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java.nio.file.NoSuchFileException upon generation. #32

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fac2003 opened this issue Jul 10, 2018 · 1 comment
Open

java.nio.file.NoSuchFileException upon generation. #32

fac2003 opened this issue Jul 10, 2018 · 1 comment
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@fac2003
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fac2003 commented Jul 10, 2018

/Users/fac2003/MPSProjects/git/MetaR/solutions/scRNA/source_gen/scRNA/alignment/compareP1P2_script.R
java.nio.file.NoSuchFileException: /Users/fac2003/MPSProjects/git/MetaR/solutions/scRNA/source_gen/scRNA/alignment/compareP1P2_script.R
at sun.nio.fs.UnixException.translateToIOException(UnixException.java:86)
at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:102)
at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:107)
at sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:214)
at java.nio.file.Files.newByteChannel(Files.java:361)
at java.nio.file.Files.newByteChannel(Files.java:407)
at java.nio.file.Files.readAllBytes(Files.java:3152)
at org.campagnelab.runR.plugin.R2_Configuration_RunProfileState$3.run(R2_Configuration_RunProfileState.java:131)
at jetbrains.mps.smodel.WorkbenchModelAccess.lambda$runReadAction$0(WorkbenchModelAccess.java:77)
at com.intellij.openapi.application.impl.ApplicationImpl.runReadAction(ApplicationImpl.java:897)
at jetbrains.mps.smodel.WorkbenchModelAccess.runReadAction(WorkbenchModelAccess.java:74)
at jetbrains.mps.smodel.ModelAccessBase.runReadAction(ModelAccessBase.java:53)
at org.campagnelab.runR.plugin.R2_Configuration_RunProfileState.execute(R2_Configuration_RunProfileState.java:120)
at com.intellij.execution.runners.DefaultProgramRunnerKt.executeState(DefaultProgramRunner.kt:34)
at com.intellij.execution.runners.DefaultProgramRunner.doExecute(DefaultProgramRunner.kt:28)
at com.intellij.execution.runners.GenericProgramRunner$execute$$inlined$runProfileStarter$1.executeAsync(GenericProgramRunner.kt:69)
at com.intellij.execution.runners.GenericProgramRunnerKt$startRunProfile$$inlined$runProfileStarter$1.executeAsync(GenericProgramRunner.kt:69)
at com.intellij.execution.impl.ExecutionManagerKtImpl$startRunProfile$startRunnable$1.run(ExecutionManagerKtImpl.kt:75)
at com.intellij.openapi.application.TransactionGuardImpl.runSyncTransaction(TransactionGuardImpl.java:88)
at com.intellij.openapi.application.TransactionGuardImpl.lambda$submitTransaction$1(TransactionGuardImpl.java:111)
at com.intellij.openapi.application.TransactionGuardImpl.submitTransaction(TransactionGuardImpl.java:120)
at com.intellij.openapi.application.TransactionGuard.submitTransaction(TransactionGuard.java:122)
at com.intellij.execution.impl.ExecutionManagerKtImpl$startRunProfile$2.run(ExecutionManagerKtImpl.kt:128)
at com.intellij.openapi.project.DumbServiceImpl.doRun(DumbServiceImpl.java:366)
at com.intellij.openapi.project.DumbServiceImpl.updateFinished(DumbServiceImpl.java:358)
at com.intellij.openapi.application.TransactionGuardImpl.runSyncTransaction(TransactionGuardImpl.java:88)
at com.intellij.openapi.application.TransactionGuardImpl.lambda$pollQueueLater$0(TransactionGuardImpl.java:74)
at com.intellij.openapi.application.impl.LaterInvocator$FlushQueue.doRun(LaterInvocator.java:447)
at com.intellij.openapi.application.impl.LaterInvocator$FlushQueue.runNextEvent(LaterInvocator.java:431)
at com.intellij.openapi.application.impl.LaterInvocator$FlushQueue.run(LaterInvocator.java:415)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:762)
at java.awt.EventQueue.access$500(EventQueue.java:98)
at java.awt.EventQueue$3.run(EventQueue.java:715)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:732)
at com.intellij.ide.IdeEventQueue.defaultDispatchEvent(IdeEventQueue.java:786)
at com.intellij.ide.IdeEventQueue._dispatchEvent(IdeEventQueue.java:727)
at com.intellij.ide.IdeEventQueue.dispatchEvent(IdeEventQueue.java:395)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

@manuelesimi manuelesimi self-assigned this Jul 11, 2018
@manuelesimi
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I rewrote the GenerateThenMake before task. Most of the times, the error does not occur now, but I still got it two times out of several tests.

I posted on the mps support's community to get advice. Here's the post:

https://mps-support.jetbrains.com/hc/en-us/community/posts/360000214779-Run-Configuration-and-Indices

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