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Describe the bug brkraw bids_convert produces a Segmentation fault (core dumped) error and only creates the top-level files and not the subject folders or their contents
To Reproduce
Steps to reproduce the behavior:
From a terminal, cd into study folder
Run brkraw bids_helper <input dir> <output filename> -j
See that only top-level files exist in the output directory
Expected behavior
The whole BIDS structure including the subject folders and their contents (.nii and .json) files should be produced. This same issue happens when using brkraw tonii_all <input dir> -b
Desktop (please complete the following information):
Ubuntu 24.04.1
brkraw v0.3.11
Bruker PV3.5, MRI
Python 3.9.0
Thank you!
The text was updated successfully, but these errors were encountered:
Describe the bug
brkraw bids_convert
produces a Segmentation fault (core dumped) error and only creates the top-level files and not the subject folders or their contentsTo Reproduce
Steps to reproduce the behavior:
cd
into study folderbrkraw bids_helper <input dir> <output filename> -j
brkraw bids_convert <input dir> <BIDS datasheet.xlsx> -j <JSON syntax template.json> -o <output dir>
Expected behavior
The whole BIDS structure including the subject folders and their contents (.nii and .json) files should be produced. This same issue happens when using
brkraw tonii_all <input dir> -b
Desktop (please complete the following information):
Thank you!
The text was updated successfully, but these errors were encountered: