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On main notebook interface I should remove Profile and add Batch button. Internally, I need another batch submission script to send CHAP to batch node. Follow CHESS batch page to see how to structure job submission.
We need the following steps:
create tarball of given workflow, i.e. we'll need to copy all workflow files along with yaml configurations
create another script for batch submission
the batch_submit.sh should call qsub command and copy necessary files to some area to unpack
need to decide how to deal with conda, therefore it may be I need to have proper conda environment in batch nodes or will need to create them dynamically
should fetch job ID and provide link to chap.log that user can find their batch job
The text was updated successfully, but these errors were encountered:
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changed the title
Add batch submission fewture
Add batch submission feature
Sep 8, 2023
On main notebook interface I should remove Profile and add Batch button. Internally, I need another batch submission script to send CHAP to batch node. Follow CHESS batch page to see how to structure job submission.
We need the following steps:
batch_submit.sh
should call qsub command and copy necessary files to some area to unpackconda
, therefore it may be I need to have proper conda environment in batch nodes or will need to create them dynamicallychap.log
that user can find their batch jobThe text was updated successfully, but these errors were encountered: