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More fastq but failed to assembly #29

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YaoZhou89 opened this issue Dec 26, 2019 · 2 comments
Open

More fastq but failed to assembly #29

YaoZhou89 opened this issue Dec 26, 2019 · 2 comments

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@YaoZhou89
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Hi, I used SRAssembler for assembly recently, but it was strange that it failed when I increased size of fastq data, however I could run it successfully using small testing data. Should I set some latent parameters?

@YaoZhou89
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One more things: when I used more data, there's a comment like this:
vmatch: searchlength=8 must be >= 9=prefixlen

Does the parameter searchlength relate with data size?

@vpbrendel
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Yes. Please check the Vmatch manual on the web for details.

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