diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 00000000..3d0ee1c1
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,7 @@
+version: 2
+updates:
+    - package-ecosystem: pip
+      directory: "/" # Location of package manifests
+      schedule:
+        interval: "daily"
+      target-branch: "develop"
\ No newline at end of file
diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml
index b3a71336..d99b053b 100644
--- a/.github/workflows/build_and_test.yml
+++ b/.github/workflows/build_and_test.yml
@@ -9,12 +9,13 @@ on:
 
 jobs:
 
-  macos:
-    name: Build and test (MacOS)
-    runs-on: macos-latest
+  run-tests:
+    name: Build and test
     strategy:
       matrix:
-        python-version: ['3.9', '3.10', '3.11']
+        python-version: ['3.10', '3.11', '3.12']
+        os: [macos-latest, ubuntu-latest, windows-latest]
+    runs-on: ${{ matrix.os }}
     steps:
     - uses: actions/checkout@v2
     - name: Set up Python ${{ matrix.python-version }}
@@ -24,58 +25,11 @@ jobs:
     - name: Build qermit
       if: github.event_name == 'pull_request'
       run: |
-        pip install -e . -v
+        pip install -e .[tests] -v
     - name: Test qermit 
       if: github.event_name == 'pull_request'
       run: |
         cd tests
-        pip install -r test_requirements.txt
-        pytest --cov-report term-missing:skip-covered --cov=qermit --durations=10
-
-  linux:
-    name: Build and test (Linux)
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ['3.9', '3.10', '3.11']
-    steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Build qermit
-      if: github.event_name == 'pull_request'
-      run: |
-        pip install -e . -v
-    - name: Test qermit 
-      if: github.event_name == 'pull_request'
-      run: |
-        cd tests
-        pip install -r test_requirements.txt
-        pytest --cov-report term-missing:skip-covered --cov=qermit --durations=10
-      
-  windows:
-    name: Build and test (Windows)
-    runs-on: windows-latest
-    strategy:
-      matrix:
-        python-version: ['3.9', '3.10', '3.11']
-    steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Build qermit
-      if: github.event_name == 'pull_request'
-      run: |
-        pip install -e . -v
-    - name: Test qermit 
-      if: github.event_name == 'pull_request'
-      run: |
-        cd tests
-        pip install -r test_requirements.txt
         pytest --cov-report term-missing:skip-covered --cov=qermit --durations=10
 
