12.30
Paolo di Tommaso: Introduction to DSL2
12.30 - 13.00
3 flash talks by selected participants
13.00 - 14.30
Lunch
14.30 - 15.00
Luca Cozzuto: Master of Pores: "A nanopore processing pipeline"
15.00 - 17.00
Hackathon
17.00 - 17.30
Presentation of the hackathon projects and closing
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