You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
When running the test data for MHC-I I obtain different clustering results than in the mouse_liver_report.html file.
My results are as follow:
Compared to:
Perhaps this is due to a version difference in gibbscluster using different default arguments ?
Here is the tmp file with the gibbscluster info:
/Users/CS/Downloads/gibbscluster-2.0/bin/gibbs_cluster_1.2.2_DB.Darwin_x86_64 -mhc1 -trash -l 9 -g 1 -ts 1.5 -blf /Users/CS/Downloads/gibbscluster-2.0/data/blosum%i.freq_rownorm -blm 62 -base 2 -bg 1 -i 10 -s 1 -nt 20 -fr 20 -fs 100 -wlc 200 -swt 0 -lambda 0.8 -dlen 4 -ilen 1 -findels 10 -sigma 5 /private/tmp/mhcvizpipe/2022-10-11_12-13-46.252971/gibbs/mouse_liver.txt/H-2-Db/1groups_1738/data/pepdata.txt
# Tue Oct 11 12:14:01 2022
# User: CS
# PWD : /private/tmp/mhcvizpipe/2022-10-11_12-13-46.252971/gibbs/mouse_liver.txt/H-2-Db
# Host: Darwin CRHSJ105816.local 21.6.0 x86_64
# -mhc1 1 Use peptides of fixed length, no window shift
# -trash 1 Use trash cluster to remove outliers
# -l 9 Motif length
# -g 1 Number of initial clusters
# -ts 1.500000 Start temperature
# -blf /Users/CS/Downloads/gibbscluster-2.0/data/blosum%i.freq_rownorm Real value blosum matrix filename
# -blm 62 Blosum matrix number
# -base 2.000000 Baseline value to discard to trash
# -bg 1 [0] Flat (0.05) [1] Precalculated [2] From data
# -i 10 Number of iterations per train example
# -s 1 Seed [-1] Default, [0] Time [>0] Specific seed
# -nt 20 Number of temperature steps
# -fr 20 Interval between Single sequence moves (if -mhc1 == 1)
# -fs 100 Interval between Phase shift moves
# -wlc 200.000000 Weigth on low count
# -swt 0 [0] 1/ns [1] Clustering [2] No sequence weighting
# -lambda 0.800000 Penalty factor for overlapping clusters
# -dlen 4 Max length of deletions
# -ilen 1 Max length of insertions
# -findels 10 Interval between Indel moves
# -sigma 5.000000 Weight on blosum for small cluster confidence
# Command line parameters set to:
# [-l int] 9 Motif length
# [-g int] 1 Number of initial clusters
# [-trash] 1 Use trash cluster to remove outliers
# [-i int] 10 Number of iterations per train example
# [-s int] 1 Seed [-1] Default, [0] Time [>0] Specific seed
# [-f filename] 0 File for frequency matrices
# [-m filename] 0 File for log-odds matrices
# [-a filename] aln.txt File for multiple alignments
# [-pc] 0 Print core of alignment
# [-c filename] core.txt File for core
# [-alp string] ARNDCQEGHILKMFPSTWYV Amino acid alphabet
# [-bg int] 1 [0] Flat (0.05) [1] Precalculated [2] From data
# [-base float] 2.000000 Baseline value to discard to trash
# [-mhc1] 1 Use peptides of fixed length, no window shift
# [-ts float] 1.500000 Start temperature
# [-te float] 0.000010 Final temperature
# [-nt int] 20 Number of temperature steps
# [-ms int] 3 Max phase shift distance
# [-fs int] 100 Interval between Phase shift moves
# [-findels int] 10 Interval between Indel moves
# [-fr int] 20 Interval between Single sequence moves (if -mhc1 == 1)
# [-lambda float] 0.800000 Penalty factor for overlapping clusters
# [-sigma float] 5.000000 Weight on blosum for small cluster confidence
# [-noph] 0 Exclude phase shift move
# [-r float] 5.000000 Scale factor for phase shift moves
# [-wlc float] 200.000000 Weigth on low count
# [-blf filename] /Users/CS/Downloads/gibbscluster-2.0/data/blosum%i.freq_rownorm Real value blosum matrix filename
# [-blm int] 62 Blosum matrix number
# [-cX int] 1 [0] Count X as A, [1] Exclude X from count
# [-v] 0 Verbose mode
# [-debug] 0 Debug model
# [-cthr float] 0.620000 Clustering threshold for sequence weighting
# [-swt int] 0 [0] 1/ns [1] Clustering [2] No sequence weighting
# [-w string] 1,3,1,1,1,1,1,1,3 Weigths on positions
# [-iw] 0 Include weights on positions
# [-noc float] 0.000000 Log-odds score assignment to no count elements
# [-p1a] 0 Allow only Hydrophobic AA at P1
# [-p1l filename] ILVMFYW Allowed letters at P1 [Only with -p1a option]
# [-factor float] 2.885400 Scale factor for matrix 2/log2
# [-cntthr int] 0 Low bound for amino acids counts to include in matrix
# [-p1s] 0 Penalize disallowed P1 amino acids in shift
# [-pkld] 0 Print KLD list (file to -kldf)
# [-kldf string] kldfq.txt Print complete list of KLD values to specified file
# [-kldq int] 1000 Total datapoints when printing KLDs
# [-ilen int] 1 Max length of insertions
# [-dlen int] 4 Max length of deletions
# [-xc] 0 Exclude final check of all peptides to clusters
# Random seed is 1
# Read 332 elements on seqlist /private/tmp/mhcvizpipe/2022-10-11_12-13-46.252971/gibbs/mouse_liver.txt/H-2-Db/1groups_1738/data/pepdata.txt
# Number of temperature steps 20 dt 0.078947
# Back ground frequences
# 0 A 0.07400
# 1 R 0.05200
# 2 N 0.04500
# 3 D 0.05400
# 4 C 0.02500
# 5 Q 0.03400
# 6 E 0.05400
# 7 G 0.07400
# 8 H 0.02600
# 9 I 0.06800
# 10 L 0.09900
# 11 K 0.05800
# 12 M 0.02500
# 13 F 0.04700
# 14 P 0.03900
# 15 S 0.05700
# 16 T 0.05100
# 17 W 0.01300
# 18 Y 0.03200
# 19 V 0.07300
# Read_realblosum done. Alphabet ARNDCQEGHILKMFPSTWYV
# G 0 332
# G 1 0
### Initial alignments weighed KLD sum 0.000000
# Doing temprature step 0 1.500000
# Doing temprature step 1 1.421053
# Doing temprature step 2 1.342106
# Doing temprature step 3 1.263160
# Doing temprature step 4 1.184213
# Doing temprature step 5 1.105266
# Doing temprature step 6 1.026319
# Doing temprature step 7 0.947372
# Doing temprature step 8 0.868425
# Doing temprature step 9 0.789479
# Doing temprature step 10 0.710532
# Doing temprature step 11 0.631585
# Doing temprature step 12 0.552638
# Doing temprature step 13 0.473691
# Doing temprature step 14 0.394744
# Doing temprature step 15 0.315798
# Doing temprature step 16 0.236851
# Doing temprature step 17 0.157904
# Doing temprature step 18 0.078957
# Doing temprature step 19 0.000010
## Sequence alignment for group 0
G 0 0 FQAPNVTFL FQAPNVTFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.648 bgG -1 bgS 2.000 cS 13.048