   build-docs:
@@ -85,11 +39,10 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v3
       - name: Install Qermit
-        run: pip install .
+        run: pip install -e .[docs] -v
       - name: Build Docs
         run: |
           cd docs_src
-          pip install -r requirements.txt
           ./build_docs.sh
           cd ../manual
           ./build_manual.sh
@@ -111,9 +64,8 @@ jobs:
       uses: actions/checkout@v2
     - name: Build qermit
       run: |
-        pip install -e . -v
+        pip install .[tests]
         cd tests
-        pip install -r test_requirements.txt
     - name: Run mypy
       if: github.event_name == 'pull_request'
       run: mypy -p qermit
diff --git a/.github/workflows/deploy_docs.yml b/.github/workflows/deploy_docs.yml
index 02bd0182..57709643 100644
--- a/.github/workflows/deploy_docs.yml
+++ b/.github/workflows/deploy_docs.yml
@@ -24,13 +24,12 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v3
       - name: Install Qermit
-        run: pip install .
+        run: pip install .[docs]
       - name: Setup Pages
         uses: actions/configure-pages@v3
       - name: Build Docs
         run: |
           cd docs_src
-          pip install -r requirements.txt
           ./build_docs.sh
           cd ../manual
           ./build_manual.sh
diff --git a/docs_src/requirements.txt b/docs_src/requirements.txt
deleted file mode 100644
index 601e8d8f..00000000
--- a/docs_src/requirements.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-sphinx > 4.2.0, <6.2.0
-sphinx_autodoc_annotation
-sphinx_book_theme ~= 1.0.1
-jupyter_sphinx
diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 00000000..b31263b5
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,2460 @@
+# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+
+[[package]]
+name = "accessible-pygments"
+version = "0.0.4"
+description = "A collection of accessible pygments styles"
+optional = false
+python-versions = "*"
+files = [
+    {file = "accessible-pygments-0.0.4.tar.gz", hash = "sha256:e7b57a9b15958e9601c7e9eb07a440c813283545a20973f2574a5f453d0e953e"},
+    {file = "accessible_pygments-0.0.4-py2.py3-none-any.whl", hash = "sha256:416c6d8c1ea1c5ad8701903a20fcedf953c6e720d64f33dc47bfb2d3f2fa4e8d"},
+]
+
+[package.dependencies]
+pygments = ">=1.5"
+
+[[package]]
+name = "alabaster"
+version = "0.7.16"
+description = "A light, configurable Sphinx theme"
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"},
+    {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"},
+]
+
+[[package]]
+name = "annotated-types"
+version = "0.6.0"
+description = "Reusable constraint types to use with typing.Annotated"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
+    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
+]
+
+[[package]]
+name = "babel"
+version = "2.14.0"
+description = "Internationalization utilities"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "Babel-2.14.0-py3-none-any.whl", hash = "sha256:efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287"},
+    {file = "Babel-2.14.0.tar.gz", hash = "sha256:6919867db036398ba21eb5c7a0f6b28ab8cbc3ae7a73a44ebe34ae74a4e7d363"},
+]
+
+[package.extras]
+dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
+
+[[package]]
+name = "beautifulsoup4"
+version = "4.12.3"
+description = "Screen-scraping library"
+optional = false
+python-versions = ">=3.6.0"
+files = [
+    {file = "beautifulsoup4-4.12.3-py3-none-any.whl", hash = "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"},
+    {file = "beautifulsoup4-4.12.3.tar.gz", hash = "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051"},
+]
+
+[package.dependencies]
+soupsieve = ">1.2"
+
+[package.extras]
+cchardet = ["cchardet"]
+chardet = ["chardet"]
+charset-normalizer = ["charset-normalizer"]
+html5lib = ["html5lib"]
+lxml = ["lxml"]
+
+[[package]]
+name = "certifi"
+version = "2024.2.2"
+description = "Python package for providing Mozilla's CA Bundle."
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
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+]
+
+[[package]]
+name = "cffi"
+version = "1.16.0"
+description = "Foreign Function Interface for Python calling C code."
+optional = false
+python-versions = ">=3.8"
+files = [
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+
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+description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
+optional = false
+python-versions = ">=3.7.0"
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+    {file = "websockets-12.0.tar.gz", hash = "sha256:81df9cbcbb6c260de1e007e58c011bfebe2dafc8435107b0537f393dd38c8b1b"},
+]
+
+[metadata]
+lock-version = "2.0"
+python-versions = ">=3.10, <3.13"
+content-hash = "8038057aa0a5e6809342816bbc5d8401b132a412dd0edf244ff8ad6dfb1e447b"
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 00000000..078dc7ee
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,32 @@
+[build-system]
+requires = ["poetry", "poetry-core>=1.0.8"]
+build-backend = "poetry.core.masonry.api"
+
+[tool.poetry]
+name = "qermit"
+version = "0.5.0"
+description = "Python package for quantum error mitigation."
+authors = [
+    "Daniel Mills <daniel.mills@quantinuum.com>",
+    "Silas Dilkes <silas.dilkes@quantinuum.com>",
+    "Cristina Circsoiu <cristina.cirstoiu@quantinuum.com>"
+]
+readme = "README.md"
+
+[tool.poetry.dependencies]
+python = ">=3.10, <3.13"
+pytket-qiskit = "^0.50.0"
+matplotlib = "^3.8.3"
+
+pytest = {version="^8.1.1", optional=true}
+mypy = {version="^1.9.0", optional=true}
+flake8 = {version="^7.0.0", optional=true}
+sphinx = {version="^7.2.6", optional=true}
+pytest-cov = {version="^4.1.0", optional=true}
+sphinx-book-theme = {version="^1.1.2", optional=true}
+qiskit-ibm-provider = {version="^0.10.0", optional=true}
+pytket-quantinuum = {version="^0.30.0", optional=true}
+
+[tool.poetry.extras]
+tests = ["pytest", "mypy", "flake8", "pytest-cov", "qiskit-ibm-provider", "pytket-quantinuum"]
+docs = ["sphinx", "sphinx-book-theme"]
diff --git a/qermit/noise_model/mock_quantinuum_backend.py b/qermit/noise_model/mock_quantinuum_backend.py
index 06afa7c1..22cec3ed 100644
--- a/qermit/noise_model/mock_quantinuum_backend.py
+++ b/qermit/noise_model/mock_quantinuum_backend.py
@@ -22,7 +22,7 @@
 from pytket import OpType
 from pytket import Circuit
 from pytket.backends.resulthandle import ResultHandle
-from typing import List, Union
+from typing import List, Union, Optional, Sequence
 from pytket.backends.backendresult import BackendResult
 from .noisy_aer_backend import NoisyAerBackend
 
