diff --git a/bin/summarize_qc.py b/bin/summarize_qc.py index c344d8f..d95c0f6 100755 --- a/bin/summarize_qc.py +++ b/bin/summarize_qc.py @@ -429,7 +429,7 @@ def main(): fixed_summary = fixed_summary.merge(contigs[['Sample', 'n_contigs_unicycler']],left_on='sample', right_on='Sample').drop('Sample', axis = 1) else: # If Unicycler run failed, config_files don't get created - logger.info(f"{contig_file} not found") + logger.info(f"{contig_files} not found") fixed_summary['n_contigs_unicycler'] = 'NaN' if args.workflow == 'ref_based' or args.workflow == 'full':