G 0 1 LALINGTQM LALINGTQM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.062 bgG -1 bgS 2.000 cS 11.462
G 0 2 VSLLNVYYI VSLLNVYYI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.539 bgG -1 bgS 2.000 cS 13.939
G 0 3 SSFHFPYL SSF-HFPYL o 0 ip 3 il 1 dp -99 dl -99 Peplist sS 16.355 bgG -1 bgS 2.000 cS 14.755
G 0 4 AGIENKFGLYL AGIENKLYL o 0 ip -99 il -99 dp 6 dl 2 Peplist sS 17.314 bgG -1 bgS 2.000 cS 15.714
G 0 5 ASPEGQDYL ASPEGQDYL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.781 bgG -1 bgS 2.000 cS 17.181
G 0 6 SILVNQEVL SILVNQEVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.217 bgG -1 bgS 2.000 cS 16.617
G 0 7 RGVSNGTHV RGVSNGTHV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.854 bgG -1 bgS 2.000 cS 13.254
G 0 8 SALRYNTL SALR-YNTL o 0 ip 4 il 1 dp -99 dl -99 Peplist sS 13.269 bgG -1 bgS 2.000 cS 11.669
G 0 9 SAKMNLVVI SAKMNLVVI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.840 bgG -1 bgS 2.000 cS 10.240
G 0 10 YAVGNHDFI YAVGNHDFI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.728 bgG -1 bgS 2.000 cS 14.128
G 0 11 SALQNAESDRL SALQNAERL o 0 ip -99 il -99 dp 7 dl 2 Peplist sS 21.174 bgG -1 bgS 2.000 cS 19.574
G 0 12 VQPFNYVTL VQPFNYVTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.867 bgG -1 bgS 2.000 cS 17.267
G 0 13 IAPSFVKGF IAPSFVKGF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 4.706 bgG -1 bgS 2.000 cS 3.106
G 0 14 LNYNFLETL LNYNFLETL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 7.640 bgG -1 bgS 2.000 cS 6.040
G 0 15 AGVINRERM AGVINRERM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.771 bgG -1 bgS 2.000 cS 14.171
G 0 16 VAVYNHYKRI VAVYNHYKI o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 12.482 bgG -1 bgS 2.000 cS 10.882
G 0 17 FSIFNRSIDAF FSIFNIDAF o 0 ip -99 il -99 dp 5 dl 2 Peplist sS 14.690 bgG -1 bgS 2.000 cS 13.090
G 0 18 STIRNADVI STIRNADVI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.808 bgG -1 bgS 2.000 cS 15.208
G 0 19 TILEFSQNM TILEFSQNM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.689 bgG -1 bgS 2.000 cS 8.089
G 0 20 SQLRNEVAI SQLRNEVAI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.960 bgG -1 bgS 2.000 cS 11.360
G 0 21 FVISNYREQL FVISNYEQL o 0 ip -99 il -99 dp 6 dl 1 Peplist sS 16.393 bgG -1 bgS 2.000 cS 14.793
G 0 22 KAISNSHYVL KAISNSHYL o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 18.248 bgG -1 bgS 2.000 cS 16.648
G 0 23 STIKNANFV STIKNANFV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.743 bgG -1 bgS 2.000 cS 10.143
G 0 24 HSLENSLIDIM HSLENIDIM o 0 ip -99 il -99 dp 5 dl 2 Peplist sS 17.145 bgG -1 bgS 2.000 cS 15.545
G 0 25 ASVINGHTL ASVINGHTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.672 bgG -1 bgS 2.000 cS 15.072
G 0 26 APQGSLGEYL AQGSLGEYL o 0 ip -99 il -99 dp 1 dl 1 Peplist sS 8.737 bgG -1 bgS 2.000 cS 7.137
G 0 27 AAIVDGDRI AAIVDGDRI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.418 bgG -1 bgS 2.000 cS 7.818
G 0 28 SNVDLLEEL SNVDLLEEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.675 bgG -1 bgS 2.000 cS 8.075
G 0 29 AVVLNATWL AVVLNATWL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.448 bgG -1 bgS 2.000 cS 9.848
G 0 30 RAIYNNMKQFI RAIYNKQFI o 0 ip -99 il -99 dp 5 dl 2 Peplist sS 15.365 bgG -1 bgS 2.000 cS 13.765
G 0 31 TSPVNEKTL TSPVNEKTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.817 bgG -1 bgS 2.000 cS 16.217
G 0 32 TAHYNRERI TAHYNRERI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.560 bgG -1 bgS 2.000 cS 10.960
G 0 33 KSTVNKWTL KSTVNKWTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.457 bgG -1 bgS 2.000 cS 12.857
G 0 34 VSLTHHAGL VSLTHHAGL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 8.192 bgG -1 bgS 2.000 cS 6.592
G 0 35 YSSENISNF YSSENISNF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.912 bgG -1 bgS 2.000 cS 12.312
G 0 36 SSITMSQGGM SSITMSQGM o 0 ip -99 il -99 dp 7 dl 1 Peplist sS 11.577 bgG -1 bgS 2.000 cS 9.977
G 0 37 IAARNQENL IAARNQENL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.467 bgG -1 bgS 2.000 cS 12.867
G 0 38 VMPQNQKAI VMPQNQKAI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.724 bgG -1 bgS 2.000 cS 13.124
G 0 39 RQPNPPLIL RQPNPPLIL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 4.673 bgG -1 bgS 2.000 cS 3.073
G 0 40 FNLVNNALL FNLVNNALL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.438 bgG -1 bgS 2.000 cS 8.838
G 0 41 MNMEITDVL MNMEITDVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 3.767 bgG -1 bgS 2.000 cS 2.167
G 0 42 SNVVNQANL SNVVNQANL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.264 bgG -1 bgS 2.000 cS 14.664
G 0 43 YSLFNVISI YSLFNVISI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.404 bgG -1 bgS 2.000 cS 10.804
G 0 44 YGVSNLQEF YGVSNLQEF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.600 bgG -1 bgS 2.000 cS 15.000
G 0 45 GGLQNIAVV GGLQNIAVV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.674 bgG -1 bgS 2.000 cS 10.074
G 0 46 KSLLLLTTL KSLLLLTTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.529 bgG -1 bgS 2.000 cS 9.929
G 0 47 AAPRSFIFL AAPRSFIFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.369 bgG -1 bgS 2.000 cS 10.769
G 0 48 SAITNVAKI SAITNVAKI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.875 bgG -1 bgS 2.000 cS 15.275
G 0 49 RAPSNVSTV RAPSNVSTV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.326 bgG -1 bgS 2.000 cS 15.726
G 0 50 TALRNLGSL TALRNLGSL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.840 bgG -1 bgS 2.000 cS 11.240
G 0 51 LSMNPMLL LSM-NPMLL o 0 ip 3 il 1 dp -99 dl -99 Peplist sS 10.791 bgG -1 bgS 2.000 cS 9.191
G 0 52 ISLKNSQEI ISLKNSQEI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.721 bgG -1 bgS 2.000 cS 14.121
G 0 53 AMSPVTITTI ASPVTITTI o 0 ip -99 il -99 dp 1 dl 1 Peplist sS 14.228 bgG -1 bgS 2.000 cS 12.628
G 0 54 STITNPSAI STITNPSAI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.933 bgG -1 bgS 2.000 cS 14.333
G 0 55 AMYVHAYTL AMYVHAYTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.891 bgG -1 bgS 2.000 cS 8.291
G 0 56 EAIQNSTSI EAIQNSTSI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.916 bgG -1 bgS 2.000 cS 12.316
G 0 57 FSPTNYHFL FSPTNYHFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 22.222 bgG -1 bgS 2.000 cS 20.622
G 0 58 GMKLNLDYL GMKLNLDYL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.349 bgG -1 bgS 2.000 cS 7.749
G 0 59 RSPINVESL RSPINVESL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 20.677 bgG -1 bgS 2.000 cS 19.077
G 0 60 AAPTSAARV AAPTSAARV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 8.662 bgG -1 bgS 2.000 cS 7.062
G 0 61 SSPANISSL SSPANISSL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 20.529 bgG -1 bgS 2.000 cS 18.929
G 0 62 FMPPVPITSPI FMPPVPITI o 0 ip -99 il -99 dp 8 dl 2 Peplist sS 7.681 bgG -1 bgS 2.000 cS 6.081
G 0 63 SAPKSISAL SAPKSISAL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.189 bgG -1 bgS 2.000 cS 12.589
G 0 64 RALDNDQHL RALDNDQHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.272 bgG -1 bgS 2.000 cS 14.672
G 0 65 ATVSNGPFL ATVSNGPFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.206 bgG -1 bgS 2.000 cS 13.606
G 0 66 VNFEKFWEL VNFEKFWEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 6.651 bgG -1 bgS 2.000 cS 5.051
G 0 67 FMLALKENI FMLALKENI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 6.852 bgG -1 bgS 2.000 cS 5.252
G 0 68 FSNKNLEEL FSNKNLEEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.179 bgG -1 bgS 2.000 cS 14.579
G 0 69 HSPTNTVHM HSPTNTVHM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 21.028 bgG -1 bgS 2.000 cS 19.428
G 0 70 AAPTNRQIEIL AAPTNIEIL o 0 ip -99 il -99 dp 5 dl 2 Peplist sS 23.298 bgG -1 bgS 2.000 cS 21.698
G 0 71 GALGNLTVV GALGNLTVV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.011 bgG -1 bgS 2.000 cS 9.411
G 0 72 YKYPSDLPYM YKPSDLPYM o 0 ip -99 il -99 dp 2 dl 1 Peplist sS 13.019 bgG -1 bgS 2.000 cS 11.419
G 0 73 KVIKNFTEI KVIKNFTEI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.226 bgG -1 bgS 2.000 cS 12.626
G 0 74 RQRENFPNL RQRENFPNL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.826 bgG -1 bgS 2.000 cS 14.226
G 0 75 ASVLNVNHI ASVLNVNHI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.736 bgG -1 bgS 2.000 cS 14.136
G 0 76 FVIFNNTYI FVIFNNTYI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.436 bgG -1 bgS 2.000 cS 10.836
G 0 77 QQYRFSVIM QQYRFSVIM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 6.377 bgG -1 bgS 2.000 cS 4.777
G 0 78 STVIHILYL STVIHILYL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.927 bgG -1 bgS 2.000 cS 8.327
G 0 79 ISPQNMDIL ISPQNMDIL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.208 bgG -1 bgS 2.000 cS 13.608
G 0 80 RSHYNAKHL RSHYNAKHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.777 bgG -1 bgS 2.000 cS 11.177
G 0 81 AIMPNGDHI AIMPNGDHI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.614 bgG -1 bgS 2.000 cS 11.014
G 0 82 VAPGNQVTL VAPGNQVTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.553 bgG -1 bgS 2.000 cS 16.953
G 0 83 YQYQNIFGPL YQYQNIFGL o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 16.868 bgG -1 bgS 2.000 cS 15.268
G 0 84 RSVLNNQLL RSVLNNQLL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.184 bgG -1 bgS 2.000 cS 12.584
G 0 85 KSYVNPTEL KSYVNPTEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 20.224 bgG -1 bgS 2.000 cS 18.624
G 0 86 AVIQFLERI AVIQFLERI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.282 bgG -1 bgS 2.000 cS 8.682
G 0 87 SSPVSHTAV SSPVSHTAV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.503 bgG -1 bgS 2.000 cS 11.903
G 0 88 GFADSNSLEI FADSNSLEI o 1 ip -99 il -99 dp -99 dl -99 Peplist sS 6.562 bgG -1 bgS 2.000 cS 4.962
G 0 89 ATYTFIQQL ATYTFIQQL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.040 bgG -1 bgS 2.000 cS 11.440
G 0 90 AVLRNQIHV AVLRNQIHV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.053 bgG -1 bgS 2.000 cS 9.453
G 0 91 YSPVLQKPKF YSPVLQPKF o 0 ip -99 il -99 dp 6 dl 1 Peplist sS 13.961 bgG -1 bgS 2.000 cS 12.361
G 0 92 QTVENKETL QTVENKETL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.361 bgG -1 bgS 2.000 cS 15.761
G 0 93 TTHSNHEVL TTHSNHEVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.355 bgG -1 bgS 2.000 cS 14.755
G 0 94 VAVVNKVDI VAVVNKVDI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.721 bgG -1 bgS 2.000 cS 11.121
G 0 95 SGPALSTALL SGPALSTLL o 0 ip -99 il -99 dp 7 dl 1 Peplist sS 11.904 bgG -1 bgS 2.000 cS 10.304
G 0 96 YAPSIGFPYSL YAPSFPYSL o 0 ip -99 il -99 dp 4 dl 2 Peplist sS 16.724 bgG -1 bgS 2.000 cS 15.124
G 0 97 LGPINQWWL LGPINQWWL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.068 bgG -1 bgS 2.000 cS 13.468
G 0 98 QVYTFTERM QVYTFTERM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 8.111 bgG -1 bgS 2.000 cS 6.511
G 0 99 VLIPKLPQL VLIPKLPQL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 2.737 bgG -1 bgS 2.000 cS 1.137
G 0 100 YSPTGKEFV YSPTGKEFV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.996 bgG -1 bgS 2.000 cS 12.396
G 0 101 EAILNKYYL EAILNKYYL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.722 bgG -1 bgS 2.000 cS 12.122
G 0 102 VGVVSVEFI VGVVSVEFI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 8.568 bgG -1 bgS 2.000 cS 6.968
G 0 103 SALRFLNL SALRFL-NL o 0 ip 6 il 1 dp -99 dl -99 Peplist sS 13.777 bgG -1 bgS 2.000 cS 12.177
G 0 104 VQLENQMVL VQLENQMVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.420 bgG -1 bgS 2.000 cS 14.820
G 0 105 LGLSNLTHL LGLSNLTHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.485 bgG -1 bgS 2.000 cS 15.885
G 0 106 SAPLSPLKF SAPLSPLKF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.126 bgG -1 bgS 2.000 cS 7.526
G 0 107 VSNFSKDLL VSNFSKDLL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 2.910 bgG -1 bgS 2.000 cS 1.310
G 0 108 GSIINYMVVM GSIINYVVM o 0 ip -99 il -99 dp 6 dl 1 Peplist sS 14.418 bgG -1 bgS 2.000 cS 12.818
G 0 109 IAPLFYSL IAPL-FYSL o 0 ip 4 il 1 dp -99 dl -99 Peplist sS 10.722 bgG -1 bgS 2.000 cS 9.122
G 0 110 KGIGNKTEI KGIGNKTEI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.042 bgG -1 bgS 2.000 cS 11.442
G 0 111 SAPTFINF SAPTFI-NF o 0 ip 6 il 1 dp -99 dl -99 Peplist sS 15.740 bgG -1 bgS 2.000 cS 14.140
G 0 112 VSPRLTFL VSPR-LTFL o 0 ip 4 il 1 dp -99 dl -99 Peplist sS 15.416 bgG -1 bgS 2.000 cS 13.816
G 0 113 SSLHNLTFL SSLHNLTFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 19.636 bgG -1 bgS 2.000 cS 18.036
G 0 114 SSIVNKEGL SSIVNKEGL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 19.998 bgG -1 bgS 2.000 cS 18.398
G 0 115 SAVISLEGKPL SAVISLEGL o 0 ip -99 il -99 dp 8 dl 2 Peplist sS 11.037 bgG -1 bgS 2.000 cS 9.437
G 0 116 VAMANTVAM VAMANTVAM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.519 bgG -1 bgS 2.000 cS 9.919
G 0 117 LAVRNDEEL LAVRNDEEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.757 bgG -1 bgS 2.000 cS 12.157
G 0 118 SVLKNRPLSVM SVLKNRPVM o 0 ip -99 il -99 dp 7 dl 2 Peplist sS 15.646 bgG -1 bgS 2.000 cS 14.046
G 0 119 FAYEGRDYI FAYEGRDYI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.320 bgG -1 bgS 2.000 cS 10.720
G 0 120 GSIINISSI GSIINISSI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.134 bgG -1 bgS 2.000 cS 11.534
G 0 121 SSIQNPKVSL SSIQNPKVL o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 20.825 bgG -1 bgS 2.000 cS 19.225
G 0 122 VQLELIQTI VQLELIQTI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.440 bgG -1 bgS 2.000 cS 11.840
G 0 123 KTFQKLSNL KTFQKLSNL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 5.431 bgG -1 bgS 2.000 cS 3.831
G 0 124 TTLRNGEVL TTLRNGEVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.240 bgG -1 bgS 2.000 cS 14.640
G 0 125 RAIQNHSQTHL RAIQNQTHL o 0 ip -99 il -99 dp 5 dl 2 Peplist sS 22.391 bgG -1 bgS 2.000 cS 20.791
G 0 126 KALINADEL KALINADEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.161 bgG -1 bgS 2.000 cS 14.561
G 0 127 SQVYNDAHI SQVYNDAHI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.364 bgG -1 bgS 2.000 cS 11.764
G 0 128 AILERFPTI AILERFPTI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 8.140 bgG -1 bgS 2.000 cS 6.540
G 0 129 NQGTNVETI NQGTNVETI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.133 bgG -1 bgS 2.000 cS 11.533
G 0 130 FAHHNRYVL FAHHNRYVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.212 bgG -1 bgS 2.000 cS 11.612
G 0 131 TTVTNPEPM TTVTNPEPM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.772 bgG -1 bgS 2.000 cS 11.172
G 0 132 SIVFNGPHL SIVFNGPHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.112 bgG -1 bgS 2.000 cS 12.512
G 0 133 KAVENSSTAI KAVENSSTI o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 17.234 bgG -1 bgS 2.000 cS 15.634
G 0 134 RGPVFFINV RGPVFFINV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.571 bgG -1 bgS 2.000 cS 7.971
G 0 135 IQFSFKEKL IQFSFKEKL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.240 bgG -1 bgS 2.000 cS 8.640
G 0 136 SSLLNIQHF SSLLNIQHF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 20.232 bgG -1 bgS 2.000 cS 18.632
G 0 137 AGPSNFGTEL AGPSNFTEL o 0 ip -99 il -99 dp 6 dl 1 Peplist sS 22.764 bgG -1 bgS 2.000 cS 21.164
G 0 138 SQLSLLDYF SQLSLLDYF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.468 bgG -1 bgS 2.000 cS 10.868
G 0 139 AALSNPGAKM AALSNPAKM o 0 ip -99 il -99 dp 6 dl 1 Peplist sS 17.099 bgG -1 bgS 2.000 cS 15.499
G 0 140 SSVSNKTTL SSVSNKTTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 22.637 bgG -1 bgS 2.000 cS 21.037