@@ -56,7 +56,7 @@ def __init__(self):
     def process_circuit(
         self,
         circuit: Circuit,
-        n_shot: int,
+        n_shots: Optional[int] = None,
         valid_check: bool = True,
         **kwargs,
     ) -> ResultHandle:
@@ -64,8 +64,8 @@ def process_circuit(
 
         :param circuit: Circuit to process on the backend
         :type circuit: Circuit
-        :param n_shot: Number of shots to run per circuit.
-        :type n_shot: int
+        :param n_shots: Number of shots to run per circuit.
+        :type n_shots: int
         :param valid_check: Explicitly check that all circuits satisfy all
             required predicates to run on the backend, defaults to True
         :type valid_check: bool, optional
@@ -86,15 +86,15 @@ def process_circuit(
             self.noisy_backend.noisy_gate_set.union({OpType.Reset, OpType.Barrier})
         ).verify(cu.circuit)
 
-        handle = self.noisy_backend.process_circuit(cu.circuit, n_shot)
+        handle = self.noisy_backend.process_circuit(cu.circuit, n_shots)
         self.handle_cu_dict[handle] = cu
 
         return handle
 
     def process_circuits(
         self,
-        circuits: List[Circuit],
-        n_shots: Union[List[int], int],
+        circuits: Sequence[Circuit],
+        n_shots: Union[Optional[int], Sequence[Optional[int]]] = None,
         valid_check: bool = True,
         **kwargs,
     ) -> List[ResultHandle]:
@@ -111,7 +111,7 @@ def process_circuits(
         :return: Handles to results for each input circuit, as an interable in the same order as the circuits.
         :rtype: List[ResultHandle]
         """
-        if isinstance(n_shots, int):
+        if (isinstance(n_shots, int)) or (n_shots is None):
             return [
                 self.process_circuit(circuit, n_shots, valid_check=valid_check)
                 for circuit in circuits
diff --git a/qermit/noise_model/noisy_aer_backend.py b/qermit/noise_model/noisy_aer_backend.py
index b8b78056..88749761 100644
--- a/qermit/noise_model/noisy_aer_backend.py
+++ b/qermit/noise_model/noisy_aer_backend.py
@@ -14,7 +14,7 @@
 
 from pytket.extensions.qiskit import AerBackend  # type: ignore
 from pytket import OpType
-import qiskit.providers.aer.noise as noise  # type: ignore
+import qiskit_aer.noise as noise  # type: ignore
 
