From 166fa4b0648adad007cc52fcbc7d5af2655cb4d1 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Sat, 1 Mar 2025 01:48:50 +0000 Subject: [PATCH] Deployed d5a893a with MkDocs version: 1.6.1 --- .nojekyll | 0 404.html | 345 + api/index.html | 795 ++ assets/_mkdocstrings.css | 143 + assets/images/favicon.png | Bin 0 -> 1870 bytes assets/javascripts/bundle.f1b6f286.min.js | 16 + assets/javascripts/bundle.f1b6f286.min.js.map | 7 + assets/javascripts/lunr/min/lunr.ar.min.js | 1 + assets/javascripts/lunr/min/lunr.da.min.js | 18 + assets/javascripts/lunr/min/lunr.de.min.js | 18 + assets/javascripts/lunr/min/lunr.du.min.js | 18 + assets/javascripts/lunr/min/lunr.el.min.js | 1 + assets/javascripts/lunr/min/lunr.es.min.js | 18 + assets/javascripts/lunr/min/lunr.fi.min.js | 18 + assets/javascripts/lunr/min/lunr.fr.min.js | 18 + assets/javascripts/lunr/min/lunr.he.min.js | 1 + assets/javascripts/lunr/min/lunr.hi.min.js | 1 + assets/javascripts/lunr/min/lunr.hu.min.js | 18 + assets/javascripts/lunr/min/lunr.hy.min.js | 1 + assets/javascripts/lunr/min/lunr.it.min.js | 18 + assets/javascripts/lunr/min/lunr.ja.min.js | 1 + assets/javascripts/lunr/min/lunr.jp.min.js | 1 + assets/javascripts/lunr/min/lunr.kn.min.js | 1 + assets/javascripts/lunr/min/lunr.ko.min.js | 1 + assets/javascripts/lunr/min/lunr.multi.min.js | 1 + assets/javascripts/lunr/min/lunr.nl.min.js | 18 + assets/javascripts/lunr/min/lunr.no.min.js | 18 + assets/javascripts/lunr/min/lunr.pt.min.js | 18 + assets/javascripts/lunr/min/lunr.ro.min.js | 18 + assets/javascripts/lunr/min/lunr.ru.min.js | 18 + assets/javascripts/lunr/min/lunr.sa.min.js | 1 + .../lunr/min/lunr.stemmer.support.min.js | 1 + assets/javascripts/lunr/min/lunr.sv.min.js | 18 + assets/javascripts/lunr/min/lunr.ta.min.js | 1 + assets/javascripts/lunr/min/lunr.te.min.js | 1 + assets/javascripts/lunr/min/lunr.th.min.js | 1 + assets/javascripts/lunr/min/lunr.tr.min.js | 18 + assets/javascripts/lunr/min/lunr.vi.min.js | 1 + assets/javascripts/lunr/min/lunr.zh.min.js | 1 + assets/javascripts/lunr/tinyseg.js | 206 + assets/javascripts/lunr/wordcut.js | 6708 +++++++++++++++++ .../workers/search.f8cc74c7.min.js | 42 + .../workers/search.f8cc74c7.min.js.map | 7 + assets/stylesheets/main.8608ea7d.min.css | 1 + assets/stylesheets/main.8608ea7d.min.css.map | 1 + assets/stylesheets/palette.06af60db.min.css | 1 + .../stylesheets/palette.06af60db.min.css.map | 1 + implementation/index.html | 521 ++ index.html | 392 + javascript/katex.js | 10 + objects.inv | Bin 0 -> 178 bytes search/search_index.json | 1 + sitemap.xml | 3 + sitemap.xml.gz | Bin 0 -> 127 bytes 54 files changed, 9487 insertions(+) create mode 100644 .nojekyll create mode 100644 404.html create mode 100644 api/index.html create mode 100644 assets/_mkdocstrings.css create mode 100644 assets/images/favicon.png create mode 100644 assets/javascripts/bundle.f1b6f286.min.js create mode 100644 assets/javascripts/bundle.f1b6f286.min.js.map create mode 100644 assets/javascripts/lunr/min/lunr.ar.min.js create mode 100644 assets/javascripts/lunr/min/lunr.da.min.js create mode 100644 assets/javascripts/lunr/min/lunr.de.min.js create mode 100644 assets/javascripts/lunr/min/lunr.du.min.js create mode 100644 assets/javascripts/lunr/min/lunr.el.min.js create mode 100644 assets/javascripts/lunr/min/lunr.es.min.js create mode 100644 assets/javascripts/lunr/min/lunr.fi.min.js create mode 100644 assets/javascripts/lunr/min/lunr.fr.min.js create mode 100644 assets/javascripts/lunr/min/lunr.he.min.js create mode 100644 assets/javascripts/lunr/min/lunr.hi.min.js create mode 100644 assets/javascripts/lunr/min/lunr.hu.min.js create mode 100644 assets/javascripts/lunr/min/lunr.hy.min.js create mode 100644 assets/javascripts/lunr/min/lunr.it.