G 0 141 HSIQNSQDM HSIQNSQDM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.145 bgG -1 bgS 2.000 cS 14.545
G 0 142 GSHTNIHLL GSHTNIHLL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.865 bgG -1 bgS 2.000 cS 12.265
G 0 143 FKVVPEMTEIL FVPEMTEIL o 0 ip -99 il -99 dp 1 dl 2 Peplist sS 11.126 bgG -1 bgS 2.000 cS 9.526
G 0 144 FASLPPPYQL FSLPPPYQL o 0 ip -99 il -99 dp 1 dl 1 Peplist sS 9.887 bgG -1 bgS 2.000 cS 8.287
G 0 145 AALKNAFSL AALKNAFSL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.407 bgG -1 bgS 2.000 cS 12.807
G 0 146 SGPENFQVG SGPENFQVG o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.549 bgG -1 bgS 2.000 cS 12.949
G 0 147 AGVVNKYEV AGVVNKYEV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.088 bgG -1 bgS 2.000 cS 11.488
G 0 148 KSYNFHTGL KSYNFHTGL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 8.098 bgG -1 bgS 2.000 cS 6.498
G 0 149 SSLKNVYFL SSLKNVYFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.596 bgG -1 bgS 2.000 cS 16.996
G 0 150 SAVVSWDVL SAVVSWDVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.202 bgG -1 bgS 2.000 cS 12.602
G 0 151 RGPPQYPLL RGPPQYPLL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 8.080 bgG -1 bgS 2.000 cS 6.480
G 0 152 FALVNGNNI FALVNGNNI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.128 bgG -1 bgS 2.000 cS 13.528
G 0 153 AMGTNDTVI AMGTNDTVI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.070 bgG -1 bgS 2.000 cS 7.470
G 0 154 VKVSNLPLYYL VKVSNLPYL o 0 ip -99 il -99 dp 7 dl 2 Peplist sS 14.640 bgG -1 bgS 2.000 cS 13.040
G 0 155 TGPSNVDKL TGPSNVDKL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 20.105 bgG -1 bgS 2.000 cS 18.505
G 0 156 LNPQHVQLL LNPQHVQLL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.085 bgG -1 bgS 2.000 cS 8.485
G 0 157 FQEENTENL FQEENTENL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.350 bgG -1 bgS 2.000 cS 13.750
G 0 158 RQFLNRDDI RQFLNRDDI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.443 bgG -1 bgS 2.000 cS 9.843
G 0 159 RSMQNYVQFL RSMQNYQFL o 0 ip -99 il -99 dp 6 dl 1 Peplist sS 19.617 bgG -1 bgS 2.000 cS 18.017
G 0 160 GTFVNGEFV GTFVNGEFV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.284 bgG -1 bgS 2.000 cS 7.684
G 0 161 AAPAPSLWTL AAPPSLWTL o 0 ip -99 il -99 dp 3 dl 1 Peplist sS 15.780 bgG -1 bgS 2.000 cS 14.180
G 0 162 YTLHNIDQL YTLHNIDQL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.932 bgG -1 bgS 2.000 cS 14.332
G 0 163 SSYRFVQNV SSYRFVQNV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.645 bgG -1 bgS 2.000 cS 11.045
G 0 164 RQVVHTETL RQVVHTETL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.860 bgG -1 bgS 2.000 cS 13.260
G 0 165 YAPGPGRSAL YAPPGRSAL o 0 ip -99 il -99 dp 3 dl 1 Peplist sS 10.185 bgG -1 bgS 2.000 cS 8.585
G 0 166 SQLELKSLI SQLELKSLI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.127 bgG -1 bgS 2.000 cS 8.527
G 0 167 TGTTNPFLL TGTTNPFLL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.758 bgG -1 bgS 2.000 cS 9.158
G 0 168 ASHLNLDAL ASHLNLDAL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.525 bgG -1 bgS 2.000 cS 13.925
G 0 169 SAIQNFTEKF SAIQNFTEF o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 19.979 bgG -1 bgS 2.000 cS 18.379
G 0 170 SSLLNNYVL SSLLNNYVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.495 bgG -1 bgS 2.000 cS 14.895
G 0 171 FQNVNSVTL FQNVNSVTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.190 bgG -1 bgS 2.000 cS 12.590
G 0 172 TAPLNTQIPTL TAPLNTQTL o 0 ip -99 il -99 dp 7 dl 2 Peplist sS 22.609 bgG -1 bgS 2.000 cS 21.009
G 0 173 TGIKNGVHFL TGIKNGVHL o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 16.208 bgG -1 bgS 2.000 cS 14.608
G 0 174 LGPKNGVYI LGPKNGVYI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.588 bgG -1 bgS 2.000 cS 13.988
G 0 175 SALVSSLHL SALVSSLHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.407 bgG -1 bgS 2.000 cS 9.807
G 0 176 LSPINHNTL LSPINHNTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.131 bgG -1 bgS 2.000 cS 16.531
G 0 177 KAPRNAAEF KAPRNAAEF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.462 bgG -1 bgS 2.000 cS 12.862
G 0 178 STIQNSDIIAVM STIQNSDVM o 0 ip -99 il -99 dp 7 dl 3 Peplist sS 19.527 bgG -1 bgS 2.000 cS 17.927
G 0 179 LALELSALI LALELSALI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 4.459 bgG -1 bgS 2.000 cS 2.859
G 0 180 RAPQNLFLVSL RAPQNLVSL o 0 ip -99 il -99 dp 5 dl 2 Peplist sS 20.204 bgG -1 bgS 2.000 cS 18.604
G 0 181 FAPPQGSPVM FAPQGSPVM o 0 ip -99 il -99 dp 2 dl 1 Peplist sS 15.227 bgG -1 bgS 2.000 cS 13.627
G 0 182 AGPTNSLKYVP AGPTNLKYV o 0 ip -99 il -99 dp 5 dl 1 Peplist sS 18.175 bgG -1 bgS 2.000 cS 16.575
G 0 183 SAVENVVKL SAVENVVKL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.980 bgG -1 bgS 2.000 cS 17.380
G 0 184 KGPSRTTKL KGPSRTTKL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.022 bgG -1 bgS 2.000 cS 10.422
G 0 185 FQVILLEHI FQVILLEHI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.638 bgG -1 bgS 2.000 cS 11.038
G 0 186 TALRLITAL TALRLITAL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.626 bgG -1 bgS 2.000 cS 9.026
G 0 187 VQLTLLTAI VQLTLLTAI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.092 bgG -1 bgS 2.000 cS 7.492
G 0 188 LGLRNVIYI LGLRNVIYI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.128 bgG -1 bgS 2.000 cS 9.528
G 0 189 SSVQNKEYL SSVQNKEYL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 24.719 bgG -1 bgS 2.000 cS 23.119