 
 class NoisyAerBackend(AerBackend):
diff --git a/requirements.txt b/requirements.txt
deleted file mode 100644
index b867c67d..00000000
--- a/requirements.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-pytket>=1.21
-matplotlib
-networkx
\ No newline at end of file
diff --git a/setup.py b/setup.py
deleted file mode 100644
index 188bc32e..00000000
--- a/setup.py
+++ /dev/null
@@ -1,32 +0,0 @@
-from setuptools import setup, find_packages
-
-version = {}
-with open("_version.py") as fp:
-    exec(fp.read(), version)
-
-setup(
-    name="qermit",
-    version=version["__version__"],
-    python_requires=">=3.9",
-    description="error-mitigation framework, an extension to pytket",
-    long_description=open("README.md").read(),
-    long_description_content_type="text/markdown",
-    license="CQC Non-Commercial Use Software Licence",
-    include_package_data=True,
-    packages=find_packages(),
-    install_requires=["pytket ~= 1.11", "matplotlib", "networkx"],
-    classifiers=[
-        "Environment :: Console",
-        "Programming Language :: Python :: 3.10",
-        "Programming Language :: Python :: 3.9",
-        "Programming Language :: Python :: 3.11",
-        "License :: Other/Proprietary License",
-        "Operating System :: MacOS :: MacOS X",
-        "Operating System :: POSIX :: Linux",
-        "Operating System :: Microsoft :: Windows",
-        "Intended Audience :: Developers",
-        "Intended Audience :: Science/Research",
-        "Topic :: Scientific/Engineering",
-    ],
-    zip_safe=False,
-)
diff --git a/tests/pec_test.py b/tests/pec_test.py
index 1062d0e7..99cbc1b5 100644
--- a/tests/pec_test.py
+++ b/tests/pec_test.py
@@ -38,10 +38,10 @@
 from pytket.predicates import GateSetPredicate, CliffordCircuitPredicate  # type: ignore
 from qermit import AnsatzCircuit, ObservableExperiment
 from pytket.extensions.qiskit import IBMQEmulatorBackend  # type: ignore
-from qiskit import IBMQ  # type: ignore
+from qiskit_ibm_provider import IBMProvider
 import pytest
 
-skip_remote_tests: bool = not IBMQ.stored_account()
+skip_remote_tests: bool = not IBMProvider.saved_accounts()
 REASON = "IBMQ account not configured"
 
 
diff --git a/tests/test_requirements.txt b/tests/test_requirements.txt
deleted file mode 100644
index 1b3dcea9..00000000
--- a/tests/test_requirements.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-pytket-qiskit
-qiskit-ibmq-provider
-pytest
-pytest-cov
-flake8
-mypy==0.982
-pytket-quantinuum>=0.15.0
diff --git a/tests/tomography_test.py b/tests/tomography_test.py
index d39837d7..1775f470 100644
--- a/tests/tomography_test.py
+++ b/tests/tomography_test.py
@@ -26,7 +26,7 @@
 
 from pytket import Circuit, Bit, Qubit
 from pytket.extensions.qiskit import AerBackend  # type: ignore
-import qiskit.providers.aer.noise as noise  # type: ignore
+import qiskit_aer.noise as noise  # type: ignore
 import numpy as np  # type: ignore
 
 
diff --git a/tests/zne_test.py b/tests/zne_test.py
index 579ca9b2..539a6de2 100644
--- a/tests/zne_test.py
+++ b/tests/zne_test.py
@@ -39,9 +39,9 @@
 import math
 import numpy as np  # type: ignore
 from qermit import AnsatzCircuit, ObservableExperiment  # type: ignore
-import qiskit.providers.aer.noise as noise  # type: ignore
+import qiskit_aer.noise as noise  # type: ignore
 from pytket.circuit import OpType  # type: ignore
-from qiskit import IBMQ  # type: ignore
+from qiskit_ibm_provider import IBMProvider
 import pytest
 from pytket.circuit import Node  # type: ignore
 from qermit.noise_model import MockQuantinuumBackend  # type: ignore
@@ -71,7 +71,7 @@
 noisy_backend = AerBackend(noise_model)
 
 
-skip_remote_tests: bool = not IBMQ.stored_account()
+skip_remote_tests: bool = not IBMProvider.saved_accounts()
 REASON = "IBMQ account not configured"