From 01fcdfbe2498bc51656de08c790081e10288bdb8 Mon Sep 17 00:00:00 2001 From: Derek A Dombek <50093944+derekadombek@users.noreply.github.com> Date: Wed, 22 May 2024 10:01:13 -0600 Subject: [PATCH] [IDWA-OCR-97] Benchmark tests and action (#100) * try benchmarks in gha * try benchmarks in gha * add ./ * add > * add rel path to with option * gh-pages branch and secret * gh-pages branch and secret * change path * change path * change path * add auto-push * make change for another test commit for graph * point to local init fun and not global * end of line * lint * on push main * update readme * change names to workflows * point only to unit tests in workflow --------- Co-authored-by: Derek Dombek --- .github/workflows/ocr-benchmarks.yml | 34 ++ .github/workflows/ocr-tests.yml | 4 +- OCR/README.md | 9 +- OCR/poetry.lock | 850 ++++++++++++++------------- OCR/pyproject.toml | 1 + OCR/tests/bench_test.py | 57 ++ 6 files changed, 546 insertions(+), 409 deletions(-) create mode 100644 .github/workflows/ocr-benchmarks.yml create mode 100644 OCR/tests/bench_test.py diff --git a/.github/workflows/ocr-benchmarks.yml b/.github/workflows/ocr-benchmarks.yml new file mode 100644 index 00000000..6208d9ba --- /dev/null +++ b/.github/workflows/ocr-benchmarks.yml @@ -0,0 +1,34 @@ +name: OCR Poetry Benchmark Tests +on: + push: + branches: + - main + paths: + - .github/workflows/ocr-benchmarks.yml + - OCR/** +jobs: + build: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 + with: + python-version: "3.10" + - name: Install dependencies + run: | + cd OCR/tests + python -m pip install --upgrade pip + pip install poetry + pip install pytest pytest-benchmark + poetry install --with dev + - name: Run tests + run: | + cd OCR/tests + poetry run pytest bench_test.py -v --benchmark-json output.json + - name: Store benchmark result + uses: benchmark-action/github-action-benchmark@v1 + with: + tool: 'pytest' + output-file-path: OCR/tests/output.json + github-token: ${{ secrets.GITHUB_TOKEN }} + auto-push: true diff --git a/.github/workflows/ocr-tests.yml b/.github/workflows/ocr-tests.yml index 24629844..3eedb8be 100644 --- a/.github/workflows/ocr-tests.yml +++ b/.github/workflows/ocr-tests.yml @@ -1,4 +1,4 @@ -name: OCR Poetry Tests +name: OCR Poetry Unit Tests on: pull_request: paths: @@ -21,4 +21,4 @@ jobs: pip install poetry poetry install --with dev - name: Run tests - run: poetry run pytest + run: poetry run pytest tests/ocr_test.py tests/segmentation_template_test.py diff --git a/OCR/README.md b/OCR/README.md index fe2c81b3..5f5a5a49 100644 --- a/OCR/README.md +++ b/OCR/README.md @@ -12,11 +12,18 @@ poetry shell poetry install ``` -Run tests +Run unit tests ```shell poetry run pytest ``` +Run benchmark tests +```shell +poetry run pytest bench_test.py -v +``` + +poetry run pytest bench_test.py -v + Run main, hoping to convert this to a cli at some point ```shell poetry run main diff --git a/OCR/poetry.lock b/OCR/poetry.lock index 8fd85f1e..a477bba2 100644 --- a/OCR/poetry.lock +++ b/OCR/poetry.lock @@ -2,13 +2,13 @@ [[package]] name = "accelerate" -version = "0.28.0" +version = "0.29.3" description = "Accelerate" optional = false python-versions = ">=3.8.0" files = [ - {file = "accelerate-0.28.0-py3-none-any.whl", hash = "sha256:8ae25f8a8dc4cf12283842c469113836300545fb0dfa46fef331fb0a2ac8b421"}, - {file = "accelerate-0.28.0.tar.gz", hash = "sha256:32019a49f4b3a85cc179ac4e38e9e2971f1a997dee026be0512816499464c4d5"}, + {file = "accelerate-0.29.3-py3-none-any.whl", hash = "sha256:99d633d4b6126817c5e554487406748be95c8d1d1e659dd2fd60657e35f532dd"}, + {file = "accelerate-0.29.3.tar.gz", hash = "sha256:1a5a845b06b24b41736b219b2b20fd021ca5dff4070a252445fd6de736e347ac"}, ] [package.dependencies] @@ -21,14 +21,14 @@ safetensors = ">=0.3.1" torch = ">=1.10.0" [package.extras] -dev = ["bitsandbytes", "black (>=23.1,<24.0)", "datasets", "deepspeed (<0.13.0)", "evaluate", "hf-doc-builder (>=0.3.0)", "parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist", "rich", "ruff (>=0.2.1,<0.3.0)", "scikit-learn", "scipy", "timm", "torchpippy (>=0.2.0)", "tqdm", "transformers"] +dev = ["bitsandbytes", "black (>=23.1,<24.0)", "datasets", "deepspeed", "evaluate", "hf-doc-builder (>=0.3.0)", "parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist", "rich", "ruff (>=0.2.1,<0.3.0)", "scikit-learn", "scipy", "timm", "torchpippy (>=0.2.0)", "tqdm", "transformers"] quality = ["black (>=23.1,<24.0)", "hf-doc-builder (>=0.3.0)", "ruff (>=0.2.1,<0.3.0)"] rich = ["rich"] sagemaker = ["sagemaker"] -test-dev = ["bitsandbytes", "datasets", "deepspeed (<0.13.0)", "evaluate", "scikit-learn", "scipy", "timm", "torchpippy (>=0.2.0)", "tqdm", "transformers"] +test-dev = ["bitsandbytes", "datasets", "deepspeed", "evaluate", "scikit-learn", "scipy", "timm", "torchpippy (>=0.2.0)", "tqdm", "transformers"] test-prod = ["parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist"] test-trackers = ["comet-ml", "dvclive", "tensorboard", "wandb"] -testing = ["bitsandbytes", "datasets", "deepspeed (<0.13.0)", "evaluate", "parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist", "scikit-learn", "scipy", "timm", "torchpippy (>=0.2.0)", "tqdm", "transformers"] +testing = ["bitsandbytes", "datasets", "deepspeed", "evaluate", "parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist", "scikit-learn", "scipy", "timm", "torchpippy (>=0.2.0)", "tqdm", "transformers"] [[package]] name = "certifi" @@ -153,13 +153,13 @@ files = [ [[package]] name = "exceptiongroup" -version = "1.2.0" +version = "1.2.1" description = "Backport of PEP 654 (exception groups)" optional = false python-versions = ">=3.7" files = [ - 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[tool.poetry.group.dev.dependencies] ruff = "^0.3.7" pytest = "^8.1.1" +pytest-benchmark = "^4.0.0" [build-system] requires = ["poetry-core"] diff --git a/OCR/tests/bench_test.py b/OCR/tests/bench_test.py new file mode 100644 index 00000000..727eb9cc --- /dev/null +++ b/OCR/tests/bench_test.py @@ -0,0 +1,57 @@ +import pytest +import os +import numpy as np +import cv2 as cv +from ocr.services.image_segmenter import ImageSegmenter +from ocr.services.image_ocr import ImageOCR + + +path = os.path.dirname(__file__) + +segmentation_template = os.path.join(path, "./assets/form_segmention_template.png") +raw_image = os.path.join(path, "./assets/form_filled.png") +raw_image_handwritten = os.path.join(path, "./assets/form_hand_filled.png") +labels_path = os.path.join(path, "./assets/labels.json") + + +class TestOCRBenchmark: + @pytest.fixture(autouse=True) + def setup(self): + self.raw_image = raw_image + self.segmentation_template = segmentation_template + self.labels_path = labels_path + self.segmenter = ImageSegmenter(self.raw_image, self.segmentation_template, self.labels_path) + self.ocr_printed = ImageOCR() + self.ocr_handwritten = ImageOCR(model="microsoft/trocr-base-handwritten") + + def test_ocr_printed_benchmark(self, benchmark): + benchmark(self.ocr_printed.image_to_text, self.segmenter.segment()) + + def test_ocr_handwritten_benchmark(self, benchmark): + benchmark(self.ocr_handwritten.image_to_text, self.segmenter.segment()) + + +class TestImageSegmenterBenchmark: + @pytest.fixture(autouse=True) + def setup(self): + self.raw_image = raw_image + self.segmentation_template = segmentation_template + self.labels_path = labels_path + self.segmenter = ImageSegmenter(self.raw_image, self.segmentation_template, self.labels_path) + + def test_segment_benchmark(self, benchmark): + benchmark(self.segmenter.segment) + + def test_segment_shapes_benchmark(self, benchmark): + segments = self.segmenter.segment() + benchmark(segments.items) + + def test_no_matching_pixels_benchmark(self, benchmark): + segmentation_template = np.zeros((10, 10, 3), dtype=np.uint8) + raw_image = np.ones((10, 10, 3), dtype=np.uint8) + cv.imwrite("no_matching_colors_raw.png", raw_image) + cv.imwrite("no_matching_colors_seg.png", segmentation_template) + segmenter = ImageSegmenter("no_matching_colors_raw.png", "no_matching_colors_seg.png", self.labels_path) + benchmark(segmenter.segment) + os.remove("no_matching_colors_raw.png") + os.remove("no_matching_colors_seg.png")