G 0 190 ISPVNPVAI ISPVNPVAI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.049 bgG -1 bgS 2.000 cS 15.449
G 0 191 SSIINFGALI SSIINFALI o 0 ip -99 il -99 dp 6 dl 1 Peplist sS 16.354 bgG -1 bgS 2.000 cS 14.754
G 0 192 KAIVNVIGM KAIVNVIGM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.245 bgG -1 bgS 2.000 cS 9.645
G 0 193 SGLLFTHL SGLL-FTHL o 0 ip 4 il 1 dp -99 dl -99 Peplist sS 15.089 bgG -1 bgS 2.000 cS 13.489
G 0 194 SAIKNTQNL SAIKNTQNL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 21.453 bgG -1 bgS 2.000 cS 19.853
G 0 195 FAIDDHDYL FAIDDHDYL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.981 bgG -1 bgS 2.000 cS 11.381
G 0 196 YVGVNIKGLHL YVGVNIKHL o 0 ip -99 il -99 dp 7 dl 2 Peplist sS 11.562 bgG -1 bgS 2.000 cS 9.962
G 0 197 SMVQNRVFL SMVQNRVFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.615 bgG -1 bgS 2.000 cS 14.015
G 0 198 GLPSLPNLPSL GSLPNLPSL o 0 ip -99 il -99 dp 1 dl 2 Peplist sS 16.062 bgG -1 bgS 2.000 cS 14.462
G 0 199 AAPTNANSL AAPTNANSL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 19.350 bgG -1 bgS 2.000 cS 17.750
G 0 200 TGPTNAIFKA TGPTNIFKA o 0 ip -99 il -99 dp 5 dl 1 Peplist sS 8.537 bgG -1 bgS 2.000 cS 6.937
G 0 201 AAPVNSIFQEYL AAPVNQEYL o 0 ip -99 il -99 dp 5 dl 3 Peplist sS 26.337 bgG -1 bgS 2.000 cS 24.737
G 0 202 ASVIALPHL ASVIALPHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.240 bgG -1 bgS 2.000 cS 8.640
G 0 203 STVHDQEHI STVHDQEHI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.603 bgG -1 bgS 2.000 cS 10.003
G 0 204 AAPVSATVL AAPVSATVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.192 bgG -1 bgS 2.000 cS 13.592
G 0 205 YQYLLVTAL YQYLLVTAL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.563 bgG -1 bgS 2.000 cS 7.963
G 0 206 GSVLNASTV GSVLNASTV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.698 bgG -1 bgS 2.000 cS 9.098
G 0 207 STFLRYTLV STFLRYTLV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 2.815 bgG -1 bgS 2.000 cS 1.215
G 0 208 ASIVNKDGL ASIVNKDGL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.349 bgG -1 bgS 2.000 cS 15.749
G 0 209 SSISNAKEV SSISNAKEV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.578 bgG -1 bgS 2.000 cS 12.978
G 0 210 ATYIFLQTF ATYIFLQTF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.419 bgG -1 bgS 2.000 cS 7.819
G 0 211 SQLKNADVEL SQLKNADVL o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 20.007 bgG -1 bgS 2.000 cS 18.407
G 0 212 SGIIDSDFL SGIIDSDFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.558 bgG -1 bgS 2.000 cS 9.958
G 0 213 YALENFVENL YALENFENL o 0 ip -99 il -99 dp 6 dl 1 Peplist sS 23.767 bgG -1 bgS 2.000 cS 22.167
G 0 214 SSGPTIQDYL SSPTIQDYL o 0 ip -99 il -99 dp 2 dl 1 Peplist sS 18.327 bgG -1 bgS 2.000 cS 16.727
G 0 215 NAVSNITNL NAVSNITNL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.726 bgG -1 bgS 2.000 cS 16.126
G 0 216 NQLKNTSTI NQLKNTSTI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.497 bgG -1 bgS 2.000 cS 12.897
G 0 217 VMLENYNHL VMLENYNHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.137 bgG -1 bgS 2.000 cS 14.537
G 0 218 MAPFPFPQL MAPFPFPQL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 8.628 bgG -1 bgS 2.000 cS 7.028
G 0 219 RGPSNAFFL RGPSNAFFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.044 bgG -1 bgS 2.000 cS 15.444
G 0 220 LALSNLESI LALSNLESI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.553 bgG -1 bgS 2.000 cS 13.953
G 0 221 KGLANHVVV KGLANHVVV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.269 bgG -1 bgS 2.000 cS 8.669
G 0 222 RAILNDTKL RAILNDTKL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.316 bgG -1 bgS 2.000 cS 12.716
G 0 223 RAPRNIHRHVI RAPRNIHVI o 0 ip -99 il -99 dp 6 dl 2 Peplist sS 19.810 bgG -1 bgS 2.000 cS 18.210
G 0 224 RSGVNSELV RSGVNSELV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.708 bgG -1 bgS 2.000 cS 9.108
G 0 225 AGLRLLTNM AGLRLLTNM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.824 bgG -1 bgS 2.000 cS 9.224
G 0 226 VTIRLLDVL VTIRLLDVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 8.576 bgG -1 bgS 2.000 cS 6.976
G 0 227 AASKNGQYV AASKNGQYV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.580 bgG -1 bgS 2.000 cS 10.980
G 0 228 SVLANYFVFM SVLANFVFM o 0 ip -99 il -99 dp 5 dl 1 Peplist sS 13.565 bgG -1 bgS 2.000 cS 11.965
G 0 229 FQGKNLETV FQGKNLETV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.966 bgG -1 bgS 2.000 cS 12.366
G 0 230 TQLMNGTSM TQLMNGTSM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.129 bgG -1 bgS 2.000 cS 13.529
G 0 231 KNHEFIATF KNHEFIATF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 5.662 bgG -1 bgS 2.000 cS 4.062
G 0 232 YSLQFTNL YSLQ-FTNL o 0 ip 4 il 1 dp -99 dl -99 Peplist sS 16.640 bgG -1 bgS 2.000 cS 15.040
G 0 233 AVMKNYLLPI AVMKNYLLI o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 7.851 bgG -1 bgS 2.000 cS 6.251
G 0 234 KQPLNTTRI KQPLNTTRI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.529 bgG -1 bgS 2.000 cS 16.929
G 0 235 SQSRMSTNM SQSRMSTNM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 7.833 bgG -1 bgS 2.000 cS 6.233
G 0 236 IGPDVYAKL IGPDVYAKL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 4.274 bgG -1 bgS 2.000 cS 2.674
G 0 237 ASLVNADKL ASLVNADKL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.693 bgG -1 bgS 2.000 cS 17.093
