diff --git a/.gitignore b/.gitignore
index d49a3a14..b651257e 100644
--- a/.gitignore
+++ b/.gitignore
@@ -40,3 +40,341 @@ _exrc
.vimrc
_vimrc
.nvimrc
+
+
+# Created by https://www.toptal.com/developers/gitignore/api/pycharm
+# Edit at https://www.toptal.com/developers/gitignore?templates=pycharm
+
+### PyCharm ###
+# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
+# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
+
+# User-specific stuff
+.idea/**/workspace.xml
+.idea/**/tasks.xml
+.idea/**/usage.statistics.xml
+.idea/**/dictionaries
+.idea/**/shelf
+
+# AWS User-specific
+.idea/**/aws.xml
+
+# Generated files
+.idea/**/contentModel.xml
+
+# Sensitive or high-churn files
+.idea/**/dataSources/
+.idea/**/dataSources.ids
+.idea/**/dataSources.local.xml
+.idea/**/sqlDataSources.xml
+.idea/**/dynamic.xml
+.idea/**/uiDesigner.xml
+.idea/**/dbnavigator.xml
+
+# Gradle
+.idea/**/gradle.xml
+.idea/**/libraries
+
+# Gradle and Maven with auto-import
+# When using Gradle or Maven with auto-import, you should exclude module files,
+# since they will be recreated, and may cause churn. Uncomment if using
+# auto-import.
+# .idea/artifacts
+# .idea/compiler.xml
+# .idea/jarRepositories.xml
+# .idea/modules.xml
+# .idea/*.iml
+# .idea/modules
+# *.iml
+# *.ipr
+
+# CMake
+cmake-build-*/
+
+# Mongo Explorer plugin
+.idea/**/mongoSettings.xml
+
+# File-based project format
+*.iws
+
+# IntelliJ
+out/
+
+# mpeltonen/sbt-idea plugin
+.idea_modules/
+
+# JIRA plugin
+atlassian-ide-plugin.xml
+
+# Cursive Clojure plugin
+.idea/replstate.xml
+
+# SonarLint plugin
+.idea/sonarlint/
+
+# Crashlytics plugin (for Android Studio and IntelliJ)
+com_crashlytics_export_strings.xml
+crashlytics.properties
+crashlytics-build.properties
+fabric.properties
+
+# Editor-based Rest Client
+.idea/httpRequests
+
+# Android studio 3.1+ serialized cache file
+.idea/caches/build_file_checksums.ser
+
+### PyCharm Patch ###
+# Comment Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-215987721
+
+# *.iml
+# modules.xml
+# .idea/misc.xml
+# *.ipr
+
+# Sonarlint plugin
+# https://plugins.jetbrains.com/plugin/7973-sonarlint
+.idea/**/sonarlint/
+
+# SonarQube Plugin
+# https://plugins.jetbrains.com/plugin/7238-sonarqube-community-plugin
+.idea/**/sonarIssues.xml
+
+# Markdown Navigator plugin
+# https://plugins.jetbrains.com/plugin/7896-markdown-navigator-enhanced
+.idea/**/markdown-navigator.xml
+.idea/**/markdown-navigator-enh.xml
+.idea/**/markdown-navigator/
+
+# Cache file creation bug
+# See https://youtrack.jetbrains.com/issue/JBR-2257
+.idea/$CACHE_FILE$
+
+# CodeStream plugin
+# https://plugins.jetbrains.com/plugin/12206-codestream
+.idea/codestream.xml
+
+# Azure Toolkit for IntelliJ plugin
+# https://plugins.jetbrains.com/plugin/8053-azure-toolkit-for-intellij
+.idea/**/azureSettings.xml
+
+# End of https://www.toptal.com/developers/gitignore/api/pycharm
+
+
+
+# Created by https://www.toptal.com/developers/gitignore/api/macos
+# Edit at https://www.toptal.com/developers/gitignore?templates=macos
+
+### macOS ###
+# General
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# Icon must end with two \r
+Icon
+
+
+# Thumbnails
+._*
+
+# Files that might appear in the root of a volume
+.DocumentRevisions-V100
+.fseventsd
+.Spotlight-V100
+.TemporaryItems
+.Trashes
+.VolumeIcon.icns
+.com.apple.timemachine.donotpresent
+
+# Directories potentially created on remote AFP share
+.AppleDB
+.AppleDesktop
+Network Trash Folder
+Temporary Items
+.apdisk
+
+### macOS Patch ###
+# iCloud generated files
+*.icloud
+
+# End of https://www.toptal.com/developers/gitignore/api/macos
+
+
+
+# Created by https://www.toptal.com/developers/gitignore/api/python
+# Edit at https://www.toptal.com/developers/gitignore?templates=python
+
+### Python ###
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+# Usually these files are written by a python script from a template
+# before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+# For a library or package, you might want to ignore these files since the code is
+# intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+# However, in case of collaboration, if having platform-specific dependencies or dependencies
+# having no cross-platform support, pipenv may install dependencies that don't work, or not
+# install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+# This is especially recommended for binary packages to ensure reproducibility, and is more
+# commonly ignored for libraries.
+# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+# in version control.
+# https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+# and can be added to the global gitignore or merged into this file. For a more nuclear
+# option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+### Python Patch ###
+# Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration
+poetry.toml
+
+# ruff
+.ruff_cache/
+
+# LSP config files
+pyrightconfig.json
+
+# End of https://www.toptal.com/developers/gitignore/api/python
diff --git a/OCR/.idea/.gitignore b/OCR/.idea/.gitignore
new file mode 100644
index 00000000..26d33521
--- /dev/null
+++ b/OCR/.idea/.gitignore
@@ -0,0 +1,3 @@
+# Default ignored files
+/shelf/
+/workspace.xml
diff --git a/OCR/.idea/OCR.iml b/OCR/.idea/OCR.iml
new file mode 100644
index 00000000..0bf1f866
--- /dev/null
+++ b/OCR/.idea/OCR.iml
@@ -0,0 +1,12 @@
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/OCR/.idea/inspectionProfiles/profiles_settings.xml b/OCR/.idea/inspectionProfiles/profiles_settings.xml
new file mode 100644
index 00000000..105ce2da
--- /dev/null
+++ b/OCR/.idea/inspectionProfiles/profiles_settings.xml
@@ -0,0 +1,6 @@
+
+
+
+
+
+
\ No newline at end of file
diff --git a/OCR/.idea/misc.xml b/OCR/.idea/misc.xml
new file mode 100644
index 00000000..f364513e
--- /dev/null
+++ b/OCR/.idea/misc.xml
@@ -0,0 +1,9 @@
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/OCR/.idea/modules.xml b/OCR/.idea/modules.xml
new file mode 100644
index 00000000..cd020530
--- /dev/null
+++ b/OCR/.idea/modules.xml
@@ -0,0 +1,8 @@
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/OCR/.idea/runConfigurations/Pytest.xml b/OCR/.idea/runConfigurations/Pytest.xml
new file mode 100644
index 00000000..57dd5937
--- /dev/null
+++ b/OCR/.idea/runConfigurations/Pytest.xml
@@ -0,0 +1,17 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/OCR/.idea/runConfigurations/_template__of_py_test.xml b/OCR/.idea/runConfigurations/_template__of_py_test.xml
new file mode 100644
index 00000000..d1468676
--- /dev/null
+++ b/OCR/.idea/runConfigurations/_template__of_py_test.xml
@@ -0,0 +1,20 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/OCR/.idea/vcs.xml b/OCR/.idea/vcs.xml
new file mode 100644
index 00000000..6c0b8635
--- /dev/null
+++ b/OCR/.idea/vcs.xml
@@ -0,0 +1,6 @@
+
+
+
+
+
+
\ No newline at end of file
diff --git a/OCR/poetry.lock b/OCR/poetry.lock
new file mode 100644
index 00000000..c438941d
--- /dev/null
+++ b/OCR/poetry.lock
@@ -0,0 +1,292 @@
+# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
+
+[[package]]
+name = "black"
+version = "24.3.0"
+description = "The uncompromising code formatter."
+optional = false
+python-versions = ">=3.8"
+files = [
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+tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
+typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""}
+
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+colorama = ["colorama (>=0.4.3)"]
+d = ["aiohttp (>=3.7.4)", "aiohttp (>=3.7.4,!=3.9.0)"]
+jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
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+python-versions = ">=3.7"
+files = [
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+[[package]]
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+optional = false
+python-versions = ">=3.5"
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+[[package]]
+name = "numpy"
+version = "1.26.4"
+description = "Fundamental package for array computing in Python"
+optional = false
+python-versions = ">=3.9"
+files = [
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diff --git a/OCR/pyproject.toml b/OCR/pyproject.toml
new file mode 100644
index 00000000..315b61cf
--- /dev/null
+++ b/OCR/pyproject.toml
@@ -0,0 +1,20 @@
+[tool.poetry]
+package-mode = false
+name = "ocr"
+version = "0.1.0"
+description = "Digitize scanned PDFs"
+readme = "README.md"
+
+[tool.poetry.dependencies]
+python = "^3.10"
+numpy = "^1.26.4"
+opencv-python = "^4.9.0.80"
+python-dotenv = "^1.0.1"
+
+[tool.poetry.group.dev.dependencies]
+black = "^24.3.0"
+pytest = "^8.1.1"
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"
diff --git a/OCR/readme.md b/OCR/readme.md
new file mode 100644
index 00000000..8d681008
--- /dev/null
+++ b/OCR/readme.md
@@ -0,0 +1,33 @@
+## OCR
+
+### Installation
+
+```shell
+pipx install poetry
+```
+
+Activate the virtual environment and install dependencies, all subsequent commands assume you are in the virtual env
+```shell
+poetry shell
+poetry install
+```
+
+Run tests
+```shell
+poetry run pytest
+```
+
+Adding new dependencies
+```shell
+poetry add package-name
+```
+
+To manually update the poetry lock file
+```shell
+poetry lock
+```
+
+To view installed packages in the virtual env
+```shell
+poetry show
+```
\ No newline at end of file
diff --git a/OCR/tests/assets/form_filled.png b/OCR/tests/assets/form_filled.png
new file mode 100644
index 00000000..3051086f
Binary files /dev/null and b/OCR/tests/assets/form_filled.png differ
diff --git a/OCR/tests/assets/form_segmention_template.png b/OCR/tests/assets/form_segmention_template.png
new file mode 100644
index 00000000..074616ba
Binary files /dev/null and b/OCR/tests/assets/form_segmention_template.png differ
diff --git a/OCR/tests/assets/labels.json b/OCR/tests/assets/labels.json
new file mode 100644
index 00000000..c10302f2
--- /dev/null
+++ b/OCR/tests/assets/labels.json
@@ -0,0 +1,4 @@
+{
+ "255,0,0": "nbs_patient_id",
+ "0,0,255": "nbs_cas_id"
+}
\ No newline at end of file
diff --git a/OCR/tests/segmentation_template_test.py b/OCR/tests/segmentation_template_test.py
index cee9f637..852f9601 100644
--- a/OCR/tests/segmentation_template_test.py
+++ b/OCR/tests/segmentation_template_test.py
@@ -8,9 +8,9 @@
load_dotenv()
-segmentation_template = os.getenv('SEGMENTATION_TEMPLATE_PATH')
-raw_image = os.getenv('RAW_IMAGE_PATH')
-labels_path = os.getenv('LABELS_PATH')
+segmentation_template = "./tests/assets/form_segmention_template.png"
+raw_image = "./tests/assets/form_filled.png"
+labels_path = "./tests/assets/labels.json"
class TestImageSegmenter:
@pytest.fixture(autouse=True)