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ja.min.js create mode 100644 assets/javascripts/lunr/min/lunr.jp.min.js create mode 100644 assets/javascripts/lunr/min/lunr.kn.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ko.min.js create mode 100644 assets/javascripts/lunr/min/lunr.multi.min.js create mode 100644 assets/javascripts/lunr/min/lunr.nl.min.js create mode 100644 assets/javascripts/lunr/min/lunr.no.min.js create mode 100644 assets/javascripts/lunr/min/lunr.pt.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ro.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ru.min.js create mode 100644 assets/javascripts/lunr/min/lunr.sa.min.js create mode 100644 assets/javascripts/lunr/min/lunr.stemmer.support.min.js create mode 100644 assets/javascripts/lunr/min/lunr.sv.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ta.min.js create mode 100644 assets/javascripts/lunr/min/lunr.te.min.js create mode 100644 assets/javascripts/lunr/min/lunr.th.min.js create mode 100644 assets/javascripts/lunr/min/lunr.tr.min.js create mode 100644 assets/javascripts/lunr/min/lunr.vi.min.js create mode 100644 assets/javascripts/lunr/min/lunr.zh.min.js create mode 100644 assets/javascripts/lunr/tinyseg.js create mode 100644 assets/javascripts/lunr/wordcut.js create mode 100644 assets/javascripts/workers/search.f8cc74c7.min.js create mode 100644 assets/javascripts/workers/search.f8cc74c7.min.js.map create mode 100644 assets/stylesheets/main.8608ea7d.min.css create mode 100644 assets/stylesheets/main.8608ea7d.min.css.map create mode 100644 assets/stylesheets/palette.06af60db.min.css create mode 100644 assets/stylesheets/palette.06af60db.min.css.map create mode 100644 implementation/index.html create mode 100644 index.html create mode 100644 javascript/katex.js create mode 100644 objects.inv create mode 100644 search/search_index.json create mode 100644 sitemap.xml create mode 100644 sitemap.xml.gz diff --git a/.nojekyll b/.nojekyll new file mode 100644 index 0000000..e69de29 diff --git a/404.html b/404.html new file mode 100644 index 0000000..cc09a15 --- /dev/null +++ b/404.html @@ -0,0 +1,345 @@ + + + +
+ + + + + + + + + + + + + + +Probability mass function for final size of a Reed-Frost outbreak.
+See Lefevre & Picard (1990) equation 3.10 for details.
+ + +Parameters:
+Name | +Type | +Description | +Default | +
---|---|---|---|
+ k
+ |
+
+ int, or int array
+ |
+
+
+
+ number of total infections + |
+ + required + | +
+ n
+ |
+
+ int
+ |
+
+
+
+ initial number susceptible + |
+ + required + | +
+ m
+ |
+
+ int
+ |
+
+
+
+ initial number infected + |
+
+ 1
+ |
+
+ p
+ |
+
+ float
+ |
+
+
+
+ probability of "effective contact" (i.e., infection) + |
+ + required + | +
Returns:
+Type | +Description | +
---|---|
+ float | NDArray[float64]
+ |
+
+
+
+ float, or float array: pmf of the total infection distribution + |
+
src/reedfrost/__init__.py
Distribution of outbreak sizes of Reed-Frost outbreaks, conditioned on +the outbreak being large.
+See Barbour & Sergey 2004 (doi:10.1016/j.spa.2004.03.013) corollary 3.4
+ + +Parameters:
+Name | +Type | +Description | +Default | +
---|---|---|---|
+ k
+ |
+
+ int, or int array
+ |
+
+
+
+ number of total infections + |
+ + required + | +
+ n
+ |
+
+ int
+ |
+
+
+
+ initial number of susceptibles + |
+ + required + | +
+ lambda_
+ |
+
+ float
+ |
+
+
+
+ reproduction number + |
+ + required + | +
+ i_n
+ |
+
+ int
+ |
+
+
+
+ initial number of susceptibles. Defaults to 1. + |
+
+ 1
+ |
+
Returns:
+Type | +Description | +
---|---|
+ float | NDArray[float64]
+ |
+
+
+
+ float, or float array: pmf of the total infection distribution + |
+
src/reedfrost/__init__.py