G 0 238 SAPVNKAEL SAPVNKAEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 21.325 bgG -1 bgS 2.000 cS 19.725
G 0 239 RSYDFEFM RSY-DFEFM o 0 ip 3 il 1 dp -99 dl -99 Peplist sS 13.255 bgG -1 bgS 2.000 cS 11.655
G 0 240 GAPLNIHKV GAPLNIHKV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.999 bgG -1 bgS 2.000 cS 12.399
G 0 241 ATVENLNEL ATVENLNEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.744 bgG -1 bgS 2.000 cS 14.144
G 0 242 FQLRLAEVL FQLRLAEVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.287 bgG -1 bgS 2.000 cS 10.687
G 0 243 YAADNQIYI YAADNQIYI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.385 bgG -1 bgS 2.000 cS 10.785
G 0 244 SQLPGVHEF SQLPGVHEF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 6.210 bgG -1 bgS 2.000 cS 4.610
G 0 245 FGIHNGVETL FGIHNVETL o 0 ip -99 il -99 dp 5 dl 1 Peplist sS 18.235 bgG -1 bgS 2.000 cS 16.635
G 0 246 KVAVNGQHM KVAVNGQHM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.582 bgG -1 bgS 2.000 cS 9.982
G 0 247 ASARNLEHL ASARNLEHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.827 bgG -1 bgS 2.000 cS 17.227
G 0 248 AGPQGLDLAPI AGPQGLDLI o 0 ip -99 il -99 dp 8 dl 2 Peplist sS 11.833 bgG -1 bgS 2.000 cS 10.233
G 0 249 KALVNAVKL KALVNAVKL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.237 bgG -1 bgS 2.000 cS 13.637
G 0 250 FSVTNPHTM FSVTNPHTM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 20.947 bgG -1 bgS 2.000 cS 19.347
G 0 251 YSEYLGRPTTL YSLGRPTTL o 0 ip -99 il -99 dp 2 dl 2 Peplist sS 11.672 bgG -1 bgS 2.000 cS 10.072
G 0 252 SLLELLTEV SLLELLTEV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 5.923 bgG -1 bgS 2.000 cS 4.323
G 0 253 YAPKGSSVV YAPKGSSVV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.711 bgG -1 bgS 2.000 cS 8.111
G 0 254 LSMRNTSVM LSMRNTSVM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.035 bgG -1 bgS 2.000 cS 12.435
G 0 255 SGKNFTEL SG-KNFTEL o 0 ip 2 il 1 dp -99 dl -99 Peplist sS 19.133 bgG -1 bgS 2.000 cS 17.533
G 0 256 SGILDRDTM SGILDRDTM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.635 bgG -1 bgS 2.000 cS 10.035
G 0 257 SAPSNPWGGL SAPSNPWGL o 0 ip -99 il -99 dp 7 dl 1 Peplist sS 21.920 bgG -1 bgS 2.000 cS 20.320
G 0 258 SAPRFLTAF SAPRFLTAF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.256 bgG -1 bgS 2.000 cS 12.656
G 0 259 FQAINAGHI FQAINAGHI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.248 bgG -1 bgS 2.000 cS 7.648
G 0 260 YLMKNADYF YLMKNADYF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.024 bgG -1 bgS 2.000 cS 9.424
G 0 261 SSPSNIHNI SSPSNIHNI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 23.024 bgG -1 bgS 2.000 cS 21.424
G 0 262 FQFANNKPEI FQFANKPEI o 0 ip -99 il -99 dp 4 dl 1 Peplist sS 14.436 bgG -1 bgS 2.000 cS 12.836
G 0 263 VGVENVAEL VGVENVAEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.398 bgG -1 bgS 2.000 cS 12.798
G 0 264 SAIFNNVMTL SAIFNNVTL o 0 ip -99 il -99 dp 7 dl 1 Peplist sS 16.231 bgG -1 bgS 2.000 cS 14.631
G 0 265 YSSENRNYM YSSENRNYM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.000 bgG -1 bgS 2.000 cS 14.400
G 0 266 SQLENKTII SQLENKTII o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 19.206 bgG -1 bgS 2.000 cS 17.606
G 0 267 YSIQGQHTI YSIQGQHTI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.621 bgG -1 bgS 2.000 cS 11.021
G 0 268 VGLSNLQFI VGLSNLQFI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.510 bgG -1 bgS 2.000 cS 14.910
G 0 269 HGPQNHEAHL HGPQNHEHL o 0 ip -99 il -99 dp 7 dl 1 Peplist sS 22.739 bgG -1 bgS 2.000 cS 21.139
G 0 270 AMIELVERL AMIELVERL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.047 bgG -1 bgS 2.000 cS 8.447
G 0 271 AALENGYTL AALENGYTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 19.111 bgG -1 bgS 2.000 cS 17.511
G 0 272 GSLRNLEEL GSLRNLEEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.962 bgG -1 bgS 2.000 cS 16.362
G 0 273 SSFDFRPSVM SSFDFPSVM o 0 ip -99 il -99 dp 5 dl 1 Peplist sS 11.851 bgG -1 bgS 2.000 cS 10.251
G 0 274 YLVVNPNYL YLVVNPNYL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.635 bgG -1 bgS 2.000 cS 13.035
G 0 275 YSLTLVDAL YSLTLVDAL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.826 bgG -1 bgS 2.000 cS 10.226
G 0 276 FGPDLKLAPRM FGPKLAPRM o 0 ip -99 il -99 dp 3 dl 2 Peplist sS 12.020 bgG -1 bgS 2.000 cS 10.420
G 0 277 YVVDNIDHL YVVDNIDHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 17.192 bgG -1 bgS 2.000 cS 15.592
G 0 278 YAVSNHSGTTM YAVSNHTTM o 0 ip -99 il -99 dp 6 dl 2 Peplist sS 21.625 bgG -1 bgS 2.000 cS 20.025
G 0 279 VSVTNLEEL VSVTNLEEL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 20.153 bgG -1 bgS 2.000 cS 18.553
G 0 280 KVMKNVSEI KVMKNVSEI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.426 bgG -1 bgS 2.000 cS 7.826
G 0 281 RQLENTEHM RQLENTEHM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 22.550 bgG -1 bgS 2.000 cS 20.950
G 0 282 KAVKNFTDV KAVKNFTDV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.621 bgG -1 bgS 2.000 cS 12.021
G 0 283 FGLRNLERLYL FGLRNLEYL o 0 ip -99 il -99 dp 7 dl 2 Peplist sS 21.330 bgG -1 bgS 2.000 cS 19.730
G 0 284 VGPELHHKLL VGPELHHKL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.053 bgG -1 bgS 2.000 cS 10.453
G 0 285 TSVSNFLVM TSVSNFLVM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.273 bgG -1 bgS 2.000 cS 14.673
G 0 286 VSPSNEQVL VSPSNEQVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 19.655 bgG -1 bgS 2.000 cS 18.055
