disease.mcf

Node: dcid:Disease
name: "Disease"
typeOf: schema:Class
subClassOf: schema:Thing
description: "Disease - a defined disorder with a set of symptoms that effect the biological processes of a living entity and is not the direct result of physical injury."
sameAs: "https://disease-ontology.org/"

Node: dcid:DiseaseGeneAssociation
name: "DiseaseGeneAssociation"
typeOf: schema:Class
subClassOf: dcs:Disease
description: "The association of a disease with a gene."

Node: dcid:DiseaseSymptomAssociation
name: "DiseaseSymptomAssociation"
typeOf: schema:Class
subClassOf: dcs:Disease
description: "The association of a disease with a symptom."

Node: dcid:MeSHConcept
name: "MeSHConcept"
typeOf: schema:Class
subClassOf: dcs:MeSHDescriptor
description: "The bearer of linguistic meaning in MeSH as defined by the ScopeNote, comprising a DescriptorRecord or SupplementalRecord or QualifierRecord, and consisting of Term elements. One of the three main objects in the MeSH XML (the others being the record, and term). A single record will have one or more concepts, one of which is the preferred concept of the record. A Concept will have one or more terms, one of which is the preferred term for the concept. Referred to uniquely by both a ConceptUI and a ConceptName."
sameAs: "https://www.nlm.nih.gov/mesh/xml_data_elements.html#Concept"

Node: dcid:MeSHDescriptor
name: "MeSHDescriptor"
typeOf: schema:Class
subClassOf: schema:Intangible
description: "Cluster of one or more concepts used for subject indexing and retrieval. Identified uniquely by a DescriptorUI and DescriptorName. A Descriptor. A Descriptor record. Also known as Main Heading. (Note that this differs from the MEDLINE MeshHeading element. For example, the MEDLINE element includes both the Descriptor name and the Qualifier name assigned to a citation.)."
sameAs: "https://www.nlm.nih.gov/mesh/xml_data_elements.html#DescriptorRecord"

Node: dcid:MeSHQualifier
name: "MeSHQualifier"
typeOf: schema:Class
subClassOf: schema:Intangible
description: "Seven-character alpha-numeric string uniquely identifying a QualifierRecord and, along with the QualifierName, used to represent the Qualifier record in other elements. MeSHQualifiers are used to give additional context to MeSHDescriptor. MeSH has rules governing which Qualifiers can be used with a given Descriptor, as well as which MeSHQualifers cannot be used with a given MeSHDescriptor."
sameAs: "https://www.nlm.nih.gov/mesh/xml_data_elements.html#QualifierUI"

Node: dcid:MeSHSupplementaryRecord
name: "MeSHSupplementaryRecord"
typeOf: schema:Class
subClassOf: dcs:MeSHDescriptor
description: "Cluster of one or more concepts used for subject indexing and retrieval. Identified uniquely by a SupplementalRecordUI and SupplementalRecordName. SCR. Supplemental Record. Formerly known as Supplementary Chemical Records."
sameAs: "https://www.nlm.nih.gov/mesh/xml_data_elements.html#SupplementalRecord"

Node: dcid:MeSHTerm
name: "MeSHTerm"
typeOf: schema:Class
subClassOf: dcs:MeSHConcept
description: "Alpha-numeric string which comprises the basic unit of the MeSH vocabulary. Also functions as the name of a Descriptor and concept. The term itself is the String element."
sameAs: "https://www.nlm.nih.gov/mesh/xml_data_elements.html#Term"

Node: dcid:diseaseOntologyID
name: "diseaseOntologyID"
typeOf: schema:Property
rangeIncludes: dcs:Disease
domainIncludes: dcs:Disease
description: "The disease ontology identifier for the disease specified by http://disease-ontology.org/."

Node: dcid:associationSource
name: "associationSource"
typeOf: schema:Property
rangeIncludes: dcs:AssociationSourceEnum
domainIncludes: dcs:DiseaseGeneAssociation
description: "How the association between a disease and a gene was made."

Node: dcid:associationIdentifier
name: "associationIdentifier"
typeOf: schema:Property
rangeIncludes: schema:Text
domainIncludes: dcs:DiseaseGeneAssociation
description: "Identifier for disease-gene association source."

Node: dcid:associationScore
name: "associationScore"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseGeneAssociation
description: "The score for the association between the disease and the gene."

Node: dcid:associationConfidenceInterval
name: "associationConfidenceInterval"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseGeneAssociation
description: "The confidence interval of the score for the association between the disease and the gene."

Node: dcid:associationStatus
name: "associationStatus"
typeOf: schema:Property
rangeIncludes: dcs:DiseaseGeneAssociationStatusEnum
domainIncludes: dcs:DiseaseGeneAssociation
description: "The status of the association between the disease and the gene."

Node: dcid:experimentSampleCount
name: "experimentSampleCount"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseGeneAssociation
description: "The number of samples in the experiment associating a gene with a disease ontology ID."

Node: dcid:experimentPValue
name: "experimentPValue"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseGeneAssociation
description: "The p-value of the experiment associating a gene with a disease ontology ID."

Node: dcid:nationalLibraryOfMedicineClassificationNumber
name: "nationalLibraryOfMedicineClassificationNumber"
typeOf: schema:Property
rangeIncludes: schema:Text
domainIncludes: dcs:MeSHDescriptor
description: "Classification Number provided by the National Library of Medicine (NLM) Cataloging and Metadata Management Section (CAMMS)."

Node: dcid:isPharmacologicalActionSubstance
name: "isPharmacologicalActionSubstance"
typeOf: schema:Property
rangeIncludes: schema:Boolean
domainIncludes: dcs:MeSHDescriptor, dcs:MeSHSupplementaryRecord
description: "A MeSHDescriptor or MeSHSupplementaryRecord, which has a pharmacological action."

Node: dcid:medicalSubjectHeadingConceptID
name: "medicalSubjectHeadingConceptID"
typeOf: schema:Property
rangeIncludes: dcs:MeSHConcept, schema:Text
domainIncludes: dcs:Disease, dcs:MeSHConcept
description: "A unique ID for a Medical Subject Heading Concept record."

Node: dcid:medicalSubjectHeadingDescriptorID
typeOf: schema:Property
name: "medicalSubjectHeadingDescriptorID"
rangeIncludes: dcs:MeSHDescriptor, schema:Text
domainIncludes: dcs:Disease, dcs:GeneticVariant, dcs:MeSHConcept, dcs:MeSHDescriptor, dcs:MeSHQualifier, dcs:MeSHSupplementaryRecord
description: "A unique ID for a Medical Subject Heading Descriptor record."

Node: dcid:medicalSubjectHeadingQualifierAbbreviation
name: "medicalSubjectHeadingQualifierAbbreviation"
typeOf: schema:Property
domainIncludes: dcs:MeSHQualifier
rangeIncludes: schema:Text
description: "Qualifier Abbreviation."

Node: dcid:medicalSubjectHeadingSupplementaryRecordID
name: "medicalSubjectHeadingSupplementaryRecordID"
typeOf: schema:Property
rangeIncludes: dcs:MeSHSupplementaryRecord, schema:Text
domainIncludes: dcs:ChemicalCompound, dcs:MeSHSupplementaryRecord
description: "A unique ID for a Medical Subject Heading supplementary record."

Node: dcid:medicalSubjectHeadingTermID
name: "medicalSubjectHeadingTermID"
typeOf: schema:Property
rangeIncludes: dcs:MeSHTerm, schema:Text
domainIncludes: dcs:MeSHConcept, dcs:MeSHTerm
description: "A unique ID for a Medical Subject Heading Term record."

Node: dcid:medicalSubjectHeadingTreeNumber
name: "medicalSubjectHeadingTreeNumber"
typeOf: schema:Property
rangeIncludes: schema:Text
domainIncludes: dcs:MeSHDescriptor, dcs:MeSHQualifier
description: "Alpha-numeric string referring to location within a MeSH Descriptor or Qualifier hierarchy."

Node: dcid:medicalSubjectHeadingQualifierID
name: "medicalSubjectHeadingQualifierID"
typeOf: schema:Property
rangeIncludes: dcs:MeSHQualifier, schema:Text
domainIncludes: dcs:MeSHConcept, dcs:MeSHQualifier
description: "A unique ID for a Medical Subject Heading Qualifier record."

Node: dcid:associationCooccurrence
name: "associationCooccurrence"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseSymptomAssociation
description: "The number of PubMed publications common to a disease and symptom association."

Node: dcid:associationExpectedCooccurrence
name: "associationExpectedCooccurrence"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseSymptomAssociation
description: "The expected number of PubMed publications common to a disease and symptom association."

Node: dcid:associationPublicationCount
name: "associationPublicationCount"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseSymptomAssociation
description: "The number of PubMed publications expected to be common to a disease and symptom."

Node: dcid:associationEnrichment
name: "associationEnrichment"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseSymptomAssociation
description: "The enrichment of publication cooccurrence associating a disease and symptom."

Node: dcid:associationOddsRatio
name: "associationOddsRatio"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseSymptomAssociation
description: "The odds of actual publication cooccurrence rate associating a disease and symptom."

Node: dcid:associationFisherTest
name: "associationFisherTest"
typeOf: schema:Property
rangeIncludes: schema:Number
domainIncludes: dcs:DiseaseSymptomAssociation
description: "Fisher test value for non-random association of a disease and symptom."

Node: dcid:associationPMID
name: "associationPMID"
typeOf: schema:Property
rangeIncludes: schema:Text
domainIncludes: dcs:DiseaseSymptomAssociation
description: "A PubMed identifier for a publication containing reference to a disease and symptom."

Node: dcid:alternateDiseaseOntologyID
typeOf: schema:Property
name: "alternateDiseaseOntologyID"
domainIncludes: dcs:Disease
rangeIncludes: schema:Text
description: "An alternative disease ontology ID (DOID) associated with a disease."

Node: dcid:diseaseSynonym
typeOf: schema:Property
name: "diseaseSynonym"
domainIncludes: dcs:Disease
rangeIncludes: schema:Text
description: "A synonym for a disease name."

Node: dcid:unifiedMedicalLanguageSystemConceptUniqueIdentifier
typeOf: schema:Property
name: "unifiedMedicalLanguageSystemConceptUniqueIdentifier"
domainIncludes: dcs:Disease
rangeIncludes: schema:Text
description: "A concept is a meaning. A meaning can have many different names. A key goal of Metathesaurus construction is to understand the intended meaning of each name in each source vocabulary and to link all the names from all of the source vocabularies that mean the same thing (the synonyms). Concept Unique Identifier (CUI) contain the letter C followed by seven numbers. In the example on the right the CUI is C0018681."
descriptorUrl: "https://www.nlm.nih.gov/research/umls/new_users/online_learning/Meta_005.html"

Node: dcid:geneticAndRareDiseasesID
typeOf: schema:Property
name: "geneticAndRareDiseasesID"
domainIncludes: dcs:Disease
rangeIncludes: schema:Text
description: "The identifier for the disease in the Genetic and Rare Diseases (GARD) database."
sameAs: "https://rarediseases.info.nih.gov/"

Node: dcid:nationalCancerInstituteID
typeOf: schema:Property
name: "nationalCancerInstituteID"
domainIncludes: dcs:Disease
rangeIncludes: schema:Text
description: "The identifier for the disease in the National Cancer Institute (NCI) thesaurus."
sameAs: "https://www.cancer.gov/"

Node: dcid:internationalClassificationOfDiseasesOntologyID
typeOf: schema:Property
name: "internationalClassificationOfDiseasesOntologyID"
domainIncludes: dcs:Disease
rangeIncludes: schema:Text
description: "International Classification of Diseases Ontology (ICDO) is an ontology representation of the ICD system, which includes ICD-10, ICD-9, and the future ICD-11."

Node: dcid:icd10CMCode
typeOf: schema:Property
name: "icd10CMCode"
domainIncludes: dcs:Disease
rangeIncludes: dcs:ICD10Code
description: "The disease diagnosis code for version 10 of the International Classification of Disease Ontology."

Node: dcid:icd10ApproximateSynonym
typeOf: dcs:Property
name: "icd10ApproximateSynonym"
domainIncludes: dcs:Disease
rangeIncludes: dcs:ICD10Code

Node: dcid:icd9CMID
typeOf: schema:Property
name: "icd9CMID"
domainIncludes: dcs:Disease
rangeIncludes: schema:Text
description: "The disease diagnosis code for version 9 of the International Classification of Disease Ontology."

Node: dcid:medDraID
typeOf: schema:Property
name: "medDraID"
domainIncludes: dcs:Disease
rangeIncludes: schema:Text
description: "The disease identifiers extracted from the medDRA medical terminology."
sameAs: "https://www.meddra.org/"