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Cargo.toml
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Cargo.toml
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[package]
name = "simpleaf"
version = "0.17.4"
edition = "2021"
authors = ["Rob Patro <[email protected]>", "Dongze He <[email protected]>"]
description = "A rust framework to make using alevin-fry even simpler."
license-file = "LICENSE"
readme = "README.md"
repository = "https://github.com/COMBINE-lab/simpleaf"
homepage = "https://github.com/COMBINE-lab/simpleaf"
#documentation = "https://alevin-fry.readthedocs.io/en/latest/"
include = [
"/src/*.rs",
"/src/utils/*.rs",
"/src/simpleaf_commands/*.rs",
"/Cargo.toml",
"/Cargo.lock",
"/README.md",
"/LICENSE",
]
keywords = [
"single-cell",
"preprocessing",
"RNA-seq",
"single-nucleus",
"RNA-velocity",
]
categories = ["command-line-utilities", "science"]
# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
[dependencies]
seq_geom_parser = { git = "https://github.com/COMBINE-lab/seq_geom_parser", branch = "dev", version = "0.3.0" }
seq_geom_xform = { git = "https://github.com/COMBINE-lab/seq_geom_xform", branch = "dev", version = "0.4.0" }
roers = { git = "https://github.com/COMBINE-lab/roers", branch = "main", version = "0.3.0" }
anyhow = "^1.0"
clap = { version = "4.5.21", features = [
"derive",
"cargo",
"deprecated",
"wrap_help",
"help",
"usage",
"error-context",
] }
cmd_lib = "^1.9.5"
tracing = "0.1.41"
tracing-subscriber = { version = "0.3.18", default-features = true, features = [
"env-filter",
] }
semver = "^1.0.23"
serde = { version = "1.0.215", features = ["derive"] }
serde_json = "1.0.133"
time = { version = "^0.3.36", features = [
"macros",
"formatting",
"parsing",
"serde",
"serde-human-readable",
] }
which = "^6.0.3"
jrsonnet-evaluator = "0.5.0-pre95"
jrsonnet-cli = "0.5.0-pre95"
jrsonnet-parser = "0.5.0-pre95"
thiserror = "1.0"
phf = { version = "0.11.2", features = ["macros"] }
chrono = "0.4.38"
tabled = "0.15.0"
csv = "1.3.1"
minreq = { version = "2.12.0", features = [
"serde",
"serde_json",
"https",
"json-using-serde",
] }
strum = { version = "0.26.3", features = ["derive", "phf"] }
strum_macros = "0.26.4"
[profile.release]
lto = "thin"
opt-level = 3
# The profile that 'cargo dist' will build with
[profile.dist]
inherits = "release"
lto = "thin"
# Config for 'cargo dist'
[workspace.metadata.dist]
# The preferred cargo-dist version to use in CI (Cargo.toml SemVer syntax)
cargo-dist-version = "0.21.1"
# CI backends to support
ci = "github"
# The installers to generate for each app
installers = ["shell"]
# Target platforms to build apps for (Rust target-triple syntax)
targets = [
"aarch64-apple-darwin",
"x86_64-apple-darwin",
"x86_64-unknown-linux-gnu",
]
# Which actions to run on pull requests
pr-run-mode = "plan"
# Whether to install an updater program
install-updater = true
# Path that installers should place binaries in
install-path = "CARGO_HOME"
[workspace.metadata.dist.github-custom-runners]
aarch64-apple-darwin = "macos-14"