G 0 287 AAVVGATHL AAVVGATHL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.876 bgG -1 bgS 2.000 cS 10.276
G 0 288 AAVENLKNI AAVENLKNI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 16.552 bgG -1 bgS 2.000 cS 14.952
G 0 289 QAIKNGQAL QAIKNGQAL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.052 bgG -1 bgS 2.000 cS 12.452
G 0 290 AQYNFILV AQY-NFILV o 0 ip 3 il 1 dp -99 dl -99 Peplist sS 11.725 bgG -1 bgS 2.000 cS 10.125
G 0 291 SNYERLESL SNYERLESL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.645 bgG -1 bgS 2.000 cS 10.045
G 0 292 FSPINWDDL FSPINWDDL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 20.579 bgG -1 bgS 2.000 cS 18.979
G 0 293 AALANATVI AALANATVI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.392 bgG -1 bgS 2.000 cS 13.792
G 0 294 SALDWWPKI SALDWWPKI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.493 bgG -1 bgS 2.000 cS 7.893
G 0 295 AAPVSGPRL AAPVSGPRL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 13.468 bgG -1 bgS 2.000 cS 11.868
G 0 296 NAPQNPESKL NAPQNPESL o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 22.001 bgG -1 bgS 2.000 cS 20.401
G 0 297 TAYAFHFL TAYAFH-FL o 0 ip 6 il 1 dp -99 dl -99 Peplist sS 9.406 bgG -1 bgS 2.000 cS 7.806
G 0 298 ATILNLERV ATILNLERV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.976 bgG -1 bgS 2.000 cS 11.376
G 0 299 YTIQNRVDI YTIQNRVDI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.744 bgG -1 bgS 2.000 cS 11.144
G 0 300 TSPVNPAVF TSPVNPAVF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 18.221 bgG -1 bgS 2.000 cS 16.621
G 0 301 GAIVNGKVL GAIVNGKVL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 12.858 bgG -1 bgS 2.000 cS 11.258
G 0 302 AAMLLQQVM AAMLLQQVM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 11.184 bgG -1 bgS 2.000 cS 9.584
G 0 303 KQAQNIVTL KQAQNIVTL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 15.672 bgG -1 bgS 2.000 cS 14.072
G 0 304 ISPLFAEL ISPLFAE-L o 0 ip 7 il 1 dp -99 dl -99 Peplist sS 13.032 bgG -1 bgS 2.000 cS 11.432
G 0 305 TGLRNGSFL TGLRNGSFL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 14.051 bgG -1 bgS 2.000 cS 12.451
G 0 306 QSIAFISRL QSIAFISRL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 7.310 bgG -1 bgS 2.000 cS 5.710
G 0 307 SSVKNVPENL SSVKNPENL o 0 ip -99 il -99 dp 5 dl 1 Peplist sS 22.960 bgG -1 bgS 2.000 cS 21.360
G 0 308 SSIVAQTAGI SSIVAQTAI o 0 ip -99 il -99 dp 8 dl 1 Peplist sS 10.007 bgG -1 bgS 2.000 cS 8.407
G 0 309 RAIKNDSVV RAIKNDSVV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 10.615 bgG -1 bgS 2.000 cS 9.015
G 0 310 KARELWDSI KARELWDSI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 4.535 bgG -1 bgS 2.000 cS 2.935
G 0 311 YIHINIGAL YIHINIGAL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 6.379 bgG -1 bgS 2.000 cS 4.779
G 0 312 YQLLLKEML YQLLLKEML o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 7.528 bgG -1 bgS 2.000 cS 5.928
G 0 313 AALEFLNRF AALEFLNRF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 9.003 bgG -1 bgS 2.000 cS 7.403
G 0 314 SRPGHIETF SRPGHIETF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 6.913 bgG -1 bgS 2.000 cS 5.313
G 0 315 VIVPHIVNL VIVPHIVNL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 5.553 bgG -1 bgS 2.000 cS 3.953
G 0 316 GNYKWINYL GNYKWINYL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 5.974 bgG -1 bgS 2.000 cS 4.374
G 0 317 AGYMYTQLM AGYMYTQLM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 4.321 bgG -1 bgS 2.000 cS 2.721
G 0 318 TSYDKRYVI TSYDKRYVI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 5.741 bgG -1 bgS 2.000 cS 4.141
G 0 319 SDFTVFERI SDFTVFERI o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 2.660 bgG -1 bgS 2.000 cS 1.060
G 0 320 VAFIFNQKF VAFIFNQKF o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 4.479 bgG -1 bgS 2.000 cS 2.879
G 0 321 IGYPFLVSV IGYPFLVSV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 4.040 bgG -1 bgS 2.000 cS 2.440
G 0 322 KVLRFIAEV KVLRFIAEV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 3.425 bgG -1 bgS 2.000 cS 1.825
G 0 323 VSFEKKVQV VSFEKKVQV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 4.237 bgG -1 bgS 2.000 cS 2.637
G 0 324 KLLALKDFM KLLALKDFM o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 1.743 bgG -1 bgS 2.000 cS 0.143
G 0 325 NNISSTVTV NNISSTVTV o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 3.122 bgG -1 bgS 2.000 cS 1.522
G 0 326 NSIVDQRDL NSIVDQRDL o 0 ip -99 il -99 dp -99 dl -99 Peplist sS 2.417 bgG -1 bgS 2.000 cS 0.817
## Trash cluster (5 outliers)
#Trash1 RSAATYLTV Peplist
#Trash2 IGIDKFGEI Peplist
#Trash3 MGFGAFAAL Peplist
#Trash4 VAYWHILSV Peplist
#Trash5 AAGVGDMVM Peplist
# group 0, size 327: Final KLD sum after 66400 epochs - 12.026946
# Trash cluster: removed 5 outliers
#
# Final number of non-empty clusters: 1
### Final KLD sum after 66400 iterations: 12.026946`
The text was updated successfully, but these errors were encountered:
When running the test data for MHC-I I obtain different clustering results than in the mouse_liver_report.html file.
My results are as follow:
Compared to:
Perhaps this is due to a version difference in gibbscluster using different default arguments ?
Here is the tmp file with the gibbscluster info:
The text was updated successfully, but these errors were encountered: