From f05f5c623dbf82c0434d805be3b70c74c3548210 Mon Sep 17 00:00:00 2001 From: Spiros Maggioros Date: Sat, 14 Sep 2024 04:27:18 +0300 Subject: [PATCH] Some README fixes --- README.md | 12 +++++------- 1 file changed, 5 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 37a7b1c..34f7ef6 100644 --- a/README.md +++ b/README.md @@ -2,23 +2,23 @@ ## Overview -DLICV uses a trained [nnUNet](https://github.com/MIC-DKFZ/nnUNet/tree/nnunetv1) model to compute the intracranial volume from structural MRI scans in the nifti image format, oriented in _**LPS**_ orientation. +DLICV uses a trained [nnUNet](https://github.com/MIC-DKFZ/nnUNet) model to compute the intracranial volume from structural MRI scans in the nifti image format, oriented in _**LPS**_ orientation. ## Installation To install DLICV, just do ```bash - pip install DLICV +pip install DLICV ``` Or to manually download DLICV ```bash - pip install -e . +pip install -e . ``` -We have all the requirements ready at 'requirements.txt', just do +You can install the required packages with ```bash - pip3 install -r requirements.txt +pip install -r requirements.txt ``` ## How to run @@ -37,5 +37,3 @@ DLICV -i test_input/DLICV_test_images -o test_input/DLICV_test_results -m nnunet - set input_folder_path - set output_folder_path - sbatch sample_submit_inference.sh - -Notice: A small dataset is provided for you in test/DLICV_test_images/ folder to try